Wall clock time and date at job start Wed Apr 1 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.47071 * 126.30041 * 2 1 4 4 C 1.54065 * 110.10425 * 208.99200 * 3 2 1 5 5 C 1.55604 * 104.29785 * 314.79917 * 4 3 2 6 6 H 1.09001 * 111.16786 * 280.01176 * 5 4 3 7 7 C 1.50704 * 111.16902 * 155.78505 * 5 4 3 8 8 O 1.21278 * 119.99794 * 330.00580 * 7 5 4 9 9 N 1.34775 * 120.00179 * 149.99446 * 7 5 4 10 10 C 1.46499 * 120.00025 * 179.97438 * 9 7 5 11 11 H 1.08998 * 110.63962 * 36.69574 * 10 9 7 12 12 C 1.54321 * 110.72384 * 273.55367 * 10 9 7 13 13 N 1.47026 * 107.26791 * 263.65067 * 12 10 9 14 14 C 1.36941 * 125.64206 * 181.07813 * 13 12 10 15 15 H 1.08004 * 119.99539 * 179.97438 * 14 13 12 16 16 C 1.38807 * 120.00624 * 359.97438 * 14 13 12 17 17 N 1.31626 * 119.99751 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00379 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47115 * 90.00052 * 18 16 14 20 20 H 1.48499 * 109.47243 * 210.00053 * 18 16 14 21 21 H 1.48499 * 109.46983 * 330.00039 * 18 16 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 13 12 10 23 23 C 1.54905 * 104.92834 * 335.81449 * 22 13 12 24 24 C 1.53000 * 111.00859 * 155.14142 * 23 22 13 25 25 C 1.53007 * 111.00473 * 278.99353 * 23 22 13 26 26 S 1.67003 * 126.30075 * 179.97438 * 2 1 3 27 27 O 1.42092 * 105.13395 * 61.10823 * 26 2 1 28 28 O 1.42102 * 105.13252 * 291.43424 * 26 2 1 29 29 H 1.09001 * 109.47488 * 0.02925 * 1 2 3 30 30 H 1.08998 * 109.47137 * 120.02416 * 1 2 3 31 31 H 1.09001 * 109.47599 * 240.02475 * 1 2 3 32 32 H 1.08997 * 109.35364 * 88.81683 * 3 2 1 33 33 H 1.08992 * 109.30318 * 329.13718 * 3 2 1 34 34 H 1.09004 * 110.46926 * 196.09354 * 4 3 2 35 35 H 1.08999 * 110.58092 * 73.55607 * 4 3 2 36 36 H 0.97004 * 119.99985 * 0.02562 * 9 7 5 37 37 H 1.08998 * 109.88101 * 144.23586 * 12 10 9 38 38 H 1.08997 * 110.01327 * 23.13953 * 12 10 9 39 39 H 0.96995 * 120.00037 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.36926 * 94.70918 * 22 13 12 41 41 H 1.08995 * 110.36556 * 216.92202 * 22 13 12 42 42 H 1.09000 * 109.47194 * 61.45060 * 24 23 22 43 43 H 1.09001 * 109.47578 * 181.45505 * 24 23 22 44 44 H 1.09003 * 109.46933 * 301.45233 * 24 23 22 45 45 H 1.08997 * 109.46961 * 58.54253 * 25 23 22 46 46 H 1.09003 * 109.46792 * 178.54551 * 25 23 22 47 47 H 1.08997 * 109.46833 * 298.54519 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3356 1.1853 0.0000 4 6 3.6690 0.8629 -0.7012 5 6 4.0863 -0.5177 -0.1173 6 1 4.5444 -0.4072 0.8656 7 6 5.0024 -1.2534 -1.0611 8 8 4.9076 -1.0788 -2.2575 9 7 5.9273 -2.1051 -0.5756 10 6 6.8175 -2.8206 -1.4930 11 1 7.0922 -2.1855 -2.3352 12 6 6.1588 -4.1263 -1.9858 13 7 6.6563 -5.2152 -1.1324 14 6 6.3279 -6.5389 -1.2552 15 1 6.7491 -7.2651 -0.5757 16 6 5.4538 -6.9476 -2.2531 17 7 4.9402 -6.0626 -3.0810 18 14 5.0065 -8.7534 -2.4211 19 1 3.8072 -9.0451 -1.5954 20 1 4.7143 -9.0607 -3.8442 21 1 6.1423 -9.5899 -1.9571 22 6 7.5675 -4.6460 -0.1229 23 6 8.0855 -3.3281 -0.7507 24 6 8.5230 -2.3396 0.3320 25 6 9.2252 -3.6002 -1.7347 26 16 2.4536 -1.3459 0.0006 27 8 2.1391 -2.0378 -1.2000 28 8 2.2693 -1.9411 1.2777 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 2.5323 1.4890 1.0282 33 1 1.8373 1.9984 -0.5277 34 1 4.4172 1.6191 -0.4637 35 1 3.5277 0.7935 -1.7798 36 1 6.0030 -2.2448 0.3814 37 1 6.4358 -4.3124 -3.0235 38 1 5.0748 -4.0530 -1.8991 39 1 4.3296 -6.3481 -3.7785 40 1 7.0281 -4.4395 0.8016 41 1 8.3967 -5.3275 0.0668 42 1 9.3404 -2.7715 0.9095 43 1 8.8580 -1.4135 -0.1353 44 1 7.6824 -2.1294 0.9933 45 1 8.8756 -4.2717 -2.5188 46 1 9.5527 -2.6607 -2.1801 47 1 10.0591 -4.0619 -1.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977321819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:19 Heat of formation + Delta-G solvation = -58.183890 kcal Electronic energy + Delta-G solvation = -30530.496459 eV Core-core repulsion = 26456.048972 eV Total energy + Delta-G solvation = -4074.447487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.03640 -38.29201 -37.17082 -37.03475 -35.89274 -33.94358 -33.31121 -32.98950 -30.67595 -28.79548 -27.60985 -26.70077 -25.68265 -25.58231 -23.56758 -22.46395 -20.81235 -20.01118 -19.22038 -18.65869 -17.69195 -17.31945 -16.84573 -16.61107 -15.95732 -15.49607 -15.24393 -14.73203 -14.54488 -14.34265 -14.04999 -13.93365 -13.78001 -13.48921 -13.31508 -13.27305 -13.06661 -12.55726 -12.24213 -12.08218 -12.04113 -12.02358 -11.95191 -11.70305 -11.68738 -11.41496 -11.27135 -11.09845 -10.97637 -10.72690 -10.69910 -10.40257 -10.26693 -10.02003 -9.86951 -9.77186 -9.60728 -9.24894 -8.64716 -8.53226 -6.78296 -5.62431 -2.98274 -0.04599 2.33724 2.74644 3.09670 3.46461 3.50434 3.52664 3.53468 3.61771 4.19715 4.26129 4.55515 4.60594 4.65976 4.87159 4.88752 4.96196 5.22886 5.24630 5.26294 5.28354 5.38627 5.52824 5.58394 5.60670 5.61752 5.67197 5.76805 5.87137 5.99230 6.12892 6.15146 6.19173 6.28979 6.36071 6.53296 6.58581 6.62749 6.66367 6.90801 7.51987 7.64985 7.71274 7.90667 8.29568 8.34549 9.27504 9.88315 10.52750 11.48288 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004323 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.538966 B = 6475.039221 C = 8098.532586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -1.000 6.000 3 C 0.082 3.918 4 C -0.109 4.109 5 C -0.601 4.601 6 H 0.161 0.839 7 C 0.535 3.465 8 O -0.507 6.507 9 N -0.704 5.704 10 C 0.122 3.878 11 H 0.092 0.908 12 C 0.171 3.829 13 N -0.603 5.603 14 C -0.235 4.235 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.142 3.858 23 C -0.089 4.089 24 C -0.132 4.132 25 C -0.125 4.125 26 S 2.588 3.412 27 O -0.919 6.919 28 O -0.946 6.946 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.015 0.985 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 19.136 8.904 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.844 5.844 3 C -0.044 4.044 4 C -0.148 4.148 5 C -0.711 4.711 6 H 0.179 0.821 7 C 0.317 3.683 8 O -0.382 6.382 9 N -0.356 5.356 10 C 0.018 3.982 11 H 0.109 0.891 12 C 0.045 3.955 13 N -0.329 5.329 14 C -0.363 4.363 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.562 5.562 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.015 3.985 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.182 4.182 26 S 2.680 3.320 27 O -0.907 6.907 28 O -0.935 6.935 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.233 0.767 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.318 18.136 7.920 19.833 hybrid contribution 0.069 -0.353 0.494 0.612 sum -1.249 17.782 8.415 19.712 Atomic orbital electron populations 1.21282 0.75804 1.03329 1.01754 1.57224 1.13868 1.21371 1.91895 1.22107 0.89868 0.90787 1.01659 1.22675 0.96282 0.92793 1.03093 1.30984 1.20534 1.10907 1.08710 0.82098 1.18768 0.81410 0.80055 0.88077 1.90760 1.68721 1.64006 1.14675 1.46060 1.35262 1.43398 1.10881 1.22655 0.88998 0.95212 0.91371 0.89051 1.21585 0.97413 0.81958 0.94513 1.44428 1.51575 1.03610 1.33309 1.19000 1.22794 0.81965 1.12512 0.90413 1.24831 0.99545 0.97785 0.98073 1.69944 1.34518 1.31626 1.20136 0.86149 0.78275 0.84481 0.77000 1.21601 1.21671 1.20741 1.21644 0.93051 0.91799 0.91958 1.22076 0.94338 0.96585 0.96090 1.21694 1.00694 0.98580 0.98031 1.21586 0.96404 1.01106 0.99131 1.06278 0.76751 0.73497 0.75498 1.93704 1.80237 1.69812 1.46991 1.93617 1.83502 1.73973 1.42396 0.90212 0.91808 0.92054 0.90672 0.88639 0.86853 0.87089 0.76715 0.92444 0.93012 0.93503 0.96714 0.93914 0.92412 0.92753 0.93124 0.91146 0.93370 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.10 11.40 59.84 0.68 1.78 16 2 N -1.00 -11.09 3.72 -120.71 -0.45 -11.54 16 3 C 0.08 0.60 6.81 -3.17 -0.02 0.58 16 4 C -0.11 -0.96 6.16 -24.79 -0.15 -1.11 16 5 C -0.60 -7.21 3.71 -26.50 -0.10 -7.31 16 6 H 0.16 1.26 8.14 -51.93 -0.42 0.84 16 7 C 0.54 8.98 6.78 -10.98 -0.07 8.91 16 8 O -0.51 -10.35 15.69 5.56 0.09 -10.27 16 9 N -0.70 -11.67 4.56 -51.88 -0.24 -11.91 16 10 C 0.12 2.32 2.51 -65.94 -0.17 2.15 16 11 H 0.09 1.75 7.60 -51.93 -0.39 1.35 16 12 C 0.17 4.30 4.73 -3.06 -0.01 4.29 16 13 N -0.60 -15.35 3.38 -170.08 -0.58 -15.93 16 14 C -0.23 -6.63 10.28 -15.06 -0.15 -6.79 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 17 N -0.92 -28.31 10.31 55.49 0.57 -27.73 16 18 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.14 2.82 6.14 -2.53 -0.02 2.80 16 23 C -0.09 -1.46 0.84 -152.20 -0.13 -1.58 16 24 C -0.13 -1.62 8.36 37.16 0.31 -1.30 16 25 C -0.12 -1.94 8.61 37.16 0.32 -1.62 16 26 S 2.59 40.16 5.83 -107.50 -0.63 39.53 16 27 O -0.92 -19.14 17.75 -57.41 -1.02 -20.16 16 28 O -0.95 -16.66 18.14 -57.41 -1.04 -17.70 16 29 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 1.19 7.29 -51.93 -0.38 0.81 16 36 H 0.40 5.54 6.85 -40.82 -0.28 5.26 16 37 H 0.06 1.62 7.38 -51.93 -0.38 1.23 16 38 H 0.05 1.52 7.40 -51.93 -0.38 1.14 16 39 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.02 0.29 8.04 -51.93 -0.42 -0.12 16 41 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.56 6.19 -51.93 -0.32 0.24 16 45 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -39.38 384.36 -9.71 -49.08 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.58 Total: 2.39 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.39 Total: 0.55 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.69 Total: -67.11 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.97 Total: -48.13 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 40.16 SS G_CDS: -0.63 Total: 39.53 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.38 -9.71 -49.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.102 kcal (2) G-P(sol) polarization free energy of solvation -39.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds