Wall clock time and date at job start Wed Apr 1 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47067 * 126.30257 * 2 1 4 4 C 1.54315 * 109.97022 * 150.90100 * 3 2 1 5 5 C 1.55607 * 104.19243 * 45.50844 * 4 3 2 6 6 H 1.08996 * 111.20335 * 79.80643 * 5 4 3 7 7 C 1.50700 * 111.16772 * 204.05918 * 5 4 3 8 8 O 1.21278 * 119.99878 * 27.79452 * 7 5 4 9 9 N 1.34767 * 119.99989 * 207.78816 * 7 5 4 10 10 C 1.46507 * 120.00137 * 179.97438 * 9 7 5 11 11 H 1.08996 * 110.87977 * 37.43385 * 10 9 7 12 12 C 1.54910 * 111.00533 * 273.55006 * 10 9 7 13 13 N 1.47422 * 104.83090 * 278.93381 * 12 10 9 14 14 C 1.36932 * 125.64807 * 155.90685 * 13 12 10 15 15 H 1.08005 * 120.00434 * 179.97438 * 14 13 12 16 16 C 1.38816 * 119.99929 * 359.97429 * 14 13 12 17 17 N 1.31612 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47589 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47077 * 120.00472 * 18 16 14 21 21 H 1.48499 * 109.47166 * 239.99798 * 18 16 14 22 22 C 1.47025 * 108.70299 * 335.87349 * 13 12 10 23 23 C 1.54316 * 107.27488 * 1.05670 * 22 13 12 24 24 C 1.52999 * 110.72285 * 263.83324 * 23 22 13 25 25 C 1.52994 * 110.72153 * 140.55373 * 23 22 13 26 26 S 1.67006 * 126.30436 * 180.30650 * 2 1 3 27 27 O 1.42099 * 105.13087 * 298.89840 * 26 2 1 28 28 O 1.42101 * 105.13106 * 68.56490 * 26 2 1 29 29 H 1.09002 * 109.47391 * 269.68964 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.69020 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.69148 * 1 2 3 32 32 H 1.08994 * 109.35757 * 271.18420 * 3 2 1 33 33 H 1.08997 * 109.35340 * 30.82411 * 3 2 1 34 34 H 1.09001 * 110.65464 * 286.77557 * 4 3 2 35 35 H 1.09005 * 110.38700 * 164.10963 * 4 3 2 36 36 H 0.97007 * 120.00235 * 0.02562 * 9 7 5 37 37 H 1.09003 * 110.36586 * 37.76757 * 12 10 9 38 38 H 1.08994 * 110.36617 * 160.09317 * 12 10 9 39 39 H 0.97001 * 120.00212 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88374 * 120.48317 * 22 13 12 41 41 H 1.09004 * 109.87912 * 241.48283 * 22 13 12 42 42 H 1.08998 * 109.47113 * 173.51544 * 24 23 22 43 43 H 1.08995 * 109.47153 * 293.52216 * 24 23 22 44 44 H 1.09004 * 109.46757 * 53.52046 * 24 23 22 45 45 H 1.08993 * 109.47714 * 306.48703 * 25 23 22 46 46 H 1.09007 * 109.46768 * 66.48298 * 25 23 22 47 47 H 1.08999 * 109.47512 * 186.47890 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1852 0.0000 4 6 3.6690 0.8596 0.7053 5 6 4.0864 -0.5183 0.1150 6 1 4.5442 -0.4038 -0.8675 7 6 5.0025 -1.2582 1.0554 8 8 4.9346 -1.0593 2.2498 9 7 5.8972 -2.1410 0.5691 10 6 6.7882 -2.8599 1.4832 11 1 6.2698 -3.1209 2.4058 12 6 8.0651 -2.0339 1.7783 13 7 8.9447 -2.2719 0.6194 14 6 9.9439 -1.4391 0.1916 15 1 10.5356 -1.7047 -0.6721 16 6 10.1966 -0.2536 0.8680 17 7 9.4754 0.0703 1.9202 18 14 11.5603 0.8821 0.2848 19 1 12.2171 0.2941 -0.9102 20 1 10.9857 2.2053 -0.0676 21 1 12.5618 1.0501 1.3683 22 6 8.5718 -3.5519 -0.0005 23 6 7.3833 -4.1210 0.8027 24 6 7.8691 -5.1236 1.8513 25 6 6.3581 -4.7665 -0.1316 26 16 2.4538 -1.3459 -0.0072 27 8 2.1392 -2.0437 1.1900 28 8 2.2694 -1.9347 -1.2872 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5091 32 1 2.5325 1.4889 -1.0281 33 1 1.8378 1.9992 0.5269 34 1 3.5255 0.7847 1.7833 35 1 4.4173 1.6170 0.4712 36 1 5.9518 -2.2998 -0.3863 37 1 7.8214 -0.9744 1.8582 38 1 8.5407 -2.3848 2.6940 39 1 9.6522 0.8986 2.3931 40 1 8.2752 -3.3895 -1.0367 41 1 9.4141 -4.2426 0.0398 42 1 7.0320 -5.4251 2.4809 43 1 8.2825 -5.9999 1.3521 44 1 8.6390 -4.6598 2.4681 45 1 6.0699 -4.0530 -0.9035 46 1 6.7966 -5.6489 -0.5980 47 1 5.4776 -5.0579 0.4409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977321831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:36 Heat of formation + Delta-G solvation = -60.963770 kcal Electronic energy + Delta-G solvation = -30489.062640 eV Core-core repulsion = 26414.494608 eV Total energy + Delta-G solvation = -4074.568032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -39.96320 -38.29300 -37.21142 -37.12013 -36.06620 -33.92245 -33.31786 -33.01384 -30.74177 -28.78969 -27.68996 -26.69126 -25.70173 -25.58194 -23.54687 -22.45034 -20.86223 -19.96450 -19.25034 -18.68510 -17.66668 -17.32857 -16.87260 -16.69165 -16.02805 -15.63855 -15.20565 -14.75620 -14.70664 -14.21855 -14.05337 -13.86025 -13.77453 -13.49534 -13.33209 -13.20471 -13.05704 -12.76746 -12.29817 -12.24836 -12.14285 -12.12411 -11.93568 -11.79302 -11.64142 -11.36246 -11.33038 -11.20486 -11.06133 -10.82748 -10.71314 -10.44173 -10.24247 -10.00045 -9.85902 -9.74095 -9.67435 -9.29566 -8.73615 -8.50284 -6.85369 -5.67092 -3.10134 -0.12267 2.24350 2.79054 3.16237 3.35944 3.41967 3.43897 3.44446 3.67083 4.21455 4.28068 4.44997 4.61530 4.69547 4.91602 4.95450 5.01476 5.21086 5.25111 5.26066 5.31223 5.43510 5.45865 5.48517 5.58975 5.64526 5.75271 5.80599 5.87211 5.99941 6.08295 6.15820 6.23290 6.23480 6.36144 6.47250 6.57260 6.62882 6.68151 6.90966 7.42407 7.58750 7.73410 7.87726 8.34414 8.42456 9.18208 9.79616 10.43780 11.35627 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003961 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.802592 B = 7067.853335 C = 8449.965170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.999 5.999 3 C 0.080 3.920 4 C -0.109 4.109 5 C -0.593 4.593 6 H 0.164 0.836 7 C 0.538 3.462 8 O -0.510 6.510 9 N -0.696 5.696 10 C 0.121 3.879 11 H 0.091 0.909 12 C 0.147 3.853 13 N -0.602 5.602 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.291 1.291 22 C 0.142 3.858 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.137 4.137 26 S 2.588 3.412 27 O -0.935 6.935 28 O -0.951 6.951 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.398 0.602 37 H 0.115 0.885 38 H 0.023 0.977 39 H 0.252 0.748 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 -1.030 -5.240 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.705 4.705 6 H 0.182 0.818 7 C 0.319 3.681 8 O -0.384 6.384 9 N -0.347 5.347 10 C 0.016 3.984 11 H 0.109 0.891 12 C 0.021 3.979 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.218 1.218 22 C 0.016 3.984 23 C -0.089 4.089 24 C -0.186 4.186 25 C -0.195 4.195 26 S 2.681 3.319 27 O -0.924 6.924 28 O -0.940 6.940 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.233 0.767 37 H 0.132 0.868 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.248 -1.669 -4.378 16.911 hybrid contribution 1.319 1.261 -0.881 2.026 sum -14.930 -0.408 -5.259 15.834 Atomic orbital electron populations 1.21217 0.75872 1.02890 1.01751 1.57130 1.13769 1.21477 1.91854 1.22193 0.89793 0.90626 1.01923 1.22737 0.96083 0.93168 1.02832 1.30930 1.19398 1.10860 1.09270 0.81832 1.18700 0.81328 0.80060 0.87976 1.90739 1.69367 1.63406 1.14935 1.45818 1.35929 1.41948 1.11011 1.22666 0.92251 0.91796 0.91709 0.89141 1.22317 0.85136 1.01744 0.88711 1.44480 1.38327 1.18586 1.31370 1.19086 1.07752 0.98650 1.09720 0.90487 1.24786 0.99685 0.98319 0.97715 1.69808 1.41178 1.24645 1.20924 0.86039 0.81272 0.80669 0.77732 1.20596 1.21865 1.21763 1.21425 0.93607 0.88783 0.94564 1.21855 0.96075 0.94515 0.96415 1.21688 1.01115 0.97745 0.98062 1.21786 0.98523 1.00311 0.98870 1.06162 0.76928 0.73639 0.75181 1.93641 1.80823 1.70475 1.47508 1.93616 1.83758 1.74654 1.41946 0.92461 0.91372 0.90749 0.90459 0.88515 0.87047 0.86373 0.76695 0.86750 0.95897 0.93737 0.95975 0.95669 0.92897 0.92554 0.91668 0.92953 0.92280 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.00 11.38 59.85 0.68 1.69 16 2 N -1.00 -10.38 3.72 -120.56 -0.45 -10.82 16 3 C 0.08 0.65 6.83 -3.04 -0.02 0.63 16 4 C -0.11 -1.16 6.16 -24.65 -0.15 -1.31 16 5 C -0.59 -7.65 3.71 -26.50 -0.10 -7.75 16 6 H 0.16 1.63 8.14 -51.93 -0.42 1.21 16 7 C 0.54 9.48 6.80 -10.99 -0.07 9.41 16 8 O -0.51 -10.70 15.67 5.56 0.09 -10.62 16 9 N -0.70 -12.15 4.69 -51.72 -0.24 -12.39 16 10 C 0.12 2.31 2.56 -65.77 -0.17 2.15 16 11 H 0.09 1.76 7.63 -51.93 -0.40 1.37 16 12 C 0.15 3.52 5.27 -2.53 -0.01 3.50 16 13 N -0.60 -14.68 3.39 -170.07 -0.58 -15.25 16 14 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 15 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 18 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 C 0.14 2.79 6.40 -3.07 -0.02 2.77 16 23 C -0.09 -1.45 0.81 -152.68 -0.12 -1.57 16 24 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 25 C -0.14 -1.86 8.07 37.15 0.30 -1.56 16 26 S 2.59 35.16 5.83 -107.50 -0.63 34.54 16 27 O -0.94 -16.09 17.75 -57.41 -1.02 -17.11 16 28 O -0.95 -14.47 18.13 -57.41 -1.04 -15.51 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 1.37 7.28 -51.93 -0.38 0.99 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 6.06 6.89 -40.82 -0.28 5.78 16 37 H 0.11 3.17 5.87 -51.93 -0.30 2.86 16 38 H 0.02 0.60 7.80 -51.93 -0.41 0.19 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.42 7.77 -51.93 -0.40 0.02 16 41 H 0.03 0.50 7.85 -51.93 -0.41 0.09 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 45 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.28 383.03 -9.68 -45.96 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.50 Total: 4.84 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 0.37 Total: -0.20 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.71 Total: -64.36 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.97 Total: -43.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 35.16 SS G_CDS: -0.63 Total: 34.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.28 -9.68 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.000 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds