Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99940 * 2 1 4 4 H 1.08002 * 120.00025 * 204.01338 * 3 2 1 5 5 C 1.38813 * 119.99779 * 24.01227 * 3 2 1 6 6 N 1.31613 * 120.00500 * 15.42438 * 5 3 2 7 7 Si 1.86800 * 119.99635 * 195.42465 * 5 3 2 8 8 H 1.48503 * 109.47245 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47380 * 120.00105 * 7 5 3 10 10 H 1.48508 * 109.47213 * 239.99905 * 7 5 3 11 11 C 1.46496 * 119.99849 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.77861 * 178.21346 * 11 2 1 13 13 C 1.55153 * 110.71891 * 301.44854 * 11 2 1 14 14 C 1.54917 * 101.58194 * 153.86698 * 13 11 2 15 15 N 1.47422 * 104.82990 * 322.99520 * 14 13 11 16 16 C 1.34775 * 125.64834 * 204.09174 * 15 14 13 17 17 O 1.21282 * 120.00371 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99941 * 0.02562 * 16 15 14 19 19 C 1.52995 * 109.47432 * 175.53839 * 18 16 15 20 20 C 1.53005 * 108.57942 * 298.23589 * 19 18 16 21 21 C 1.53200 * 108.50942 * 180.31207 * 19 18 16 22 22 C 1.55550 * 106.24252 * 266.53748 * 21 19 18 23 23 S 1.83901 * 99.64367 * 323.01282 * 22 21 19 24 24 O 1.42101 * 111.46466 * 284.14482 * 23 22 21 25 25 O 1.42097 * 111.46823 * 144.08677 * 23 22 21 26 26 N 1.46452 * 108.64772 * 56.22988 * 19 18 16 27 27 C 1.47024 * 108.70653 * 24.35180 * 15 14 13 28 28 H 1.09004 * 109.46826 * 275.26322 * 1 2 3 29 29 H 1.09000 * 109.47184 * 35.25291 * 1 2 3 30 30 H 1.08989 * 109.47306 * 155.26129 * 1 2 3 31 31 H 0.96998 * 120.00010 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00750 * 35.79638 * 13 11 2 33 33 H 1.08996 * 111.00702 * 271.93988 * 13 11 2 34 34 H 1.09002 * 110.36794 * 204.15248 * 14 13 11 35 35 H 1.09001 * 110.36385 * 81.82886 * 14 13 11 36 36 H 1.09001 * 109.47004 * 55.53963 * 18 16 15 37 37 H 1.09004 * 109.46998 * 295.54353 * 18 16 15 38 38 H 1.09005 * 109.46728 * 174.30758 * 20 19 18 39 39 H 1.09003 * 109.46799 * 294.30667 * 20 19 18 40 40 H 1.08993 * 109.47172 * 54.30463 * 20 19 18 41 41 H 1.09003 * 110.09972 * 25.73960 * 21 19 18 42 42 H 1.09000 * 110.09839 * 147.34211 * 21 19 18 43 43 H 1.08998 * 111.37199 * 205.41048 * 22 21 19 44 44 H 1.09006 * 111.36942 * 80.61574 * 22 21 19 45 45 H 0.97004 * 126.08036 * 299.18260 * 26 19 18 46 46 H 1.08996 * 109.88311 * 118.12905 * 27 15 14 47 47 H 1.08996 * 109.88174 * 239.30237 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1596 1.2264 -0.3806 5 6 1.5457 2.3361 0.4892 6 7 0.4558 2.2465 1.2216 7 14 2.2798 4.0109 0.1080 8 1 3.4958 3.8400 -0.7272 9 1 1.2847 4.8318 -0.6277 10 1 2.6429 4.6926 1.3764 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0943 -0.0323 13 6 1.8162 -2.1232 1.2371 14 6 2.1009 -3.5572 0.7246 15 7 1.6925 -3.5397 -0.6918 16 6 1.3252 -4.6149 -1.4167 17 8 1.0076 -4.4825 -2.5797 18 6 1.3090 -5.9817 -0.7821 19 6 0.7532 -7.0004 -1.7791 20 6 -0.6852 -6.6097 -2.1244 21 6 0.7393 -8.3784 -1.1097 22 6 2.0798 -9.0647 -1.4990 23 16 2.2478 -8.4553 -3.2260 24 8 1.3710 -9.1431 -4.1077 25 8 3.6061 -8.2039 -3.5589 26 7 1.5589 -6.9475 -3.0009 27 6 1.7583 -2.1560 -1.1845 28 1 -0.3633 0.0943 1.0234 29 1 -0.3633 0.8392 -0.5931 30 1 -0.3633 -0.9332 -0.4300 31 1 0.0336 3.0502 1.5631 32 1 0.7625 -1.9998 1.4875 33 1 2.4499 -1.8801 2.0899 34 1 1.5087 -4.2835 1.2813 35 1 3.1630 -3.7868 0.8104 36 1 0.6786 -5.9622 0.1069 37 1 2.3238 -6.2641 -0.5017 38 1 -1.0615 -7.2660 -2.9092 39 1 -1.3112 -6.7078 -1.2375 40 1 -0.7077 -5.5771 -2.4725 41 1 0.6752 -8.2684 -0.0272 42 1 -0.1025 -8.9650 -1.4775 43 1 1.9937 -10.1509 -1.4678 44 1 2.9012 -8.7158 -0.8731 45 1 1.6724 -6.1757 -3.5774 46 1 2.4854 -2.0847 -1.9933 47 1 0.7762 -1.8410 -1.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980265319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = -91.419975 kcal Electronic energy + Delta-G solvation = -29564.131974 eV Core-core repulsion = 25488.243262 eV Total energy + Delta-G solvation = -4075.888712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39484 -39.66549 -38.28943 -37.91214 -36.88303 -36.48432 -33.51401 -32.58875 -31.78438 -31.10561 -29.78289 -28.41091 -28.04734 -25.34910 -24.73793 -23.71886 -21.63672 -20.82918 -20.44180 -20.15186 -18.94428 -18.49958 -17.91153 -17.56397 -17.34626 -16.75052 -16.55290 -16.28889 -15.78901 -15.65438 -15.21489 -15.12854 -14.96876 -14.48563 -14.36246 -14.17020 -14.00990 -13.85204 -13.42896 -13.34487 -13.18979 -13.04331 -13.02925 -12.90738 -12.89310 -12.61332 -12.55769 -12.47020 -12.35023 -12.23894 -12.09850 -12.04591 -11.85546 -11.82285 -11.43690 -11.36560 -10.69118 -10.60719 -10.31345 -9.54563 -8.80167 -7.85743 -5.34598 -0.62444 1.45082 1.48138 1.57375 1.70280 1.76529 2.05189 2.50446 2.73760 3.09885 3.26993 3.37700 3.56492 3.60014 3.67426 3.73264 3.89672 4.03796 4.15445 4.30417 4.34753 4.39343 4.50520 4.52469 4.66732 4.68179 4.72338 4.74492 4.81875 4.89128 4.95180 4.96281 5.05459 5.08811 5.17223 5.28838 5.32141 5.37530 5.43167 5.55196 5.64100 5.66232 6.26641 6.30774 6.69569 7.11756 7.28498 7.82868 8.27675 9.17356 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.002322 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.473137 B =12056.976665 C =12248.168668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.071 0.929 5 C -0.047 4.047 6 N -0.932 5.932 7 Si 0.965 3.035 8 H -0.268 1.268 9 H -0.294 1.294 10 H -0.289 1.289 11 C 0.163 3.837 12 H 0.077 0.923 13 C -0.143 4.143 14 C 0.107 3.893 15 N -0.615 5.615 16 C 0.519 3.481 17 O -0.579 6.579 18 C -0.140 4.140 19 C 0.149 3.851 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.547 4.547 23 S 2.542 3.458 24 O -1.004 7.004 25 O -1.013 7.013 26 N -1.089 6.089 27 C 0.099 3.901 28 H 0.013 0.987 29 H 0.007 0.993 30 H 0.025 0.975 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.158 0.842 42 H 0.111 0.889 43 H 0.174 0.826 44 H 0.172 0.828 45 H 0.431 0.569 46 H 0.047 0.953 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -26.688 3.796 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.397 4.397 4 H 0.088 0.912 5 C -0.243 4.243 6 N -0.578 5.578 7 Si 0.793 3.207 8 H -0.192 1.192 9 H -0.221 1.221 10 H -0.216 1.216 11 C 0.054 3.946 12 H 0.095 0.905 13 C -0.183 4.183 14 C -0.015 4.015 15 N -0.349 5.349 16 C 0.310 3.690 17 O -0.460 6.460 18 C -0.181 4.181 19 C 0.059 3.941 20 C -0.224 4.224 21 C -0.153 4.153 22 C -0.683 4.683 23 S 2.642 3.358 24 O -0.993 6.993 25 O -1.003 7.003 26 N -0.856 5.856 27 C -0.026 4.026 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.176 0.824 42 H 0.130 0.870 43 H 0.192 0.808 44 H 0.189 0.811 45 H 0.274 0.726 46 H 0.066 0.934 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.397 -26.996 2.311 27.130 hybrid contribution -0.095 2.368 -0.401 2.404 sum 1.302 -24.627 1.910 24.736 Atomic orbital electron populations 1.20436 0.83054 0.95283 0.97767 1.44006 1.01805 1.01121 1.85432 1.19536 0.99246 0.86750 1.34193 0.91170 1.25723 0.98865 1.01695 0.98001 1.70207 1.22974 1.27785 1.36812 0.85249 0.77851 0.80300 0.77275 1.19242 1.22149 1.21617 1.21491 0.95789 0.84806 0.92475 0.90521 1.23207 1.01834 0.94528 0.98723 1.22539 1.01786 0.97569 0.79560 1.48657 1.66097 1.06483 1.13621 1.21126 0.75486 0.86484 0.85911 1.90563 1.50272 1.86353 1.18811 1.22405 1.06613 0.88784 1.00288 1.20617 0.92451 0.96778 0.84281 1.22393 0.94725 1.02546 1.02770 1.22718 0.95687 0.90216 1.06652 1.30611 1.07368 1.12938 1.17371 1.06972 0.73001 0.75420 0.80378 1.93584 1.66615 1.74544 1.64576 1.93545 1.37461 1.84205 1.85114 1.55226 1.64681 1.30123 1.35609 1.22278 1.00133 0.82236 0.97973 0.96862 0.97445 0.95671 0.94203 0.92342 0.89744 0.86972 0.89035 0.84171 0.85470 0.92555 0.89281 0.93072 0.82372 0.87019 0.80807 0.81055 0.72615 0.93427 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 7.70 127.77 0.98 9.69 16 2 N -0.60 -28.93 2.93 -696.14 -2.04 -30.97 16 3 C -0.27 -14.26 9.58 84.03 0.81 -13.46 16 4 H 0.07 3.65 7.86 -2.91 -0.02 3.63 16 5 C -0.05 -2.58 5.05 84.86 0.43 -2.15 16 6 N -0.93 -53.79 10.91 21.65 0.24 -53.55 16 7 Si 0.96 44.40 29.58 68.60 2.03 46.43 16 8 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 C 0.16 6.04 3.43 46.18 0.16 6.19 16 12 H 0.08 2.83 7.94 -2.38 -0.02 2.81 16 13 C -0.14 -4.10 6.65 31.99 0.21 -3.88 16 14 C 0.11 2.00 6.69 86.86 0.58 2.58 16 15 N -0.62 -15.88 3.33 -811.77 -2.70 -18.58 16 16 C 0.52 12.57 7.24 87.66 0.63 13.20 16 17 O -0.58 -18.76 12.20 -3.04 -0.04 -18.79 16 18 C -0.14 -1.60 3.74 29.85 0.11 -1.49 16 19 C 0.15 1.91 0.83 3.68 0.00 1.92 16 20 C -0.17 -2.74 8.25 71.98 0.59 -2.15 16 21 C -0.11 -0.35 5.54 31.54 0.17 -0.18 16 22 C -0.55 -1.85 7.65 72.86 0.56 -1.29 16 23 S 2.54 46.39 6.47 -56.49 -0.37 46.03 16 24 O -1.00 -26.15 18.14 -127.81 -2.32 -28.47 16 25 O -1.01 -27.42 18.14 -127.81 -2.32 -29.74 16 26 N -1.09 -21.79 5.64 -152.03 -0.86 -22.65 16 27 C 0.10 3.46 6.40 86.73 0.56 4.01 16 28 H 0.01 0.69 7.30 -2.38 -0.02 0.67 16 29 H 0.01 0.37 7.48 -2.39 -0.02 0.35 16 30 H 0.02 1.08 6.29 -2.39 -0.02 1.06 16 31 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 32 H 0.06 1.89 7.28 -2.39 -0.02 1.88 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 1.22 7.34 -2.39 -0.02 1.20 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.14 0.61 7.59 -2.39 -0.02 0.60 16 37 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 40 H 0.05 1.26 5.65 -2.39 -0.01 1.24 16 41 H 0.16 -0.73 7.74 -2.39 -0.02 -0.74 16 42 H 0.11 0.25 7.83 -2.39 -0.02 0.23 16 43 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.17 -0.22 8.14 -2.38 -0.02 -0.24 16 45 H 0.43 11.08 6.90 -92.99 -0.64 10.44 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.04 1.78 6.13 -2.39 -0.01 1.77 16 Total: -1.00 -85.91 374.20 -2.23 -88.14 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.34 Total: 9.16 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.80 Total: 13.01 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -5.36 Total: -125.75 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -4.67 Total: -77.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 46.39 SS G_CDS: -0.37 Total: 46.03 kcal Total: -85.91 -2.23 -88.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.281 kcal (2) G-P(sol) polarization free energy of solvation -85.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds