Wall clock time and date at job start Wed Apr 1 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88926 * 2 1 4 4 C 1.55133 * 111.19576 * 236.06474 * 2 1 3 5 5 N 1.47421 * 104.71911 * 279.19235 * 4 2 1 6 6 C 1.34783 * 125.64488 * 155.81588 * 5 4 2 7 7 O 1.21622 * 119.99893 * 4.54734 * 6 5 4 8 8 C 1.47330 * 119.99942 * 184.54881 * 6 5 4 9 9 C 1.39496 * 120.30491 * 313.37705 * 8 6 5 10 10 C 1.38052 * 120.21680 * 179.66655 * 9 8 6 11 11 C 1.38368 * 120.67305 * 0.61436 * 10 9 8 12 12 C 1.38401 * 120.25063 * 359.40773 * 11 10 9 13 13 O 1.35317 * 133.75832 * 180.30248 * 12 11 10 14 14 C 1.34328 * 108.10573 * 179.97438 * 13 12 11 15 15 O 1.35094 * 124.96053 * 179.97438 * 14 13 12 16 16 N 1.30853 * 110.08153 * 0.02562 * 14 13 12 17 17 C 1.35547 * 108.78129 * 359.97438 * 16 14 13 18 18 C 1.47013 * 108.70751 * 335.55263 * 5 4 2 19 19 C 1.54322 * 107.27427 * 1.28511 * 18 5 4 20 20 H 1.08996 * 110.72370 * 263.83622 * 19 18 5 21 21 N 1.46496 * 110.72140 * 140.55426 * 19 18 5 22 22 C 1.36938 * 120.00035 * 86.46281 * 21 19 18 23 23 H 1.08010 * 119.99883 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00245 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00118 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99948 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47246 * 89.99548 * 26 24 22 28 28 H 1.48497 * 109.46879 * 209.99817 * 26 24 22 29 29 H 1.48499 * 109.47008 * 329.99288 * 26 24 22 30 30 H 1.09000 * 109.47232 * 296.11904 * 1 2 3 31 31 H 1.09001 * 109.46757 * 56.12183 * 1 2 3 32 32 H 1.09003 * 109.47070 * 176.11838 * 1 2 3 33 33 H 1.08995 * 109.47596 * 183.87742 * 3 2 1 34 34 H 1.09005 * 109.46726 * 303.88292 * 3 2 1 35 35 H 1.08997 * 109.47211 * 63.87571 * 3 2 1 36 36 H 1.08993 * 110.49685 * 160.34962 * 4 2 1 37 37 H 1.09004 * 110.33797 * 37.95664 * 4 2 1 38 38 H 1.07997 * 119.89487 * 0.02562 * 9 8 6 39 39 H 1.08001 * 119.66562 * 180.29694 * 10 9 8 40 40 H 1.08006 * 119.87409 * 179.68005 * 11 10 9 41 41 H 0.96698 * 114.00237 * 270.00550 * 15 14 13 42 42 H 1.09000 * 109.88930 * 120.70876 * 18 5 4 43 43 H 1.09011 * 109.88536 * 241.71751 * 18 5 4 44 44 H 0.96999 * 120.00317 * 266.45812 * 21 19 18 45 45 H 0.97000 * 120.00409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0140 -2.2162 -0.7723 6 6 1.9472 -3.2835 -1.5926 7 8 2.0306 -3.1315 -2.7964 8 6 1.7732 -4.6344 -1.0310 9 6 2.5501 -5.0531 0.0492 10 6 2.3808 -6.3169 0.5784 11 6 1.4509 -7.1887 0.0402 12 6 0.6677 -6.7981 -1.0320 13 8 -0.3032 -7.4059 -1.7523 14 6 -0.7262 -6.5451 -2.6928 15 8 -1.6914 -6.8044 -3.6017 16 7 -0.0660 -5.4190 -2.6007 17 6 0.8207 -5.5152 -1.5800 18 6 2.0285 -2.2643 0.6969 19 6 2.0862 -0.8075 1.2026 20 1 3.1133 -0.5154 1.4212 21 7 1.2342 -0.6340 2.3817 22 6 1.7295 -0.9027 3.6298 23 1 2.7482 -1.2429 3.7449 24 6 0.9222 -0.7388 4.7470 25 7 -0.3192 -0.3247 4.6069 26 14 1.5977 -1.1061 6.4495 27 1 2.2065 0.1239 7.0164 28 1 0.4944 -1.5642 7.3315 29 1 2.6291 -2.1702 6.3538 30 1 -0.3634 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4034 -0.0695 34 1 1.6698 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1253 -0.5272 -1.3985 37 1 1.4765 -0.6457 -2.0858 38 1 3.2825 -4.3844 0.4767 39 1 2.9838 -6.6301 1.4179 40 1 1.3327 -8.1764 0.4611 41 1 -1.3629 -7.1908 -4.4250 42 1 1.1219 -2.7475 1.0611 43 1 2.9049 -2.8136 1.0413 44 1 0.3193 -0.3287 2.2784 45 1 -0.8833 -0.2099 5.3876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996060414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:18 Heat of formation + Delta-G solvation = -29.596798 kcal Electronic energy + Delta-G solvation = -30786.316727 eV Core-core repulsion = 26577.664917 eV Total energy + Delta-G solvation = -4208.651810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.46453 -41.51737 -39.73492 -39.09835 -38.31230 -35.94499 -35.76504 -34.65339 -32.66228 -32.07306 -30.54875 -29.16602 -28.32364 -27.62986 -25.87916 -25.12211 -24.18961 -23.91302 -22.71059 -20.73828 -20.52858 -20.11099 -19.36400 -19.10057 -18.46406 -18.16685 -17.58518 -17.08772 -16.62324 -16.43544 -16.22397 -15.73144 -15.65417 -15.39591 -15.16400 -14.82656 -14.61898 -14.27210 -13.90104 -13.86747 -13.76714 -13.54854 -13.36734 -13.05536 -12.95341 -12.84039 -12.81497 -12.74140 -12.55912 -12.50855 -12.09231 -12.05224 -11.87840 -11.79885 -11.46939 -11.29257 -11.06526 -10.85316 -10.02846 -9.72836 -9.54031 -8.99472 -7.88362 -5.17554 -0.77777 -0.05502 0.73116 1.10133 1.51669 1.54462 1.55021 1.63102 1.88903 2.28514 2.50354 2.62179 3.13451 3.42526 3.46667 3.61760 3.71054 3.80342 3.85131 3.92200 4.00639 4.15370 4.21770 4.31289 4.40806 4.44963 4.55364 4.58602 4.70094 4.78280 4.83231 4.85424 4.90083 5.01464 5.06815 5.09015 5.13309 5.17666 5.23821 5.28576 5.41963 5.47521 5.52433 5.61252 6.12989 6.30323 6.32074 6.41756 6.99854 7.40781 8.13482 8.37391 9.35029 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.003573 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.017236 B = 7834.661403 C = 9185.897623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.123 4.123 4 C 0.121 3.879 5 N -0.603 5.603 6 C 0.572 3.428 7 O -0.569 6.569 8 C -0.100 4.100 9 C -0.075 4.075 10 C -0.082 4.082 11 C -0.057 4.057 12 C -0.003 4.003 13 O -0.222 6.222 14 C 0.430 3.570 15 O -0.403 6.403 16 N -0.499 5.499 17 C 0.043 3.957 18 C 0.083 3.917 19 C 0.175 3.825 20 H 0.078 0.922 21 N -0.723 5.723 22 C -0.236 4.236 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.970 5.970 26 Si 0.967 3.033 27 H -0.292 1.292 28 H -0.304 1.304 29 H -0.262 1.262 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.162 0.838 39 H 0.195 0.805 40 H 0.180 0.820 41 H 0.446 0.554 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.379 0.621 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -13.117 -11.919 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.001 4.001 5 N -0.335 5.335 6 C 0.361 3.639 7 O -0.449 6.449 8 C -0.104 4.104 9 C -0.094 4.094 10 C -0.100 4.100 11 C -0.075 4.075 12 C -0.053 4.053 13 O -0.117 6.117 14 C 0.180 3.820 15 O -0.215 6.215 16 N -0.243 5.243 17 C -0.071 4.071 18 C -0.042 4.042 19 C 0.064 3.936 20 H 0.096 0.904 21 N -0.363 5.363 22 C -0.368 4.368 23 H 0.104 0.896 24 C -0.263 4.263 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.219 1.219 28 H -0.231 1.231 29 H -0.187 1.187 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.179 0.821 39 H 0.212 0.788 40 H 0.197 0.803 41 H 0.313 0.687 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.214 0.786 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.105 -12.474 -12.486 18.676 hybrid contribution -0.622 -0.719 0.668 1.162 sum 5.483 -13.193 -11.819 18.542 Atomic orbital electron populations 1.21561 0.94604 1.00543 1.01590 1.21984 0.95615 0.96512 0.93919 1.21605 1.01412 0.92981 1.02058 1.22439 1.01727 0.78976 0.96997 1.48399 1.71050 1.06241 1.07793 1.17935 0.76328 0.84269 0.85330 1.90753 1.52115 1.86388 1.15620 1.19100 0.99013 0.93233 0.99062 1.21772 0.97712 0.98174 0.91732 1.21526 0.97168 0.91237 1.00031 1.20603 0.92928 1.02974 0.91012 1.20330 0.93450 0.92381 0.99098 1.84488 1.45115 1.41983 1.40072 1.22657 0.88586 0.82617 0.88135 1.84867 1.25124 1.83545 1.27977 1.71002 1.09651 1.22840 1.20771 1.19433 0.97853 0.94822 0.94951 1.23229 1.01482 1.01956 0.77526 1.21417 0.95224 0.90687 0.86251 0.90433 1.42695 1.13269 1.79256 1.01126 1.19684 0.96963 1.35633 0.84507 0.89647 1.25482 0.96314 1.03155 1.01373 1.69815 1.08025 1.54843 1.29424 0.85231 0.76904 0.77879 0.80294 1.21922 1.23135 1.18665 0.93033 0.91286 0.94931 0.90912 0.91109 0.93246 0.89252 0.91364 0.82066 0.78813 0.80270 0.68747 0.93250 0.89625 0.78598 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.94 71.98 0.57 -3.71 16 2 C -0.08 -2.43 0.87 -50.71 -0.04 -2.47 16 3 C -0.12 -3.24 8.68 71.98 0.62 -2.61 16 4 C 0.12 3.59 5.83 86.93 0.51 4.09 16 5 N -0.60 -19.72 3.31 -815.33 -2.70 -22.42 16 6 C 0.57 20.71 7.40 86.63 0.64 21.35 16 7 O -0.57 -24.17 17.30 -4.10 -0.07 -24.24 16 8 C -0.10 -3.16 5.45 -19.94 -0.11 -3.26 16 9 C -0.07 -1.70 8.51 22.53 0.19 -1.51 16 10 C -0.08 -1.32 10.01 22.26 0.22 -1.10 16 11 C -0.06 -1.00 10.04 22.34 0.22 -0.77 16 12 C 0.00 -0.08 7.41 22.82 0.17 0.09 16 13 O -0.22 -5.62 10.79 9.24 0.10 -5.52 16 14 C 0.43 11.31 9.54 130.39 1.24 12.56 16 15 O -0.40 -7.16 13.62 -61.41 -0.84 -7.99 16 16 N -0.50 -17.11 11.36 -421.87 -4.79 -21.90 16 17 C 0.04 1.40 6.90 39.73 0.27 1.68 16 18 C 0.08 2.72 5.05 86.73 0.44 3.16 16 19 C 0.17 6.13 2.85 46.18 0.13 6.26 16 20 H 0.08 2.59 8.02 -2.39 -0.02 2.57 16 21 N -0.72 -32.84 5.08 -317.32 -1.61 -34.45 16 22 C -0.24 -11.79 9.98 84.03 0.84 -10.96 16 23 H 0.09 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 25 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 26 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 30 H 0.05 1.98 6.34 -2.39 -0.02 1.97 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 33 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 37 H 0.07 2.13 8.00 -2.38 -0.02 2.11 16 38 H 0.16 3.13 5.84 -2.91 -0.02 3.11 16 39 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.45 2.00 9.06 -74.06 -0.67 1.33 16 42 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 43 H 0.09 2.36 5.94 -2.38 -0.01 2.34 16 44 H 0.38 18.97 5.26 -92.71 -0.49 18.48 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -78.20 374.49 -1.30 -79.50 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.10 Total: 28.87 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.39 Total: 19.47 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -8.82 Total: -135.30 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.81 Total: -37.75 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -78.20 -1.30 -79.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996060414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.907 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds