Wall clock time and date at job start Wed Apr 1 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99940 * 2 1 4 4 H 1.08002 * 120.00025 * 204.01338 * 3 2 1 5 5 C 1.38813 * 119.99779 * 24.01227 * 3 2 1 6 6 N 1.31613 * 120.00500 * 15.42438 * 5 3 2 7 7 Si 1.86800 * 119.99635 * 195.42465 * 5 3 2 8 8 H 1.48503 * 109.47245 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47380 * 120.00105 * 7 5 3 10 10 H 1.48508 * 109.47213 * 239.99905 * 7 5 3 11 11 C 1.46496 * 119.99849 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.77861 * 178.21346 * 11 2 1 13 13 C 1.55153 * 110.71891 * 301.44854 * 11 2 1 14 14 C 1.54917 * 101.58194 * 153.86698 * 13 11 2 15 15 N 1.47422 * 104.82990 * 322.99520 * 14 13 11 16 16 C 1.34775 * 125.64834 * 204.09174 * 15 14 13 17 17 O 1.21282 * 120.00371 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99941 * 0.02562 * 16 15 14 19 19 C 1.52995 * 109.47432 * 175.53839 * 18 16 15 20 20 C 1.53005 * 108.57942 * 298.23589 * 19 18 16 21 21 C 1.53200 * 108.50942 * 180.31207 * 19 18 16 22 22 C 1.55550 * 106.24252 * 266.53748 * 21 19 18 23 23 S 1.83901 * 99.64367 * 323.01282 * 22 21 19 24 24 O 1.42101 * 111.46466 * 284.14482 * 23 22 21 25 25 O 1.42097 * 111.46823 * 144.08677 * 23 22 21 26 26 N 1.46452 * 108.64772 * 56.22988 * 19 18 16 27 27 C 1.47024 * 108.70653 * 24.35180 * 15 14 13 28 28 H 1.09004 * 109.46826 * 275.26322 * 1 2 3 29 29 H 1.09000 * 109.47184 * 35.25291 * 1 2 3 30 30 H 1.08989 * 109.47306 * 155.26129 * 1 2 3 31 31 H 0.96998 * 120.00010 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00750 * 35.79638 * 13 11 2 33 33 H 1.08996 * 111.00702 * 271.93988 * 13 11 2 34 34 H 1.09002 * 110.36794 * 204.15248 * 14 13 11 35 35 H 1.09001 * 110.36385 * 81.82886 * 14 13 11 36 36 H 1.09001 * 109.47004 * 55.53963 * 18 16 15 37 37 H 1.09004 * 109.46998 * 295.54353 * 18 16 15 38 38 H 1.09005 * 109.46728 * 174.30758 * 20 19 18 39 39 H 1.09003 * 109.46799 * 294.30667 * 20 19 18 40 40 H 1.08993 * 109.47172 * 54.30463 * 20 19 18 41 41 H 1.09003 * 110.09972 * 25.73960 * 21 19 18 42 42 H 1.09000 * 110.09839 * 147.34211 * 21 19 18 43 43 H 1.08998 * 111.37199 * 205.41048 * 22 21 19 44 44 H 1.09006 * 111.36942 * 80.61574 * 22 21 19 45 45 H 0.97004 * 126.08036 * 299.18260 * 26 19 18 46 46 H 1.08996 * 109.88311 * 118.12905 * 27 15 14 47 47 H 1.08996 * 109.88174 * 239.30237 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1596 1.2264 -0.3806 5 6 1.5457 2.3361 0.4892 6 7 0.4558 2.2465 1.2216 7 14 2.2798 4.0109 0.1080 8 1 3.4958 3.8400 -0.7272 9 1 1.2847 4.8318 -0.6277 10 1 2.6429 4.6926 1.3764 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0943 -0.0323 13 6 1.8162 -2.1232 1.2371 14 6 2.1009 -3.5572 0.7246 15 7 1.6925 -3.5397 -0.6918 16 6 1.3252 -4.6149 -1.4167 17 8 1.0076 -4.4825 -2.5797 18 6 1.3090 -5.9817 -0.7821 19 6 0.7532 -7.0004 -1.7791 20 6 -0.6852 -6.6097 -2.1244 21 6 0.7393 -8.3784 -1.1097 22 6 2.0798 -9.0647 -1.4990 23 16 2.2478 -8.4553 -3.2260 24 8 1.3710 -9.1431 -4.1077 25 8 3.6061 -8.2039 -3.5589 26 7 1.5589 -6.9475 -3.0009 27 6 1.7583 -2.1560 -1.1845 28 1 -0.3633 0.0943 1.0234 29 1 -0.3633 0.8392 -0.5931 30 1 -0.3633 -0.9332 -0.4300 31 1 0.0336 3.0502 1.5631 32 1 0.7625 -1.9998 1.4875 33 1 2.4499 -1.8801 2.0899 34 1 1.5087 -4.2835 1.2813 35 1 3.1630 -3.7868 0.8104 36 1 0.6786 -5.9622 0.1069 37 1 2.3238 -6.2641 -0.5017 38 1 -1.0615 -7.2660 -2.9092 39 1 -1.3112 -6.7078 -1.2375 40 1 -0.7077 -5.5771 -2.4725 41 1 0.6752 -8.2684 -0.0272 42 1 -0.1025 -8.9650 -1.4775 43 1 1.9937 -10.1509 -1.4678 44 1 2.9012 -8.7158 -0.8731 45 1 1.6724 -6.1757 -3.5774 46 1 2.4854 -2.0847 -1.9933 47 1 0.7762 -1.8410 -1.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980265319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:24 Heat of formation + Delta-G solvation = -62.944147 kcal Electronic energy + Delta-G solvation = -29562.897170 eV Core-core repulsion = 25488.243262 eV Total energy + Delta-G solvation = -4074.653908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.46318 -38.65740 -37.33391 -36.96646 -36.06732 -34.85840 -32.08682 -31.86543 -30.80703 -29.87305 -28.75216 -27.31397 -26.08974 -24.56565 -23.52297 -22.36919 -20.94168 -19.74410 -19.38392 -19.13462 -17.77436 -17.10953 -16.96710 -16.65528 -16.13003 -15.97912 -15.50098 -15.01224 -14.81617 -14.52796 -14.40344 -13.93336 -13.66133 -13.53904 -13.36841 -13.07329 -12.94367 -12.52771 -12.43130 -12.36454 -12.31817 -12.19506 -12.09327 -11.87186 -11.72481 -11.51694 -11.41305 -11.17669 -11.05379 -10.83935 -10.83305 -10.63676 -10.54650 -10.28399 -9.93869 -9.92811 -9.65610 -9.57450 -8.63997 -8.40550 -6.86019 -5.82282 -3.29932 0.00875 2.38462 2.69421 3.07489 3.33160 3.34427 3.41465 3.43245 3.59817 3.84622 4.10679 4.26688 4.42120 4.53125 4.59477 4.81769 4.94922 4.95944 5.04783 5.12152 5.14821 5.22559 5.31414 5.33843 5.42413 5.47839 5.50835 5.68443 5.74235 5.83735 5.88871 5.94235 6.21404 6.27416 6.32396 6.48539 6.56709 6.72864 6.80992 7.14587 7.25041 7.61732 7.71228 7.73612 8.26304 8.31048 9.12611 9.75435 10.24398 11.22309 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.002322 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.473137 B =12056.976665 C =12248.168668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.097 3.903 15 N -0.610 5.610 16 C 0.529 3.471 17 O -0.542 6.542 18 C -0.146 4.146 19 C 0.158 3.842 20 C -0.166 4.166 21 C -0.116 4.116 22 C -0.596 4.596 23 S 2.563 3.437 24 O -0.956 6.956 25 O -0.963 6.963 26 N -1.076 6.076 27 C 0.086 3.914 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.003 0.997 31 H 0.253 0.747 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.444 0.556 46 H 0.061 0.939 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 -23.542 0.797 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.026 4.026 15 N -0.343 5.343 16 C 0.318 3.682 17 O -0.421 6.421 18 C -0.188 4.188 19 C 0.067 3.933 20 C -0.224 4.224 21 C -0.156 4.156 22 C -0.726 4.726 23 S 2.657 3.343 24 O -0.945 6.945 25 O -0.952 6.952 26 N -0.847 5.847 27 C -0.038 4.038 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.290 0.710 46 H 0.079 0.921 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.603 -23.801 -0.646 23.818 hybrid contribution 0.170 1.441 0.559 1.555 sum 0.773 -22.360 -0.087 22.374 Atomic orbital electron populations 1.20792 0.82596 0.95649 0.99633 1.43853 1.01771 0.99913 1.84989 1.19233 0.99206 0.85387 1.35331 0.91239 1.25024 0.98121 0.98646 0.97506 1.70074 1.21619 1.27464 1.35425 0.86194 0.78523 0.84194 0.77646 1.20211 1.21534 1.21699 1.21305 0.96370 0.86025 0.90115 0.90376 1.23388 1.02906 0.92460 1.00377 1.22407 0.99423 0.99543 0.81221 1.48551 1.65423 1.07913 1.12450 1.20030 0.76897 0.85049 0.86220 1.90553 1.49117 1.85645 1.16793 1.22241 1.03966 0.92883 0.99716 1.20264 0.93854 0.94249 0.84894 1.22421 0.92932 1.05183 1.01898 1.22527 0.95662 0.92877 1.04497 1.30801 1.06174 1.10979 1.24679 1.06549 0.74503 0.75706 0.77505 1.93650 1.66228 1.74040 1.60590 1.93616 1.35400 1.83473 1.82720 1.55167 1.64032 1.30772 1.34746 1.22765 1.02359 0.79733 0.98976 0.94759 0.94241 0.97818 0.93692 0.90612 0.90337 0.91337 0.91540 0.87954 0.88478 0.91606 0.92032 0.89297 0.86881 0.88016 0.84194 0.84056 0.70962 0.92077 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.70 59.85 0.46 4.15 16 2 N -0.58 -13.74 2.93 -171.39 -0.50 -14.25 16 3 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 5 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 6 N -0.90 -25.32 10.91 55.49 0.61 -24.72 16 7 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.21 3.43 -66.10 -0.23 2.98 16 12 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 13 C -0.15 -2.32 6.65 -24.58 -0.16 -2.48 16 14 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 15 N -0.61 -8.54 3.33 -170.51 -0.57 -9.11 16 16 C 0.53 6.96 7.24 -10.98 -0.08 6.88 16 17 O -0.54 -8.64 12.20 5.56 0.07 -8.57 16 18 C -0.15 -1.21 3.74 -27.88 -0.10 -1.32 16 19 C 0.16 1.29 0.83 -131.74 -0.11 1.18 16 20 C -0.17 -1.52 8.25 37.16 0.31 -1.21 16 21 C -0.12 -0.54 5.54 -25.27 -0.14 -0.68 16 22 C -0.60 -2.74 7.65 38.51 0.29 -2.44 16 23 S 2.56 24.57 6.47 -107.50 -0.70 23.87 16 24 O -0.96 -12.20 18.14 -57.37 -1.04 -13.24 16 25 O -0.96 -12.85 18.14 -57.37 -1.04 -13.89 16 26 N -1.08 -11.12 5.64 0.60 0.00 -11.12 16 27 C 0.09 1.48 6.40 -3.06 -0.02 1.46 16 28 H 0.03 0.86 7.30 -51.93 -0.38 0.48 16 29 H 0.04 1.00 7.48 -51.93 -0.39 0.62 16 30 H 0.00 0.07 6.29 -51.94 -0.33 -0.26 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.08 1.28 7.28 -51.93 -0.38 0.91 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.61 7.34 -51.93 -0.38 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.62 7.59 -51.93 -0.39 0.22 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.09 1.09 5.65 -51.93 -0.29 0.79 16 41 H 0.11 0.26 7.74 -51.93 -0.40 -0.14 16 42 H 0.10 0.40 7.83 -51.93 -0.41 -0.01 16 43 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.44 5.39 6.90 -40.36 -0.28 5.11 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 1.42 6.13 -51.93 -0.32 1.10 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -35.44 374.20 -9.88 -45.31 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.29 Total: 1.18 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.03 Total: 2.69 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.46 Total: -59.19 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -2.01 Total: -35.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 24.57 SS G_CDS: -0.70 Total: 23.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.44 -9.88 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.631 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds