Wall clock time and date at job start Wed Apr 1 2020 03:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.47071 * 126.30041 * 2 1 4 4 C 1.54065 * 110.10425 * 208.99200 * 3 2 1 5 5 C 1.55604 * 104.29785 * 314.79917 * 4 3 2 6 6 H 1.09001 * 111.16786 * 280.01176 * 5 4 3 7 7 C 1.50704 * 111.16902 * 155.78505 * 5 4 3 8 8 O 1.21278 * 119.99794 * 330.00580 * 7 5 4 9 9 N 1.34775 * 120.00179 * 149.99446 * 7 5 4 10 10 C 1.46499 * 120.00025 * 179.97438 * 9 7 5 11 11 H 1.08998 * 110.63962 * 36.69574 * 10 9 7 12 12 C 1.54321 * 110.72384 * 273.55367 * 10 9 7 13 13 N 1.47026 * 107.26791 * 263.65067 * 12 10 9 14 14 C 1.36941 * 125.64206 * 181.07813 * 13 12 10 15 15 H 1.08004 * 119.99539 * 179.97438 * 14 13 12 16 16 C 1.38807 * 120.00624 * 359.97438 * 14 13 12 17 17 N 1.31626 * 119.99751 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00379 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47115 * 90.00052 * 18 16 14 20 20 H 1.48499 * 109.47243 * 210.00053 * 18 16 14 21 21 H 1.48499 * 109.46983 * 330.00039 * 18 16 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 13 12 10 23 23 C 1.54905 * 104.92834 * 335.81449 * 22 13 12 24 24 C 1.53000 * 111.00859 * 155.14142 * 23 22 13 25 25 C 1.53007 * 111.00473 * 278.99353 * 23 22 13 26 26 S 1.67003 * 126.30075 * 179.97438 * 2 1 3 27 27 O 1.42092 * 105.13395 * 61.10823 * 26 2 1 28 28 O 1.42102 * 105.13252 * 291.43424 * 26 2 1 29 29 H 1.09001 * 109.47488 * 0.02925 * 1 2 3 30 30 H 1.08998 * 109.47137 * 120.02416 * 1 2 3 31 31 H 1.09001 * 109.47599 * 240.02475 * 1 2 3 32 32 H 1.08997 * 109.35364 * 88.81683 * 3 2 1 33 33 H 1.08992 * 109.30318 * 329.13718 * 3 2 1 34 34 H 1.09004 * 110.46926 * 196.09354 * 4 3 2 35 35 H 1.08999 * 110.58092 * 73.55607 * 4 3 2 36 36 H 0.97004 * 119.99985 * 0.02562 * 9 7 5 37 37 H 1.08998 * 109.88101 * 144.23586 * 12 10 9 38 38 H 1.08997 * 110.01327 * 23.13953 * 12 10 9 39 39 H 0.96995 * 120.00037 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.36926 * 94.70918 * 22 13 12 41 41 H 1.08995 * 110.36556 * 216.92202 * 22 13 12 42 42 H 1.09000 * 109.47194 * 61.45060 * 24 23 22 43 43 H 1.09001 * 109.47578 * 181.45505 * 24 23 22 44 44 H 1.09003 * 109.46933 * 301.45233 * 24 23 22 45 45 H 1.08997 * 109.46961 * 58.54253 * 25 23 22 46 46 H 1.09003 * 109.46792 * 178.54551 * 25 23 22 47 47 H 1.08997 * 109.46833 * 298.54519 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3356 1.1853 0.0000 4 6 3.6690 0.8629 -0.7012 5 6 4.0863 -0.5177 -0.1173 6 1 4.5444 -0.4072 0.8656 7 6 5.0024 -1.2534 -1.0611 8 8 4.9076 -1.0788 -2.2575 9 7 5.9273 -2.1051 -0.5756 10 6 6.8175 -2.8206 -1.4930 11 1 7.0922 -2.1855 -2.3352 12 6 6.1588 -4.1263 -1.9858 13 7 6.6563 -5.2152 -1.1324 14 6 6.3279 -6.5389 -1.2552 15 1 6.7491 -7.2651 -0.5757 16 6 5.4538 -6.9476 -2.2531 17 7 4.9402 -6.0626 -3.0810 18 14 5.0065 -8.7534 -2.4211 19 1 3.8072 -9.0451 -1.5954 20 1 4.7143 -9.0607 -3.8442 21 1 6.1423 -9.5899 -1.9571 22 6 7.5675 -4.6460 -0.1229 23 6 8.0855 -3.3281 -0.7507 24 6 8.5230 -2.3396 0.3320 25 6 9.2252 -3.6002 -1.7347 26 16 2.4536 -1.3459 0.0006 27 8 2.1391 -2.0378 -1.2000 28 8 2.2693 -1.9411 1.2777 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 2.5323 1.4890 1.0282 33 1 1.8373 1.9984 -0.5277 34 1 4.4172 1.6191 -0.4637 35 1 3.5277 0.7935 -1.7798 36 1 6.0030 -2.2448 0.3814 37 1 6.4358 -4.3124 -3.0235 38 1 5.0748 -4.0530 -1.8991 39 1 4.3296 -6.3481 -3.7785 40 1 7.0281 -4.4395 0.8016 41 1 8.3967 -5.3275 0.0668 42 1 9.3404 -2.7715 0.9095 43 1 8.8580 -1.4135 -0.1353 44 1 7.6824 -2.1294 0.9933 45 1 8.8756 -4.2717 -2.5188 46 1 9.5527 -2.6607 -2.1801 47 1 10.0591 -4.0619 -1.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977321819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:18 Heat of formation + Delta-G solvation = -91.684636 kcal Electronic energy + Delta-G solvation = -30531.949160 eV Core-core repulsion = 26456.048972 eV Total energy + Delta-G solvation = -4075.900189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.47125 -39.73488 -38.35316 -38.06888 -37.19561 -35.77719 -34.70641 -34.05260 -32.63758 -30.22584 -28.78664 -27.93349 -27.39802 -26.52206 -25.18788 -23.46711 -22.32764 -21.67698 -20.52216 -19.95501 -18.83991 -18.72232 -18.41110 -17.90997 -17.37293 -16.86088 -16.55356 -16.20002 -15.75742 -15.67909 -15.54651 -15.38278 -15.15845 -14.78401 -14.34120 -14.26576 -13.98173 -13.88220 -13.78814 -13.46849 -13.42339 -13.30660 -13.17595 -13.02353 -12.95146 -12.86328 -12.71243 -12.57718 -12.43145 -12.22628 -12.15369 -11.88986 -11.77916 -11.69897 -11.54761 -11.33738 -11.18475 -10.77290 -10.16983 -10.03735 -8.92438 -7.86011 -5.23334 -1.20034 1.35405 1.39925 1.42561 1.43717 1.52115 1.84149 2.40129 2.46796 2.79475 3.11943 3.32600 3.41344 3.44647 3.57826 3.70687 3.86801 3.93213 4.05337 4.09794 4.29729 4.37055 4.48740 4.60839 4.65018 4.70343 4.79202 4.83605 4.87590 4.88463 4.94810 4.96456 5.01151 5.04970 5.11690 5.16621 5.25007 5.35726 5.43746 5.56256 5.58253 5.63650 5.71057 6.15408 6.32343 6.99751 7.06206 7.75602 8.39060 9.23273 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004323 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.538966 B = 6475.039221 C = 8098.532586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.993 5.993 3 C 0.076 3.924 4 C -0.107 4.107 5 C -0.572 4.572 6 H 0.215 0.785 7 C 0.527 3.473 8 O -0.550 6.550 9 N -0.698 5.698 10 C 0.134 3.866 11 H 0.089 0.911 12 C 0.186 3.814 13 N -0.622 5.622 14 C -0.239 4.239 15 H 0.090 0.910 16 C -0.073 4.073 17 N -0.955 5.955 18 Si 0.977 3.023 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.259 1.259 22 C 0.133 3.867 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.123 4.123 26 S 2.564 3.436 27 O -0.997 6.997 28 O -0.980 6.980 29 H 0.123 0.877 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.009 0.991 38 H -0.006 1.006 39 H 0.243 0.757 40 H 0.030 0.970 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 22.307 12.247 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.840 5.840 3 C -0.048 4.048 4 C -0.146 4.146 5 C -0.686 4.686 6 H 0.232 0.768 7 C 0.310 3.690 8 O -0.428 6.428 9 N -0.351 5.351 10 C 0.029 3.971 11 H 0.107 0.893 12 C 0.060 3.940 13 N -0.348 5.348 14 C -0.368 4.368 15 H 0.108 0.892 16 C -0.266 4.266 17 N -0.604 5.604 18 Si 0.805 3.195 19 H -0.218 1.218 20 H -0.224 1.224 21 H -0.183 1.183 22 C 0.008 3.992 23 C -0.074 4.074 24 C -0.183 4.183 25 C -0.180 4.180 26 S 2.662 3.338 27 O -0.986 6.986 28 O -0.969 6.969 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.251 0.749 37 H 0.027 0.973 38 H 0.012 0.988 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.678 21.289 11.344 24.133 hybrid contribution -0.529 -1.277 -0.534 1.481 sum 0.149 20.013 10.810 22.746 Atomic orbital electron populations 1.21556 0.74641 1.05917 1.01172 1.56995 1.14499 1.20921 1.91571 1.22522 0.88427 0.89591 1.04286 1.22927 0.98463 0.91517 1.01713 1.30838 1.16114 1.11212 1.10438 0.76803 1.19521 0.81328 0.79797 0.88307 1.90747 1.69744 1.65295 1.16996 1.45937 1.35071 1.42776 1.11308 1.22257 0.90144 0.92107 0.92616 0.89345 1.21149 0.94506 0.85579 0.92809 1.44703 1.52529 1.03030 1.34572 1.19506 1.21672 0.83765 1.11813 0.89218 1.25745 1.00341 1.02101 0.98380 1.70245 1.35580 1.33611 1.20969 0.85098 0.78331 0.79748 0.76329 1.21759 1.22398 1.18310 1.21972 0.92379 0.93654 0.91199 1.22062 0.92859 0.95495 0.96959 1.21691 1.01998 0.97931 0.96703 1.21590 0.96651 1.01661 0.98134 1.06444 0.78746 0.74766 0.73891 1.93625 1.82365 1.73161 1.49465 1.93566 1.84701 1.75924 1.42746 0.85862 0.93390 0.91974 0.86726 0.85467 0.82122 0.89668 0.74882 0.97284 0.98763 0.94806 0.95210 0.92968 0.90201 0.90756 0.91686 0.95412 0.90867 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 11.40 127.77 1.46 3.32 16 2 N -0.99 -20.53 3.72 -535.83 -1.99 -22.52 16 3 C 0.08 0.78 6.81 86.63 0.59 1.37 16 4 C -0.11 -1.50 6.16 31.85 0.20 -1.30 16 5 C -0.57 -12.45 3.71 30.75 0.11 -12.34 16 6 H 0.21 2.27 8.14 -2.39 -0.02 2.25 16 7 C 0.53 17.60 6.78 87.66 0.59 18.19 16 8 O -0.55 -23.45 15.69 -3.02 -0.05 -23.50 16 9 N -0.70 -22.63 4.56 -436.44 -1.99 -24.62 16 10 C 0.13 5.19 2.51 46.28 0.12 5.31 16 11 H 0.09 3.48 7.60 -2.39 -0.02 3.46 16 12 C 0.19 10.07 4.73 86.73 0.41 10.48 16 13 N -0.62 -32.87 3.38 -692.01 -2.34 -35.21 16 14 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 15 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 16 C -0.07 -4.48 5.49 84.86 0.47 -4.01 16 17 N -0.95 -63.74 10.31 21.65 0.22 -63.51 16 18 Si 0.98 49.10 29.55 68.60 2.03 51.13 16 19 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.13 5.12 6.14 86.85 0.53 5.66 16 23 C -0.07 -2.22 0.84 -50.69 -0.04 -2.26 16 24 C -0.13 -2.45 8.36 71.98 0.60 -1.85 16 25 C -0.12 -3.62 8.61 71.98 0.62 -3.00 16 26 S 2.56 81.44 5.83 -56.49 -0.33 81.11 16 27 O -1.00 -45.52 17.75 -127.77 -2.27 -47.79 16 28 O -0.98 -35.25 18.14 -127.77 -2.32 -37.57 16 29 H 0.12 0.99 8.11 -2.39 -0.02 0.98 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.72 7.29 -2.39 -0.02 1.70 16 36 H 0.41 10.53 6.85 -92.71 -0.64 9.90 16 37 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 38 H -0.01 -0.38 7.40 -2.39 -0.02 -0.40 16 39 H 0.24 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.03 1.09 8.04 -2.39 -0.02 1.07 16 41 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.10 6.19 -2.39 -0.01 1.08 16 45 H 0.03 1.04 7.82 -2.39 -0.02 1.02 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -99.69 384.36 -2.18 -101.87 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.34 Total: 14.12 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.52 Total: 6.49 kcal Atomic # 7 Polarization: -139.76 SS G_CDS: -6.10 Total: -145.86 kcal Atomic # 8 Polarization: -104.23 SS G_CDS: -4.63 Total: -108.86 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.03 Total: 51.13 kcal Atomic # 16 Polarization: 81.44 SS G_CDS: -0.33 Total: 81.11 kcal Total: -99.69 -2.18 -101.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.185 kcal (2) G-P(sol) polarization free energy of solvation -99.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds