Wall clock time and date at job start Wed Apr 1 2020 03:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.88448 * 2 1 4 4 C 1.55126 * 111.19310 * 236.06849 * 2 1 3 5 5 N 1.47426 * 104.72303 * 279.18872 * 4 2 1 6 6 C 1.34776 * 125.64913 * 155.81845 * 5 4 2 7 7 O 1.21571 * 119.99684 * 5.05750 * 6 5 4 8 8 C 1.47707 * 120.00032 * 185.05966 * 6 5 4 9 9 C 1.39989 * 119.96711 * 172.05517 * 8 6 5 10 10 C 1.36596 * 120.46258 * 180.02562 * 9 8 6 11 11 C 1.38807 * 120.21224 * 0.02562 * 10 9 8 12 12 O 1.35179 * 133.65392 * 179.65751 * 11 10 9 13 13 C 1.34385 * 108.24756 * 179.89996 * 12 11 10 14 14 O 1.35178 * 124.91224 * 180.13575 * 13 12 11 15 15 N 1.30587 * 110.18262 * 0.40707 * 13 12 11 16 16 C 1.36219 * 108.67903 * 359.74779 * 15 13 12 17 17 C 1.39219 * 133.66715 * 179.97438 * 16 15 13 18 18 C 1.47025 * 108.70100 * 335.55128 * 5 4 2 19 19 C 1.54330 * 107.27030 * 1.28754 * 18 5 4 20 20 H 1.09005 * 110.71663 * 140.55687 * 19 18 5 21 21 N 1.46493 * 110.72034 * 263.82788 * 19 18 5 22 22 C 1.36938 * 120.00067 * 273.54654 * 21 19 18 23 23 H 1.08006 * 119.99935 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00383 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99486 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00278 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47252 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47478 * 120.00128 * 26 24 22 29 29 H 1.48501 * 109.47137 * 240.00049 * 26 24 22 30 30 H 1.08998 * 109.47129 * 296.11741 * 1 2 3 31 31 H 1.08996 * 109.47358 * 56.12256 * 1 2 3 32 32 H 1.09004 * 109.46468 * 176.12232 * 1 2 3 33 33 H 1.08998 * 109.47287 * 183.88308 * 3 2 1 34 34 H 1.09000 * 109.46553 * 303.88175 * 3 2 1 35 35 H 1.08995 * 109.46962 * 63.87973 * 3 2 1 36 36 H 1.09003 * 110.49522 * 160.34621 * 4 2 1 37 37 H 1.09001 * 110.34166 * 37.95074 * 4 2 1 38 38 H 1.08003 * 119.77131 * 0.02562 * 9 8 6 39 39 H 1.08003 * 119.89615 * 180.02562 * 10 9 8 40 40 H 0.96705 * 114.00122 * 270.30924 * 14 13 12 41 41 H 1.07990 * 120.26874 * 0.02923 * 17 16 15 42 42 H 1.09000 * 109.88281 * 120.70369 * 18 5 4 43 43 H 1.08996 * 109.88477 * 241.71331 * 18 5 4 44 44 H 0.96997 * 119.99987 * 93.54523 * 21 19 18 45 45 H 0.97008 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2000 5 7 2.0140 -2.2162 -0.7725 6 6 1.9473 -3.2835 -1.5928 7 8 2.0399 -3.1324 -2.7955 8 6 1.7616 -4.6366 -1.0305 9 6 1.5259 -5.7218 -1.8829 10 6 1.3523 -6.9774 -1.3737 11 6 1.4075 -7.1891 -0.0030 12 8 1.2723 -8.2839 0.7783 13 6 1.4244 -7.9079 2.0595 14 8 1.3565 -8.7395 3.1231 15 7 1.6416 -6.6221 2.1290 16 6 1.6431 -6.1111 0.8663 17 6 1.8201 -4.8314 0.3474 18 6 2.0287 -2.2643 0.6969 19 6 2.0863 -0.8073 1.2025 20 1 1.4525 -0.6783 2.0800 21 7 3.4667 -0.4148 1.4963 22 6 4.0067 -0.6792 2.7267 23 1 3.4149 -1.1775 3.4803 24 6 5.3149 -0.3078 3.0049 25 7 6.0362 0.2989 2.0863 26 14 6.0516 -0.6691 4.6830 27 1 5.0419 -1.3532 5.5300 28 1 7.2401 -1.5451 4.5237 29 1 6.4584 0.6043 5.3296 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5728 -0.8532 32 1 -0.3632 -1.0254 -0.0695 33 1 3.1629 1.4035 -0.0696 34 1 1.6697 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1253 -0.5270 -1.3986 37 1 1.4764 -0.6457 -2.0857 38 1 1.4811 -5.5652 -2.9505 39 1 1.1714 -7.8081 -2.0398 40 1 0.4669 -8.8376 3.4895 41 1 2.0016 -3.9965 1.0079 42 1 1.1220 -2.7475 1.0611 43 1 2.9050 -2.8135 1.0411 44 1 3.9983 0.0323 0.8193 45 1 6.9503 0.5589 2.2808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995926490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:58 Heat of formation + Delta-G solvation = -10.750643 kcal Electronic energy + Delta-G solvation = -30699.433362 eV Core-core repulsion = 26491.598783 eV Total energy + Delta-G solvation = -4207.834579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.46797 -41.74028 -39.80256 -39.09239 -38.27281 -35.87826 -35.75981 -34.87421 -32.67390 -32.06195 -30.65299 -29.59041 -28.03189 -27.66590 -26.09861 -25.12301 -24.25295 -23.55803 -22.77143 -21.28661 -20.45887 -20.24946 -19.31947 -19.09336 -18.53054 -17.82591 -17.60485 -17.20622 -16.57949 -16.32619 -16.15980 -15.80588 -15.73405 -15.44270 -15.13798 -14.76699 -14.68812 -14.34687 -13.98604 -13.88911 -13.67882 -13.57162 -13.28673 -13.23147 -13.10476 -12.85966 -12.76734 -12.71401 -12.53830 -12.42466 -12.13319 -12.02003 -11.85721 -11.55936 -11.45453 -11.29174 -11.16319 -10.83837 -10.09634 -9.76626 -9.62283 -8.99914 -7.92572 -5.20295 -0.55484 -0.46150 0.73246 1.10280 1.47987 1.50197 1.58292 1.62051 1.87848 2.25644 2.54478 2.57486 3.19782 3.24393 3.38630 3.57908 3.75262 3.78255 3.85835 3.91478 4.00152 4.05268 4.07572 4.28639 4.42014 4.48050 4.57306 4.60675 4.74495 4.75965 4.85298 4.87103 4.92143 4.96571 4.98263 5.05541 5.10751 5.12671 5.24478 5.30879 5.34467 5.42294 5.56162 5.62277 6.16895 6.29152 6.29781 6.42127 6.97568 7.37490 8.10838 8.33614 9.30710 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008566 B = 0.004026 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.819474 B = 6953.188310 C = 9225.916630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.120 4.120 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.570 3.430 7 O -0.572 6.572 8 C -0.132 4.132 9 C -0.036 4.036 10 C -0.080 4.080 11 C 0.031 3.969 12 O -0.223 6.223 13 C 0.430 3.570 14 O -0.403 6.403 15 N -0.489 5.489 16 C 0.003 3.997 17 C -0.065 4.065 18 C 0.070 3.930 19 C 0.168 3.832 20 H 0.082 0.918 21 N -0.722 5.722 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.069 4.069 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.264 1.264 28 H -0.302 1.302 29 H -0.295 1.295 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.447 0.553 41 H 0.174 0.826 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.376 0.624 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.365 -13.698 -4.522 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.178 4.178 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.361 3.639 7 O -0.454 6.454 8 C -0.136 4.136 9 C -0.055 4.055 10 C -0.099 4.099 11 C -0.020 4.020 12 O -0.117 6.117 13 C 0.179 3.821 14 O -0.215 6.215 15 N -0.233 5.233 16 C -0.108 4.108 17 C -0.084 4.084 18 C -0.055 4.055 19 C 0.058 3.942 20 H 0.100 0.900 21 N -0.361 5.361 22 C -0.365 4.365 23 H 0.099 0.901 24 C -0.261 4.261 25 N -0.617 5.617 26 Si 0.792 3.208 27 H -0.188 1.188 28 H -0.230 1.230 29 H -0.223 1.223 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.186 0.814 39 H 0.199 0.801 40 H 0.313 0.687 41 H 0.190 0.810 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.210 0.790 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.666 -13.544 -4.454 21.933 hybrid contribution 0.872 -0.494 0.566 1.151 sum -15.794 -14.039 -3.887 21.486 Atomic orbital electron populations 1.21654 0.91039 1.02228 1.03173 1.22013 0.97269 0.95208 0.93194 1.21513 1.00135 0.94017 1.02119 1.22373 1.00277 0.79369 0.98132 1.48329 1.70348 1.06500 1.07536 1.17979 0.76637 0.83946 0.85334 1.90733 1.53289 1.86186 1.15189 1.19730 1.06868 0.94006 0.93039 1.21015 0.93758 0.89345 1.01347 1.19880 1.02553 0.98880 0.88548 1.20573 1.03620 0.83375 0.94429 1.84473 1.73397 1.35548 1.18249 1.22574 0.94615 0.85070 0.79834 1.84916 1.38473 1.62519 1.35638 1.71092 1.22914 1.06211 1.23046 1.19616 1.07014 0.95759 0.88390 1.22114 0.94586 0.96278 0.95380 1.23551 1.00932 1.01907 0.79110 1.21553 0.86564 0.89998 0.96136 0.90032 1.42606 1.10039 1.69891 1.13591 1.19643 0.95321 1.30076 0.91487 0.90087 1.25407 0.97729 1.02209 1.00780 1.69809 1.09406 1.47652 1.34858 0.85243 0.78157 0.76760 0.80656 1.18834 1.22993 1.22257 0.91094 0.90903 0.92561 0.94347 0.90876 0.92348 0.93366 0.89676 0.81371 0.80112 0.68676 0.80989 0.88931 0.91856 0.78966 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.59 71.98 0.62 -2.06 16 2 C -0.08 -2.16 0.83 -50.71 -0.04 -2.20 16 3 C -0.12 -3.57 8.22 71.98 0.59 -2.98 16 4 C 0.12 3.81 5.80 86.93 0.50 4.32 16 5 N -0.60 -19.38 3.31 -828.88 -2.74 -22.13 16 6 C 0.57 18.88 7.80 86.75 0.68 19.55 16 7 O -0.57 -21.39 16.65 -3.94 -0.07 -21.46 16 8 C -0.13 -3.72 5.87 -20.10 -0.12 -3.84 16 9 C -0.04 -0.79 9.52 22.31 0.21 -0.57 16 10 C -0.08 -1.49 9.99 22.02 0.22 -1.27 16 11 C 0.03 0.73 7.42 22.95 0.17 0.90 16 12 O -0.22 -4.90 10.78 10.13 0.11 -4.79 16 13 C 0.43 9.46 9.53 130.43 1.24 10.71 16 14 O -0.40 -5.67 13.62 -62.30 -0.85 -6.51 16 15 N -0.49 -13.90 11.38 -422.85 -4.81 -18.71 16 16 C 0.00 0.10 7.22 39.24 0.28 0.38 16 17 C -0.07 -1.89 8.64 22.76 0.20 -1.69 16 18 C 0.07 2.26 4.29 86.73 0.37 2.63 16 19 C 0.17 5.82 2.86 46.18 0.13 5.95 16 20 H 0.08 2.71 8.03 -2.38 -0.02 2.69 16 21 N -0.72 -33.14 4.61 -317.32 -1.46 -34.61 16 22 C -0.23 -12.08 9.98 84.03 0.84 -11.25 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 25 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 26 Si 0.96 45.42 29.55 68.60 2.03 47.45 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 29 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.21 7.91 -2.38 -0.02 1.19 16 33 H 0.04 1.39 6.38 -2.39 -0.02 1.37 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 37 H 0.08 2.48 8.01 -2.39 -0.02 2.46 16 38 H 0.17 3.20 7.65 -2.91 -0.02 3.18 16 39 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.45 0.38 9.06 -74.05 -0.67 -0.29 16 41 H 0.17 5.28 2.75 -8.29 -0.02 5.26 16 42 H 0.09 2.52 6.65 -2.39 -0.02 2.51 16 43 H 0.06 2.42 6.70 -2.39 -0.02 2.40 16 44 H 0.38 19.01 6.10 -92.71 -0.57 18.45 16 45 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -72.97 370.35 -1.33 -74.29 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.18 Total: 28.65 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.37 Total: 15.26 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -8.74 Total: -132.90 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.81 Total: -32.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.97 -1.33 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995926490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.543 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds