Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.77782 * 2 1 4 4 C 1.54315 * 110.72100 * 236.75915 * 2 1 3 5 5 N 1.47028 * 107.27114 * 219.44440 * 4 2 1 6 6 C 1.36930 * 125.64937 * 178.98495 * 5 4 2 7 7 H 1.08004 * 120.00283 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00207 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99454 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00179 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47596 * 89.99641 * 10 8 6 12 12 H 1.48500 * 109.47038 * 209.99998 * 10 8 6 13 13 H 1.48506 * 109.47242 * 329.99620 * 10 8 6 14 14 C 1.47428 * 108.70148 * 358.93928 * 5 4 2 15 15 C 1.54916 * 104.82927 * 24.13088 * 14 5 4 16 16 H 1.08999 * 111.03037 * 204.90035 * 15 14 5 17 17 N 1.46502 * 111.00514 * 81.06458 * 15 14 5 18 18 C 1.34777 * 119.99666 * 92.80271 * 17 15 14 19 19 O 1.21594 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.47523 * 119.99406 * 180.02562 * 18 17 15 21 21 C 1.40095 * 119.93791 * 359.97438 * 20 18 17 22 22 C 1.36289 * 120.38880 * 179.97438 * 21 20 18 23 23 C 1.39856 * 120.04155 * 0.07849 * 22 21 20 24 24 N 1.35814 * 133.51717 * 179.97438 * 23 22 21 25 25 C 1.30774 * 108.79860 * 179.97438 * 24 23 22 26 26 O 1.35099 * 124.92464 * 179.97438 * 25 24 23 27 27 O 1.34323 * 110.15989 * 0.02562 * 25 24 23 28 28 C 1.35319 * 108.12265 * 359.97438 * 27 25 24 29 29 C 1.38101 * 133.76259 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.47378 * 296.76348 * 1 2 3 31 31 H 1.08999 * 109.47093 * 56.76552 * 1 2 3 32 32 H 1.09001 * 109.46761 * 176.76381 * 1 2 3 33 33 H 1.09002 * 109.46725 * 183.23504 * 3 2 1 34 34 H 1.08998 * 109.46833 * 303.23599 * 3 2 1 35 35 H 1.09001 * 109.47340 * 63.23615 * 3 2 1 36 36 H 1.09006 * 109.88655 * 338.85834 * 4 2 1 37 37 H 1.09001 * 109.88782 * 100.02797 * 4 2 1 38 38 H 0.96998 * 119.99653 * 179.97438 * 9 8 6 39 39 H 1.08990 * 110.36788 * 265.29299 * 14 5 4 40 40 H 1.08999 * 110.36462 * 142.96166 * 14 5 4 41 41 H 0.96997 * 120.00083 * 272.80427 * 17 15 14 42 42 H 1.07997 * 119.79944 * 359.97438 * 21 20 18 43 43 H 1.07996 * 119.97515 * 180.02562 * 22 21 20 44 44 H 0.96705 * 113.99888 * 90.02648 * 26 25 24 45 45 H 1.08004 * 120.18098 * 359.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2446 -1.5507 -0.7388 6 6 4.0045 -2.3968 -1.5016 7 1 3.7619 -2.5501 -2.5428 8 6 5.0866 -3.0576 -0.9365 9 7 5.3825 -2.8705 0.3322 10 14 6.1236 -4.2113 -1.9772 11 1 7.2336 -3.4496 -2.6042 12 1 6.6837 -5.2848 -1.1175 13 1 5.2780 -4.8167 -3.0373 14 6 3.4633 -1.2497 0.6877 15 6 2.0789 -0.7954 1.2139 16 1 2.1843 -0.1519 2.0873 17 7 1.2271 -1.9487 1.5146 18 6 1.2025 -2.4616 2.7607 19 8 1.8876 -1.9673 3.6352 20 6 0.3451 -3.6233 3.0633 21 6 -0.4433 -4.1921 2.0545 22 6 -1.2383 -5.2658 2.3237 23 6 -1.2723 -5.8060 3.6133 24 7 -1.9452 -6.8433 4.1753 25 6 -1.6127 -6.9271 5.4373 26 8 -2.0920 -7.8458 6.3040 27 8 -0.7263 -5.9666 5.7472 28 6 -0.4849 -5.2405 4.6310 29 6 0.3201 -4.1530 4.3544 30 1 -0.3634 0.4628 0.9176 31 1 -0.3633 0.5632 -0.8596 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1610 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8596 35 1 1.7691 1.9344 0.9176 36 1 1.3130 -1.4759 -1.5775 37 1 2.3742 -0.1025 -1.9977 38 1 6.1385 -3.3325 0.7271 39 1 4.1931 -0.4478 0.7986 40 1 3.7959 -2.1425 1.2171 41 1 0.6808 -2.3433 0.8168 42 1 -0.4209 -3.7771 1.0577 43 1 -1.8431 -5.6992 1.5409 44 1 -1.5684 -8.6578 6.3459 45 1 0.9269 -3.7147 5.1330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977630032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = 3.575277 kcal Electronic energy + Delta-G solvation = -30428.611670 eV Core-core repulsion = 26221.398310 eV Total energy + Delta-G solvation = -4207.213360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.54056 -40.08831 -38.74818 -38.15006 -37.18687 -34.85892 -33.90454 -33.17942 -30.99308 -30.73611 -29.94832 -28.03648 -26.82597 -25.64156 -24.47426 -23.77548 -23.16576 -22.16831 -21.08657 -20.10762 -19.58710 -18.89054 -18.25068 -17.80502 -17.34658 -16.74720 -16.26180 -15.75543 -15.27572 -14.77996 -14.74412 -14.41505 -14.24026 -14.03554 -13.79287 -13.76500 -13.50037 -13.21130 -12.81843 -12.64428 -12.57540 -12.21477 -11.94412 -11.81037 -11.69995 -11.51026 -11.30821 -11.20108 -11.00965 -10.80577 -10.80053 -10.45519 -10.22755 -10.01018 -9.85357 -9.71784 -9.65809 -9.15303 -8.74135 -8.68662 -8.38878 -6.84087 -5.65597 -3.08570 0.10367 0.94490 1.50667 1.88750 2.93592 3.05718 3.38393 3.43391 3.45774 3.49606 3.75352 4.16078 4.46732 4.53765 4.70398 4.80823 4.91839 4.96391 5.05649 5.21428 5.26067 5.37832 5.50213 5.59368 5.68745 5.76673 5.78775 5.86232 5.94058 6.00135 6.01348 6.08326 6.15887 6.22425 6.25676 6.37611 6.46660 6.57181 6.63576 6.66231 6.68836 6.93389 7.17105 7.44858 7.60082 7.81850 7.92162 8.35849 8.53774 9.19634 9.81251 10.44972 11.37102 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.003182 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.347398 B = 8798.291010 C =10211.734724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.145 3.855 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.690 5.690 18 C 0.559 3.441 19 O -0.536 6.536 20 C -0.093 4.093 21 C -0.081 4.081 22 C -0.064 4.064 23 C 0.048 3.952 24 N -0.465 5.465 25 C 0.420 3.580 26 O -0.408 6.408 27 O -0.221 6.221 28 C 0.010 3.990 29 C -0.028 4.028 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.113 0.887 41 H 0.397 0.603 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.421 0.579 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -2.923 6.570 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.020 3.980 15 C 0.017 3.983 16 H 0.109 0.891 17 N -0.340 5.340 18 C 0.345 3.655 19 O -0.414 6.414 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.083 4.083 23 C -0.065 4.065 24 N -0.209 5.209 25 C 0.171 3.829 26 O -0.216 6.216 27 O -0.114 6.114 28 C -0.039 4.039 29 C -0.047 4.047 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.131 0.869 41 H 0.233 0.767 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.282 0.718 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.303 -2.728 7.100 17.089 hybrid contribution 1.134 -1.001 -0.414 1.568 sum -14.169 -3.729 6.686 16.105 Atomic orbital electron populations 1.21722 0.94563 1.01192 1.01393 1.21856 0.94876 0.95796 0.96341 1.21687 1.01940 0.94050 1.00935 1.21425 0.90305 0.92987 0.93687 1.44465 1.30673 1.50267 1.07309 1.19018 1.06479 1.17011 0.92842 0.90559 1.24783 0.98735 1.00574 0.96324 1.69793 1.29926 1.45999 1.10774 0.86122 0.80355 0.80332 0.78946 1.21669 1.21734 1.20746 1.22326 0.89103 1.01447 0.85148 1.22603 0.93203 0.85899 0.96554 0.89100 1.45675 1.45458 1.32831 1.10054 1.17750 0.81844 0.82792 0.83116 1.90789 1.42969 1.61127 1.46504 1.19867 0.99117 0.97728 0.92989 1.20983 0.94596 0.95189 0.99344 1.19934 0.99571 0.95535 0.93290 1.19744 0.96685 0.94174 0.95947 1.71002 1.26112 1.19903 1.03840 1.22499 0.87084 0.87675 0.85688 1.84878 1.49754 1.27566 1.59448 1.84499 1.52214 1.38679 1.36021 1.19761 1.02686 0.97763 0.83725 1.19886 0.96206 0.91407 0.97243 0.92746 0.92667 0.93001 0.91723 0.92674 0.93020 0.96030 0.95794 0.93681 0.96005 0.86908 0.76677 0.83859 0.83751 0.71771 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.07 37.16 0.30 -1.30 16 2 C -0.09 -1.36 0.80 -152.68 -0.12 -1.49 16 3 C -0.13 -1.85 8.41 37.16 0.31 -1.53 16 4 C 0.14 2.69 6.41 -3.07 -0.02 2.67 16 5 N -0.60 -14.37 3.39 -170.07 -0.58 -14.95 16 6 C -0.23 -6.01 10.27 -15.06 -0.15 -6.17 16 7 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 10 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.15 3.42 5.27 -2.52 -0.01 3.41 16 15 C 0.12 2.23 2.67 -65.78 -0.18 2.06 16 16 H 0.09 1.69 7.44 -51.93 -0.39 1.31 16 17 N -0.69 -11.33 4.49 -52.77 -0.24 -11.57 16 18 C 0.56 9.61 7.76 -12.48 -0.10 9.52 16 19 O -0.54 -10.98 15.97 5.28 0.08 -10.90 16 20 C -0.09 -1.33 5.88 -104.91 -0.62 -1.95 16 21 C -0.08 -0.95 9.46 -39.59 -0.37 -1.32 16 22 C -0.06 -0.73 10.03 -39.68 -0.40 -1.13 16 23 C 0.05 0.62 7.23 -84.63 -0.61 0.01 16 24 N -0.47 -5.99 11.36 -12.73 -0.14 -6.13 16 25 C 0.42 4.70 9.54 52.31 0.50 5.19 16 26 O -0.41 -3.00 13.62 -40.30 -0.55 -3.55 16 27 O -0.22 -2.79 10.79 -20.53 -0.22 -3.01 16 28 C 0.01 0.14 7.40 -38.76 -0.29 -0.15 16 29 C -0.03 -0.39 9.60 -39.13 -0.38 -0.76 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 33 H 0.06 1.06 7.57 -51.93 -0.39 0.67 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.40 7.77 -51.93 -0.40 -0.01 16 37 H 0.02 0.46 7.84 -51.93 -0.41 0.06 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.02 0.56 7.80 -51.93 -0.41 0.16 16 40 H 0.11 3.11 5.87 -51.93 -0.30 2.81 16 41 H 0.40 5.70 5.18 -40.82 -0.21 5.49 16 42 H 0.14 1.38 6.36 -52.49 -0.33 1.05 16 43 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.42 0.54 9.06 45.56 0.41 0.95 16 45 H 0.15 2.10 7.64 -52.48 -0.40 1.69 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -34.12 370.66 -7.58 -41.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.83 Total: 5.27 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.23 Total: 6.74 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.40 Total: -58.57 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.69 Total: -17.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.12 -7.58 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977630032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.274 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds