Wall clock time and date at job start Wed Apr 1 2020 03:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47067 * 126.30257 * 2 1 4 4 C 1.54315 * 109.97022 * 150.90100 * 3 2 1 5 5 C 1.55607 * 104.19243 * 45.50844 * 4 3 2 6 6 H 1.08996 * 111.20335 * 79.80643 * 5 4 3 7 7 C 1.50700 * 111.16772 * 204.05918 * 5 4 3 8 8 O 1.21278 * 119.99878 * 27.79452 * 7 5 4 9 9 N 1.34767 * 119.99989 * 207.78816 * 7 5 4 10 10 C 1.46507 * 120.00137 * 179.97438 * 9 7 5 11 11 H 1.08996 * 110.87977 * 37.43385 * 10 9 7 12 12 C 1.54910 * 111.00533 * 273.55006 * 10 9 7 13 13 N 1.47422 * 104.83090 * 278.93381 * 12 10 9 14 14 C 1.36932 * 125.64807 * 155.90685 * 13 12 10 15 15 H 1.08005 * 120.00434 * 179.97438 * 14 13 12 16 16 C 1.38816 * 119.99929 * 359.97429 * 14 13 12 17 17 N 1.31612 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47589 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47077 * 120.00472 * 18 16 14 21 21 H 1.48499 * 109.47166 * 239.99798 * 18 16 14 22 22 C 1.47025 * 108.70299 * 335.87349 * 13 12 10 23 23 C 1.54316 * 107.27488 * 1.05670 * 22 13 12 24 24 C 1.52999 * 110.72285 * 263.83324 * 23 22 13 25 25 C 1.52994 * 110.72153 * 140.55373 * 23 22 13 26 26 S 1.67006 * 126.30436 * 180.30650 * 2 1 3 27 27 O 1.42099 * 105.13087 * 298.89840 * 26 2 1 28 28 O 1.42101 * 105.13106 * 68.56490 * 26 2 1 29 29 H 1.09002 * 109.47391 * 269.68964 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.69020 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.69148 * 1 2 3 32 32 H 1.08994 * 109.35757 * 271.18420 * 3 2 1 33 33 H 1.08997 * 109.35340 * 30.82411 * 3 2 1 34 34 H 1.09001 * 110.65464 * 286.77557 * 4 3 2 35 35 H 1.09005 * 110.38700 * 164.10963 * 4 3 2 36 36 H 0.97007 * 120.00235 * 0.02562 * 9 7 5 37 37 H 1.09003 * 110.36586 * 37.76757 * 12 10 9 38 38 H 1.08994 * 110.36617 * 160.09317 * 12 10 9 39 39 H 0.97001 * 120.00212 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88374 * 120.48317 * 22 13 12 41 41 H 1.09004 * 109.87912 * 241.48283 * 22 13 12 42 42 H 1.08998 * 109.47113 * 173.51544 * 24 23 22 43 43 H 1.08995 * 109.47153 * 293.52216 * 24 23 22 44 44 H 1.09004 * 109.46757 * 53.52046 * 24 23 22 45 45 H 1.08993 * 109.47714 * 306.48703 * 25 23 22 46 46 H 1.09007 * 109.46768 * 66.48298 * 25 23 22 47 47 H 1.08999 * 109.47512 * 186.47890 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1852 0.0000 4 6 3.6690 0.8596 0.7053 5 6 4.0864 -0.5183 0.1150 6 1 4.5442 -0.4038 -0.8675 7 6 5.0025 -1.2582 1.0554 8 8 4.9346 -1.0593 2.2498 9 7 5.8972 -2.1410 0.5691 10 6 6.7882 -2.8599 1.4832 11 1 6.2698 -3.1209 2.4058 12 6 8.0651 -2.0339 1.7783 13 7 8.9447 -2.2719 0.6194 14 6 9.9439 -1.4391 0.1916 15 1 10.5356 -1.7047 -0.6721 16 6 10.1966 -0.2536 0.8680 17 7 9.4754 0.0703 1.9202 18 14 11.5603 0.8821 0.2848 19 1 12.2171 0.2941 -0.9102 20 1 10.9857 2.2053 -0.0676 21 1 12.5618 1.0501 1.3683 22 6 8.5718 -3.5519 -0.0005 23 6 7.3833 -4.1210 0.8027 24 6 7.8691 -5.1236 1.8513 25 6 6.3581 -4.7665 -0.1316 26 16 2.4538 -1.3459 -0.0072 27 8 2.1392 -2.0437 1.1900 28 8 2.2694 -1.9347 -1.2872 29 1 -0.3634 -0.0056 1.0276 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5091 32 1 2.5325 1.4889 -1.0281 33 1 1.8378 1.9992 0.5269 34 1 3.5255 0.7847 1.7833 35 1 4.4173 1.6170 0.4712 36 1 5.9518 -2.2998 -0.3863 37 1 7.8214 -0.9744 1.8582 38 1 8.5407 -2.3848 2.6940 39 1 9.6522 0.8986 2.3931 40 1 8.2752 -3.3895 -1.0367 41 1 9.4141 -4.2426 0.0398 42 1 7.0320 -5.4251 2.4809 43 1 8.2825 -5.9999 1.3521 44 1 8.6390 -4.6598 2.4681 45 1 6.0699 -4.0530 -0.9035 46 1 6.7966 -5.6489 -0.5980 47 1 5.4776 -5.0579 0.4409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977321831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:34 Heat of formation + Delta-G solvation = -89.672256 kcal Electronic energy + Delta-G solvation = -30490.307533 eV Core-core repulsion = 26414.494608 eV Total energy + Delta-G solvation = -4075.812926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.42224 -39.72539 -38.33204 -38.05887 -37.20497 -35.72803 -34.71765 -34.03947 -32.61489 -30.20539 -28.82991 -27.91610 -27.38727 -26.48062 -25.12319 -23.47660 -22.38909 -21.55567 -20.46976 -19.95209 -18.81812 -18.70029 -18.34432 -17.88693 -17.49964 -16.81879 -16.61347 -16.10365 -15.73839 -15.72261 -15.31313 -15.29275 -15.25122 -14.68302 -14.38761 -14.22492 -14.12084 -13.87279 -13.77153 -13.68490 -13.42356 -13.29829 -13.07296 -13.03116 -12.99364 -12.83844 -12.66667 -12.59938 -12.46781 -12.22510 -12.06965 -11.84577 -11.79218 -11.72474 -11.48694 -11.40129 -11.13401 -10.76849 -10.10487 -10.02867 -8.85267 -7.74986 -5.20318 -1.17504 1.32150 1.44302 1.45786 1.47063 1.57035 1.90691 2.35584 2.49277 2.79107 3.15926 3.34636 3.36357 3.50494 3.61034 3.67804 3.86772 3.93487 4.02874 4.11590 4.27246 4.36816 4.47820 4.60958 4.68199 4.73972 4.78405 4.80650 4.84024 4.90283 4.90376 4.96359 4.99525 5.02370 5.06245 5.16982 5.24134 5.30584 5.47201 5.50885 5.55251 5.60541 5.81957 6.31091 6.37004 7.04662 7.10267 7.78937 8.43019 9.25799 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003961 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.802592 B = 7067.853335 C = 8449.965170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.995 5.995 3 C 0.082 3.918 4 C -0.111 4.111 5 C -0.587 4.587 6 H 0.196 0.804 7 C 0.529 3.471 8 O -0.552 6.552 9 N -0.694 5.694 10 C 0.129 3.871 11 H 0.082 0.918 12 C 0.156 3.844 13 N -0.617 5.617 14 C -0.232 4.232 15 H 0.084 0.916 16 C -0.065 4.065 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.298 1.298 22 C 0.138 3.862 23 C -0.076 4.076 24 C -0.127 4.127 25 C -0.135 4.135 26 S 2.595 3.405 27 O -0.981 6.981 28 O -0.969 6.969 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.410 0.590 37 H 0.076 0.924 38 H -0.012 1.012 39 H 0.243 0.757 40 H 0.037 0.963 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 -0.918 -7.929 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.841 5.841 3 C -0.043 4.043 4 C -0.151 4.151 5 C -0.699 4.699 6 H 0.214 0.786 7 C 0.312 3.688 8 O -0.430 6.430 9 N -0.345 5.345 10 C 0.023 3.977 11 H 0.100 0.900 12 C 0.030 3.970 13 N -0.343 5.343 14 C -0.361 4.361 15 H 0.102 0.898 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.806 3.194 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.225 1.225 22 C 0.013 3.987 23 C -0.077 4.077 24 C -0.184 4.184 25 C -0.192 4.192 26 S 2.690 3.310 27 O -0.971 6.971 28 O -0.958 6.958 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.247 0.753 37 H 0.094 0.906 38 H 0.006 0.994 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.367 -1.603 -7.122 18.839 hybrid contribution 1.666 1.232 -0.019 2.072 sum -15.701 -0.371 -7.141 17.253 Atomic orbital electron populations 1.21548 0.74231 1.04600 1.02598 1.57012 1.14619 1.20808 1.91699 1.22394 0.88003 0.90127 1.03745 1.22858 0.98262 0.92125 1.01863 1.30924 1.17929 1.11316 1.09698 0.78646 1.19456 0.81456 0.79618 0.88249 1.90715 1.70653 1.64539 1.17100 1.45782 1.35488 1.41843 1.11402 1.22345 0.90340 0.92392 0.92590 0.89977 1.21941 0.87237 1.00101 0.87743 1.44690 1.37988 1.20149 1.31505 1.19473 1.08122 0.98946 1.09577 0.89819 1.25584 1.02087 1.00011 0.98109 1.70098 1.42771 1.24666 1.22235 0.85029 0.78435 0.78582 0.77381 1.18937 1.21913 1.22547 1.21641 0.94821 0.86846 0.95361 1.21850 0.95451 0.93583 0.96780 1.21695 1.00992 0.97962 0.97770 1.21798 0.97795 1.01200 0.98417 1.05722 0.77113 0.74139 0.74063 1.93587 1.81694 1.72567 1.49207 1.93588 1.84091 1.75808 1.42278 0.92170 0.91405 0.87345 0.87360 0.85716 0.89272 0.84926 0.75268 0.90642 0.99445 0.94669 0.94482 0.95421 0.91353 0.89964 0.94478 0.92189 0.89750 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.51 11.38 127.77 1.45 2.96 16 2 N -1.00 -18.37 3.72 -535.34 -1.99 -20.36 16 3 C 0.08 1.06 6.83 86.72 0.59 1.65 16 4 C -0.11 -2.23 6.16 31.94 0.20 -2.04 16 5 C -0.59 -14.54 3.71 30.75 0.11 -14.43 16 6 H 0.20 3.44 8.14 -2.39 -0.02 3.42 16 7 C 0.53 18.94 6.80 87.66 0.60 19.54 16 8 O -0.55 -24.35 15.67 -3.02 -0.05 -24.40 16 9 N -0.69 -24.23 4.69 -435.95 -2.04 -26.27 16 10 C 0.13 5.07 2.56 46.38 0.12 5.19 16 11 H 0.08 3.35 7.63 -2.39 -0.02 3.33 16 12 C 0.16 7.87 5.27 86.86 0.46 8.32 16 13 N -0.62 -30.61 3.39 -691.99 -2.35 -32.96 16 14 C -0.23 -12.62 10.27 84.04 0.86 -11.76 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 16 C -0.07 -3.66 5.49 84.86 0.47 -3.19 16 17 N -0.95 -56.95 10.09 21.65 0.22 -56.73 16 18 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 22 C 0.14 5.28 6.40 86.73 0.56 5.84 16 23 C -0.08 -2.42 0.81 -51.00 -0.04 -2.46 16 24 C -0.13 -3.68 8.41 71.98 0.61 -3.07 16 25 C -0.13 -3.25 8.07 71.98 0.58 -2.67 16 26 S 2.60 68.08 5.83 -56.49 -0.33 67.75 16 27 O -0.98 -34.27 17.75 -127.77 -2.27 -36.54 16 28 O -0.97 -28.08 18.13 -127.77 -2.32 -30.40 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 2.22 7.28 -2.39 -0.02 2.20 16 35 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.41 12.00 6.89 -92.70 -0.64 11.36 16 37 H 0.08 4.43 5.87 -2.39 -0.01 4.42 16 38 H -0.01 -0.68 7.80 -2.39 -0.02 -0.70 16 39 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.04 1.33 7.77 -2.39 -0.02 1.31 16 41 H 0.03 1.06 7.85 -2.38 -0.02 1.04 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.27 7.57 -2.38 -0.02 1.25 16 45 H 0.06 1.36 6.35 -2.39 -0.02 1.34 16 46 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -83.31 383.03 -2.20 -85.52 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.34 Total: 23.32 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.56 Total: 3.88 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -6.16 Total: -136.32 kcal Atomic # 8 Polarization: -86.70 SS G_CDS: -4.63 Total: -91.33 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 68.08 SS G_CDS: -0.33 Total: 67.75 kcal Total: -83.31 -2.20 -85.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.156 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds