Wall clock time and date at job start Wed Apr 1 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.88604 * 2 1 4 4 C 1.55123 * 111.19264 * 236.06435 * 2 1 3 5 5 N 1.47421 * 104.72485 * 279.19146 * 4 2 1 6 6 C 1.34783 * 125.64920 * 155.81913 * 5 4 2 7 7 O 1.21576 * 119.99808 * 5.03697 * 6 5 4 8 8 C 1.47707 * 119.99882 * 185.03747 * 6 5 4 9 9 C 1.39999 * 119.96186 * 172.05560 * 8 6 5 10 10 C 1.36602 * 120.45731 * 179.97438 * 9 8 6 11 11 C 1.38800 * 120.21307 * 0.03916 * 10 9 8 12 12 O 1.35176 * 133.65237 * 179.97438 * 11 10 9 13 13 C 1.34390 * 108.24718 * 179.97438 * 12 11 10 14 14 O 1.35180 * 124.91069 * 179.97438 * 13 12 11 15 15 N 1.30590 * 110.18198 * 0.26675 * 13 12 11 16 16 C 1.36216 * 108.67548 * 359.57276 * 15 13 12 17 17 C 1.39220 * 133.66209 * 180.09521 * 16 15 13 18 18 C 1.47018 * 108.70463 * 335.55631 * 5 4 2 19 19 C 1.54327 * 107.27113 * 1.28320 * 18 5 4 20 20 H 1.08994 * 110.72201 * 263.83394 * 19 18 5 21 21 N 1.46494 * 110.72030 * 140.55570 * 19 18 5 22 22 C 1.36937 * 120.00200 * 86.45793 * 21 19 18 23 23 H 1.08000 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00278 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00282 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00060 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47051 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47127 * 120.00017 * 26 24 22 29 29 H 1.48497 * 109.46853 * 240.00113 * 26 24 22 30 30 H 1.09000 * 109.47212 * 296.12025 * 1 2 3 31 31 H 1.09001 * 109.47161 * 56.12055 * 1 2 3 32 32 H 1.09003 * 109.46886 * 176.11834 * 1 2 3 33 33 H 1.09003 * 109.47009 * 183.87909 * 3 2 1 34 34 H 1.09003 * 109.47252 * 303.87699 * 3 2 1 35 35 H 1.08998 * 109.46940 * 63.87807 * 3 2 1 36 36 H 1.09003 * 110.49503 * 160.35105 * 4 2 1 37 37 H 1.09004 * 110.34951 * 37.96118 * 4 2 1 38 38 H 1.07997 * 119.77000 * 359.97438 * 9 8 6 39 39 H 1.08007 * 119.89180 * 179.97438 * 10 9 8 40 40 H 0.96703 * 113.99697 * 0.02762 * 14 13 12 41 41 H 1.07994 * 120.26853 * 0.36946 * 17 16 15 42 42 H 1.09001 * 109.88714 * 120.70229 * 18 5 4 43 43 H 1.09005 * 109.88090 * 241.87027 * 18 5 4 44 44 H 0.97001 * 120.00406 * 266.45396 * 21 19 18 45 45 H 0.97001 * 120.00253 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2835 -1.5927 7 8 2.0394 -3.1325 -2.7955 8 6 1.7619 -4.6367 -1.0303 9 6 1.5263 -5.7220 -1.8827 10 6 1.3540 -6.9778 -1.3736 11 6 1.4105 -7.1896 -0.0030 12 8 1.2821 -8.2855 0.7779 13 6 1.4301 -7.9087 2.0594 14 8 1.3637 -8.7405 3.1229 15 7 1.6411 -6.6219 2.1292 16 6 1.6464 -6.1116 0.8662 17 6 1.8222 -4.8317 0.3474 18 6 2.0285 -2.2644 0.6969 19 6 2.0861 -0.8075 1.2026 20 1 3.1132 -0.5155 1.4212 21 7 1.2342 -0.6340 2.3817 22 6 1.7295 -0.9028 3.6298 23 1 2.7480 -1.2430 3.7448 24 6 0.9225 -0.7379 4.7471 25 7 -0.3189 -0.3237 4.6069 26 14 1.5979 -1.1052 6.4496 27 1 3.0089 -1.5541 6.3360 28 1 1.5340 0.1222 7.2829 29 1 0.7876 -2.1764 7.0830 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4034 -0.0695 34 1 1.6698 1.9732 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1253 -0.5272 -1.3985 37 1 1.4765 -0.6458 -2.0858 38 1 1.4803 -5.5652 -2.9503 39 1 1.1723 -7.8084 -2.0396 40 1 1.1960 -9.6640 2.8901 41 1 2.0043 -3.9969 1.0078 42 1 1.1218 -2.7476 1.0611 43 1 2.9063 -2.8112 1.0412 44 1 0.3193 -0.3287 2.2785 45 1 -0.8830 -0.2088 5.3877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995926491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:03 Heat of formation + Delta-G solvation = -12.995041 kcal Electronic energy + Delta-G solvation = -30747.202526 eV Core-core repulsion = 26539.270623 eV Total energy + Delta-G solvation = -4207.931903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.48172 -41.73058 -39.83249 -39.21260 -38.24576 -35.96383 -35.84368 -34.84463 -32.75961 -31.99498 -30.65368 -29.33103 -28.27984 -27.63887 -26.11042 -25.21446 -24.39411 -23.44192 -22.69866 -21.43907 -20.47812 -20.08579 -19.29749 -19.13739 -18.41254 -17.85091 -17.47772 -17.23295 -16.54542 -16.44905 -16.16305 -15.73961 -15.57940 -15.42866 -15.06221 -14.88893 -14.78252 -14.67010 -14.24570 -14.01583 -13.82553 -13.58400 -13.50020 -13.37739 -13.01842 -12.87466 -12.78196 -12.70386 -12.35409 -12.22614 -12.08097 -12.03463 -11.83266 -11.55884 -11.45408 -11.31915 -11.16303 -10.81286 -10.05016 -9.72846 -9.45841 -9.01463 -7.93033 -5.21055 -0.46508 -0.36618 0.74625 1.23747 1.48077 1.50831 1.58477 1.65241 1.84413 2.01126 2.56684 2.59679 3.21253 3.24633 3.38513 3.57401 3.76464 3.79837 3.80968 3.88390 4.00883 4.07820 4.18332 4.23807 4.37754 4.41941 4.47991 4.66125 4.75133 4.80164 4.81932 4.88448 4.94270 4.97519 5.02594 5.05653 5.10125 5.16138 5.22278 5.28412 5.35976 5.45655 5.53864 5.57552 5.78616 6.29031 6.38317 6.65377 6.97725 7.38145 8.10197 8.34025 9.30176 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.004622 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.158828 B = 6056.653490 C = 9233.632584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.575 3.425 7 O -0.565 6.565 8 C -0.131 4.131 9 C -0.044 4.044 10 C -0.074 4.074 11 C 0.018 3.982 12 O -0.230 6.230 13 C 0.450 3.550 14 O -0.382 6.382 15 N -0.520 5.520 16 C 0.016 3.984 17 C -0.079 4.079 18 C 0.075 3.925 19 C 0.171 3.829 20 H 0.072 0.928 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.078 0.922 24 C -0.066 4.066 25 N -0.965 5.965 26 Si 0.961 3.039 27 H -0.267 1.267 28 H -0.293 1.293 29 H -0.300 1.300 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.452 0.548 41 H 0.168 0.832 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.382 0.618 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -13.741 -13.745 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C -0.182 4.182 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.365 3.635 7 O -0.447 6.447 8 C -0.135 4.135 9 C -0.063 4.063 10 C -0.092 4.092 11 C -0.032 4.032 12 O -0.127 6.127 13 C 0.200 3.800 14 O -0.187 6.187 15 N -0.267 5.267 16 C -0.094 4.094 17 C -0.097 4.097 18 C -0.050 4.050 19 C 0.060 3.940 20 H 0.089 0.911 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.096 0.904 24 C -0.258 4.258 25 N -0.616 5.616 26 Si 0.791 3.209 27 H -0.191 1.191 28 H -0.221 1.221 29 H -0.228 1.228 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.189 0.811 39 H 0.201 0.799 40 H 0.315 0.685 41 H 0.184 0.816 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.217 0.783 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.453 -13.055 -13.306 19.165 hybrid contribution -0.547 -1.213 1.078 1.713 sum 3.906 -14.268 -12.228 19.192 Atomic orbital electron populations 1.21587 0.94033 1.01042 1.01796 1.21976 0.96041 0.96331 0.93494 1.21614 1.01264 0.93101 1.02181 1.22484 1.01966 0.78397 0.97216 1.48358 1.70793 1.06936 1.07167 1.17877 0.76520 0.83783 0.85286 1.90732 1.53035 1.86179 1.14718 1.19760 1.06685 0.94362 0.92675 1.21005 0.94703 0.89281 1.01328 1.19885 1.02052 0.98986 0.88267 1.20475 1.05049 0.83366 0.94334 1.84463 1.75350 1.35441 1.17397 1.23080 0.91549 0.87528 0.77842 1.85243 1.87766 1.25725 1.19989 1.70908 1.27977 1.04780 1.23050 1.19683 1.05942 0.96028 0.87754 1.22088 0.96009 0.96086 0.95559 1.23460 1.00804 1.02001 0.78770 1.21481 0.95187 0.90617 0.86716 0.91058 1.42651 1.13366 1.79158 1.00925 1.19629 0.96795 1.35627 0.84798 0.90450 1.25388 0.96391 1.03030 1.01040 1.69791 1.07766 1.54677 1.29337 0.85256 0.77944 0.76639 0.81060 1.19109 1.22059 1.22783 0.93323 0.90616 0.94267 0.91281 0.90584 0.93456 0.89505 0.89820 0.81113 0.79925 0.68504 0.81578 0.91702 0.90813 0.78255 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.94 71.98 0.57 -3.43 16 2 C -0.08 -2.27 0.87 -50.71 -0.04 -2.31 16 3 C -0.12 -3.16 8.68 71.98 0.62 -2.54 16 4 C 0.12 3.28 5.83 86.93 0.51 3.79 16 5 N -0.60 -18.54 3.31 -828.75 -2.74 -21.28 16 6 C 0.57 18.14 7.80 86.74 0.68 18.82 16 7 O -0.57 -19.48 16.65 -3.95 -0.07 -19.54 16 8 C -0.13 -3.75 5.87 -20.10 -0.12 -3.87 16 9 C -0.04 -0.97 9.52 22.31 0.21 -0.76 16 10 C -0.07 -1.38 9.99 22.02 0.22 -1.16 16 11 C 0.02 0.45 7.42 22.95 0.17 0.62 16 12 O -0.23 -4.93 10.78 10.12 0.11 -4.82 16 13 C 0.45 10.95 9.53 130.43 1.24 12.20 16 14 O -0.38 -6.00 13.62 -62.33 -0.85 -6.84 16 15 N -0.52 -17.57 11.38 -422.84 -4.81 -22.38 16 16 C 0.02 0.51 7.22 39.24 0.28 0.80 16 17 C -0.08 -2.51 8.64 22.75 0.20 -2.31 16 18 C 0.08 2.57 4.30 86.73 0.37 2.94 16 19 C 0.17 6.18 2.85 46.18 0.13 6.31 16 20 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 21 N -0.72 -33.64 5.08 -317.34 -1.61 -35.25 16 22 C -0.24 -12.49 9.98 84.03 0.84 -11.66 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 25 N -0.97 -57.70 13.06 21.65 0.28 -57.41 16 26 Si 0.96 46.00 29.55 68.60 2.03 48.02 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 30 H 0.05 1.79 6.34 -2.39 -0.02 1.77 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.32 7.91 -2.39 -0.02 1.31 16 33 H 0.07 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 37 H 0.08 2.19 8.01 -2.38 -0.02 2.17 16 38 H 0.17 3.13 7.65 -2.91 -0.02 3.11 16 39 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.45 0.17 9.06 -74.06 -0.67 -0.50 16 41 H 0.17 5.80 2.76 -8.24 -0.02 5.78 16 42 H 0.06 2.54 6.54 -2.39 -0.02 2.52 16 43 H 0.07 2.47 6.80 -2.38 -0.02 2.45 16 44 H 0.38 19.18 5.26 -92.71 -0.49 18.70 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -74.58 369.73 -1.41 -75.99 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.10 Total: 29.31 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.35 Total: 14.21 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -8.88 Total: -136.32 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.81 Total: -31.21 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.58 -1.41 -75.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995926491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.991 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds