Wall clock time and date at job start Wed Apr 1 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.88448 * 2 1 4 4 C 1.55126 * 111.19310 * 236.06849 * 2 1 3 5 5 N 1.47426 * 104.72303 * 279.18872 * 4 2 1 6 6 C 1.34776 * 125.64913 * 155.81845 * 5 4 2 7 7 O 1.21571 * 119.99684 * 5.05750 * 6 5 4 8 8 C 1.47707 * 120.00032 * 185.05966 * 6 5 4 9 9 C 1.39989 * 119.96711 * 172.05517 * 8 6 5 10 10 C 1.36596 * 120.46258 * 180.02562 * 9 8 6 11 11 C 1.38807 * 120.21224 * 0.02562 * 10 9 8 12 12 O 1.35179 * 133.65392 * 179.65751 * 11 10 9 13 13 C 1.34385 * 108.24756 * 179.89996 * 12 11 10 14 14 O 1.35178 * 124.91224 * 180.13575 * 13 12 11 15 15 N 1.30587 * 110.18262 * 0.40707 * 13 12 11 16 16 C 1.36219 * 108.67903 * 359.74779 * 15 13 12 17 17 C 1.39219 * 133.66715 * 179.97438 * 16 15 13 18 18 C 1.47025 * 108.70100 * 335.55128 * 5 4 2 19 19 C 1.54330 * 107.27030 * 1.28754 * 18 5 4 20 20 H 1.09005 * 110.71663 * 140.55687 * 19 18 5 21 21 N 1.46493 * 110.72034 * 263.82788 * 19 18 5 22 22 C 1.36938 * 120.00067 * 273.54654 * 21 19 18 23 23 H 1.08006 * 119.99935 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00383 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99486 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00278 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47252 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47478 * 120.00128 * 26 24 22 29 29 H 1.48501 * 109.47137 * 240.00049 * 26 24 22 30 30 H 1.08998 * 109.47129 * 296.11741 * 1 2 3 31 31 H 1.08996 * 109.47358 * 56.12256 * 1 2 3 32 32 H 1.09004 * 109.46468 * 176.12232 * 1 2 3 33 33 H 1.08998 * 109.47287 * 183.88308 * 3 2 1 34 34 H 1.09000 * 109.46553 * 303.88175 * 3 2 1 35 35 H 1.08995 * 109.46962 * 63.87973 * 3 2 1 36 36 H 1.09003 * 110.49522 * 160.34621 * 4 2 1 37 37 H 1.09001 * 110.34166 * 37.95074 * 4 2 1 38 38 H 1.08003 * 119.77131 * 0.02562 * 9 8 6 39 39 H 1.08003 * 119.89615 * 180.02562 * 10 9 8 40 40 H 0.96705 * 114.00122 * 270.30924 * 14 13 12 41 41 H 1.07990 * 120.26874 * 0.02923 * 17 16 15 42 42 H 1.09000 * 109.88281 * 120.70369 * 18 5 4 43 43 H 1.08996 * 109.88477 * 241.71331 * 18 5 4 44 44 H 0.96997 * 119.99987 * 93.54523 * 21 19 18 45 45 H 0.97008 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2000 5 7 2.0140 -2.2162 -0.7725 6 6 1.9473 -3.2835 -1.5928 7 8 2.0399 -3.1324 -2.7955 8 6 1.7616 -4.6366 -1.0305 9 6 1.5259 -5.7218 -1.8829 10 6 1.3523 -6.9774 -1.3737 11 6 1.4075 -7.1891 -0.0030 12 8 1.2723 -8.2839 0.7783 13 6 1.4244 -7.9079 2.0595 14 8 1.3565 -8.7395 3.1231 15 7 1.6416 -6.6221 2.1290 16 6 1.6431 -6.1111 0.8663 17 6 1.8201 -4.8314 0.3474 18 6 2.0287 -2.2643 0.6969 19 6 2.0863 -0.8073 1.2025 20 1 1.4525 -0.6783 2.0800 21 7 3.4667 -0.4148 1.4963 22 6 4.0067 -0.6792 2.7267 23 1 3.4149 -1.1775 3.4803 24 6 5.3149 -0.3078 3.0049 25 7 6.0362 0.2989 2.0863 26 14 6.0516 -0.6691 4.6830 27 1 5.0419 -1.3532 5.5300 28 1 7.2401 -1.5451 4.5237 29 1 6.4584 0.6043 5.3296 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5728 -0.8532 32 1 -0.3632 -1.0254 -0.0695 33 1 3.1629 1.4035 -0.0696 34 1 1.6697 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1253 -0.5270 -1.3986 37 1 1.4764 -0.6457 -2.0857 38 1 1.4811 -5.5652 -2.9505 39 1 1.1714 -7.8081 -2.0398 40 1 0.4669 -8.8376 3.4895 41 1 2.0016 -3.9965 1.0079 42 1 1.1220 -2.7475 1.0611 43 1 2.9050 -2.8135 1.0411 44 1 3.9983 0.0323 0.8193 45 1 6.9503 0.5589 2.2808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995926490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:59 Heat of formation + Delta-G solvation = 15.583518 kcal Electronic energy + Delta-G solvation = -30698.291427 eV Core-core repulsion = 26491.598783 eV Total energy + Delta-G solvation = -4206.692644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.51121 -40.46379 -38.71682 -38.11961 -37.19481 -34.87421 -34.12022 -33.46371 -31.11269 -30.76992 -29.63926 -28.13755 -26.81462 -26.43310 -24.65350 -23.73622 -23.27371 -22.34085 -21.54648 -20.11911 -19.59577 -18.91299 -18.25805 -17.59443 -17.25326 -16.74688 -16.42395 -15.80508 -15.33512 -15.15023 -14.90128 -14.68092 -14.28341 -14.05100 -13.80302 -13.63521 -13.37770 -13.06202 -12.82107 -12.77156 -12.51388 -12.47079 -12.15105 -11.87317 -11.79956 -11.60160 -11.52069 -11.39333 -11.00727 -10.93218 -10.76515 -10.59902 -10.32675 -10.19498 -9.89026 -9.82779 -9.68258 -9.05759 -9.00164 -8.74009 -8.33768 -7.09432 -5.86283 -3.16721 0.38087 0.58786 1.59880 2.03961 2.80028 3.08288 3.21935 3.39586 3.46565 3.47966 3.64846 4.17334 4.39895 4.50802 4.66615 4.77275 4.88416 4.96286 4.99346 5.05723 5.19698 5.31080 5.38696 5.54686 5.56338 5.67216 5.72502 5.79750 5.84710 5.88090 5.94169 6.03686 6.05679 6.14413 6.16760 6.18939 6.23268 6.31913 6.34802 6.48918 6.57060 6.69884 6.70874 6.87606 7.23692 7.63420 7.73389 8.28165 8.31609 9.43955 9.97031 10.31639 11.35639 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008566 B = 0.004026 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.819474 B = 6953.188310 C = 9225.916630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.573 3.427 7 O -0.547 6.547 8 C -0.123 4.123 9 C -0.035 4.035 10 C -0.102 4.102 11 C 0.036 3.964 12 O -0.226 6.226 13 C 0.411 3.589 14 O -0.406 6.406 15 N -0.449 5.449 16 C 0.021 3.979 17 C -0.053 4.053 18 C 0.055 3.945 19 C 0.178 3.822 20 H 0.073 0.927 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.419 0.581 41 H 0.186 0.814 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.388 0.612 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 -11.769 -4.500 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.183 4.183 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.362 3.638 7 O -0.427 6.427 8 C -0.128 4.128 9 C -0.054 4.054 10 C -0.120 4.120 11 C -0.015 4.015 12 O -0.120 6.120 13 C 0.160 3.840 14 O -0.214 6.214 15 N -0.191 5.191 16 C -0.090 4.090 17 C -0.072 4.072 18 C -0.070 4.070 19 C 0.065 3.935 20 H 0.091 0.909 21 N -0.352 5.352 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.736 3.264 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.279 0.721 41 H 0.202 0.798 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.096 -11.585 -4.466 18.785 hybrid contribution 0.193 -0.956 0.537 1.113 sum -13.904 -12.541 -3.929 19.132 Atomic orbital electron populations 1.21689 0.93865 1.01508 1.01722 1.22060 0.95343 0.96159 0.95481 1.21579 1.02143 0.93449 1.01140 1.22376 1.01372 0.79235 0.97079 1.48269 1.70516 1.06262 1.07575 1.17605 0.77370 0.83179 0.85627 1.90758 1.51981 1.85690 1.14224 1.19811 1.05634 0.94539 0.92775 1.20837 0.94015 0.89617 1.00963 1.19519 1.05155 0.98392 0.88969 1.20306 1.03630 0.83734 0.93807 1.84449 1.73456 1.35945 1.18185 1.22449 0.96989 0.85281 0.79253 1.84937 1.35898 1.63607 1.36969 1.71122 1.20614 1.04789 1.22618 1.19526 1.06425 0.95347 0.87747 1.22329 0.93203 0.96200 0.95429 1.23809 1.00749 1.03401 0.79071 1.21277 0.88890 0.88794 0.94489 0.90892 1.42470 1.08146 1.69822 1.14755 1.19268 0.95540 1.32609 0.90527 0.90846 1.24735 0.96808 1.00803 0.97895 1.69664 1.09505 1.45184 1.33131 0.86153 0.79127 0.77428 0.83678 1.20377 1.21844 1.21822 0.92201 0.92717 0.92856 0.91140 0.93543 0.92001 0.90851 0.90919 0.82799 0.83973 0.72064 0.79801 0.91588 0.89255 0.77658 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.59 37.16 0.32 -1.26 16 2 C -0.09 -1.31 0.83 -152.24 -0.13 -1.43 16 3 C -0.13 -1.88 8.22 37.16 0.31 -1.58 16 4 C 0.12 1.92 5.80 -2.41 -0.01 1.90 16 5 N -0.60 -9.66 3.31 -175.96 -0.58 -10.24 16 6 C 0.57 9.53 7.80 -12.39 -0.10 9.43 16 7 O -0.55 -10.29 16.65 5.30 0.09 -10.20 16 8 C -0.12 -1.77 5.87 -104.99 -0.62 -2.39 16 9 C -0.04 -0.42 9.52 -39.52 -0.38 -0.80 16 10 C -0.10 -1.09 9.99 -39.96 -0.40 -1.49 16 11 C 0.04 0.46 7.42 -38.53 -0.29 0.18 16 12 O -0.23 -2.77 10.78 -20.28 -0.22 -2.99 16 13 C 0.41 4.92 9.53 52.23 0.50 5.42 16 14 O -0.41 -3.39 13.62 -40.52 -0.55 -3.94 16 15 N -0.45 -6.58 11.38 -12.82 -0.15 -6.73 16 16 C 0.02 0.31 7.22 -84.71 -0.61 -0.30 16 17 C -0.05 -0.78 8.64 -38.83 -0.34 -1.11 16 18 C 0.06 0.89 4.29 -3.06 -0.01 0.88 16 19 C 0.18 3.10 2.86 -66.10 -0.19 2.91 16 20 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 21 N -0.71 -15.95 4.61 -51.65 -0.24 -16.19 16 22 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -26.72 13.06 55.49 0.72 -25.99 16 26 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 33 H 0.07 1.24 6.38 -51.93 -0.33 0.90 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 37 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 38 H 0.15 1.64 7.65 -52.48 -0.40 1.24 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.42 0.82 9.06 45.56 0.41 1.23 16 41 H 0.19 2.77 2.75 -58.22 -0.16 2.61 16 42 H 0.07 0.92 6.65 -51.93 -0.35 0.58 16 43 H 0.09 1.65 6.70 -51.93 -0.35 1.30 16 44 H 0.39 9.37 6.10 -40.82 -0.25 9.12 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -32.88 370.35 -7.30 -40.18 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.74 Total: 10.26 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.19 Total: 3.60 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.24 Total: -59.15 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.68 Total: -17.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.88 -7.30 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995926490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.761 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds