Wall clock time and date at job start Wed Apr 1 2020 03:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 110.88592 * 2 1 4 4 C 1.55129 * 111.19327 * 236.06765 * 2 1 3 5 5 N 1.47426 * 104.71948 * 279.18994 * 4 2 1 6 6 C 1.34777 * 125.64308 * 155.82098 * 5 4 2 7 7 O 1.21493 * 120.00329 * 359.71510 * 6 5 4 8 8 C 1.48351 * 119.99570 * 179.44061 * 6 5 4 9 9 C 1.41717 * 126.80762 * 179.97438 * 8 6 5 10 10 C 1.37161 * 103.79126 * 179.89244 * 9 8 6 11 11 C 1.47006 * 126.85342 * 180.11610 * 10 9 8 12 12 C 1.36345 * 125.96137 * 180.26954 * 11 10 9 13 13 C 1.40701 * 106.71792 * 180.02562 * 12 11 10 14 14 C 1.34889 * 107.08298 * 0.02562 * 13 12 11 15 15 O 1.34218 * 108.73101 * 359.73132 * 14 13 12 16 16 O 1.34580 * 106.28486 * 0.36549 * 10 9 8 17 17 N 1.20874 * 111.68800 * 359.74917 * 16 10 9 18 18 C 1.47017 * 108.70292 * 335.55402 * 5 4 2 19 19 C 1.54316 * 107.27711 * 1.28432 * 18 5 4 20 20 H 1.09003 * 110.72117 * 140.55346 * 19 18 5 21 21 N 1.46499 * 110.72565 * 263.65588 * 19 18 5 22 22 C 1.36936 * 119.99890 * 273.54585 * 21 19 18 23 23 H 1.08006 * 120.00156 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00102 * 179.97438 * 22 21 19 25 25 N 1.31626 * 119.99828 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00050 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47091 * 89.99719 * 26 24 22 28 28 H 1.48500 * 109.47154 * 210.00001 * 26 24 22 29 29 H 1.48504 * 109.47009 * 330.00272 * 26 24 22 30 30 H 1.08999 * 109.47160 * 296.12374 * 1 2 3 31 31 H 1.08997 * 109.46855 * 56.11928 * 1 2 3 32 32 H 1.08997 * 109.47343 * 176.12137 * 1 2 3 33 33 H 1.08999 * 109.47079 * 183.87612 * 3 2 1 34 34 H 1.08993 * 109.46914 * 303.88282 * 3 2 1 35 35 H 1.08999 * 109.46695 * 63.87850 * 3 2 1 36 36 H 1.08999 * 110.49618 * 160.35079 * 4 2 1 37 37 H 1.08994 * 110.34436 * 37.95687 * 4 2 1 38 38 H 1.07996 * 128.10451 * 359.97438 * 9 8 6 39 39 H 1.08004 * 126.64395 * 0.02755 * 12 11 10 40 40 H 1.08008 * 126.45898 * 180.02562 * 13 12 11 41 41 H 1.07997 * 125.63440 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.88390 * 120.70929 * 18 5 4 43 43 H 1.09009 * 109.88166 * 241.71319 * 18 5 4 44 44 H 0.96996 * 120.00279 * 93.54184 * 21 19 18 45 45 H 0.96997 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2834 -1.5927 7 8 1.9421 -3.1245 -2.7972 8 6 1.8861 -4.6526 -1.0249 9 6 1.8128 -5.8692 -1.7481 10 6 1.7815 -6.8298 -0.7695 11 6 1.7077 -8.2850 -0.9646 12 6 1.6723 -9.2245 0.0229 13 6 1.6042 -10.4777 -0.6129 14 6 1.6017 -10.2481 -1.9421 15 8 1.6586 -8.9234 -2.1508 16 8 1.8262 -6.1740 0.4047 17 7 1.8836 -4.9771 0.2460 18 6 2.0285 -2.2643 0.6969 19 6 2.0862 -0.8075 1.2026 20 1 1.4523 -0.6784 2.0800 21 7 3.4662 -0.4163 1.5004 22 6 4.0022 -0.6812 2.7324 23 1 3.4075 -1.1781 3.4846 24 6 5.3100 -0.3110 3.0144 25 7 5.8250 -0.5652 4.1988 26 14 6.3389 0.5478 1.7133 27 1 6.1602 2.0173 1.8312 28 1 7.7707 0.2059 1.9092 29 1 5.9037 0.1029 0.3649 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0695 34 1 1.6697 1.9732 -0.8531 35 1 1.7822 1.9302 0.9227 36 1 3.1253 -0.5271 -1.3985 37 1 1.4765 -0.6457 -2.0858 38 1 1.7887 -6.0076 -2.8189 39 1 1.6927 -9.0420 1.0872 40 1 1.5618 -11.4420 -0.1281 41 1 1.5561 -11.0048 -2.7113 42 1 1.1218 -2.7475 1.0610 43 1 2.9049 -2.8135 1.0411 44 1 4.0002 0.0303 0.8250 45 1 6.7387 -0.3062 4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996112290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:40 Heat of formation + Delta-G solvation = 77.039207 kcal Electronic energy + Delta-G solvation = -30193.345874 eV Core-core repulsion = 25989.318149 eV Total energy + Delta-G solvation = -4204.027725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.20966 -42.93493 -40.15424 -38.12408 -34.35130 -34.11240 -33.71370 -33.36755 -32.69250 -31.11787 -29.10892 -28.33914 -27.13028 -26.87459 -24.44801 -23.66866 -23.49780 -22.16574 -21.72570 -21.22262 -19.61136 -19.15978 -18.22186 -18.04278 -17.63708 -17.04567 -16.58603 -16.40384 -15.88977 -15.43760 -15.03896 -14.75635 -14.45647 -14.15759 -13.87734 -13.75750 -13.34483 -13.16178 -13.07588 -12.83015 -12.77402 -12.54014 -12.31952 -12.14674 -11.91392 -11.75554 -11.67453 -11.28612 -11.02776 -10.83810 -10.69764 -10.64775 -10.56463 -10.33787 -10.27476 -10.20233 -9.94485 -9.62403 -9.04751 -8.52865 -8.46527 -7.38801 -5.84260 -3.21370 0.37548 1.21126 1.72489 1.80601 2.39641 2.84330 3.17299 3.32069 3.34387 3.36115 3.40833 3.79877 4.05055 4.51182 4.52151 4.54612 4.56982 4.70826 4.90886 4.93625 4.99913 5.03945 5.25005 5.37857 5.43350 5.46430 5.51324 5.54551 5.60969 5.64112 5.72367 5.80163 5.92982 5.99159 6.00681 6.06278 6.11881 6.18385 6.26680 6.40937 6.46629 6.55847 6.63176 6.67118 7.55473 7.76484 7.90442 8.10855 8.34363 9.11098 9.83414 10.01699 11.33533 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.002950 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.755385 B = 9487.965591 C =10760.986142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.607 3.393 7 O -0.536 6.536 8 C -0.014 4.014 9 C -0.151 4.151 10 C 0.029 3.971 11 C 0.045 3.955 12 C -0.157 4.157 13 C -0.213 4.213 14 C -0.018 4.018 15 O -0.159 6.159 16 O 0.146 5.854 17 N -0.304 5.304 18 C 0.074 3.926 19 C 0.185 3.815 20 H 0.081 0.919 21 N -0.737 5.737 22 C -0.248 4.248 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.878 3.122 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.212 0.788 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.363 0.637 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -14.657 -11.994 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.393 3.607 7 O -0.413 6.413 8 C -0.172 4.172 9 C -0.173 4.173 10 C -0.034 4.034 11 C -0.006 4.006 12 C -0.177 4.177 13 C -0.232 4.232 14 C -0.086 4.086 15 O -0.055 6.055 16 O 0.066 5.934 17 N -0.001 5.001 18 C -0.051 4.051 19 C 0.073 3.927 20 H 0.099 0.901 21 N -0.379 5.379 22 C -0.378 4.378 23 H 0.111 0.889 24 C -0.186 4.186 25 N -0.576 5.576 26 Si 0.709 3.291 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.203 0.797 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.229 0.771 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.262 -13.701 -11.593 21.736 hybrid contribution 1.019 -0.057 -1.407 1.738 sum -11.242 -13.757 -13.000 22.014 Atomic orbital electron populations 1.21670 0.93355 1.01725 1.01941 1.22106 0.95886 0.95911 0.95410 1.21598 1.01205 0.93837 1.01823 1.22425 1.01221 0.79108 0.97518 1.48286 1.69455 1.05832 1.08547 1.16403 0.77821 0.81228 0.85242 1.90775 1.52020 1.85046 1.13423 1.23261 1.07525 0.97067 0.89342 1.22673 1.04263 0.88572 1.01823 1.20468 1.06994 0.90228 0.85725 1.18059 1.11007 0.87744 0.83779 1.22039 1.03774 0.91398 1.00511 1.21839 1.08344 0.99424 0.93626 1.24336 1.04286 0.81474 0.98516 1.84057 1.71129 1.19448 1.30844 1.85001 1.65828 1.13084 1.29514 1.74423 1.14713 0.92176 1.18801 1.23375 1.02272 1.02185 0.77261 1.21216 0.87733 0.89058 0.94705 0.90090 1.42808 1.09537 1.71168 1.14371 1.19045 0.96418 1.33106 0.89207 0.88908 1.24644 0.96886 1.00745 0.96297 1.69693 1.15389 1.52019 1.20479 0.86655 0.80561 0.80065 0.81862 1.20823 1.21627 1.20432 0.91900 0.92577 0.92744 0.92238 0.93040 0.91424 0.91113 0.90457 0.79690 0.82059 0.82501 0.77117 0.91768 0.89618 0.80239 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.58 37.16 0.32 -1.27 16 2 C -0.09 -1.35 0.84 -152.23 -0.13 -1.48 16 3 C -0.13 -1.81 8.22 37.16 0.31 -1.51 16 4 C 0.12 1.89 5.83 -2.41 -0.01 1.88 16 5 N -0.59 -10.15 3.31 -171.31 -0.57 -10.72 16 6 C 0.61 10.74 7.88 -12.10 -0.10 10.65 16 7 O -0.54 -10.34 17.20 5.37 0.09 -10.25 16 8 C -0.01 -0.23 7.01 -82.66 -0.58 -0.81 16 9 C -0.15 -2.01 10.96 -38.65 -0.42 -2.44 16 10 C 0.03 0.36 7.30 -36.42 -0.27 0.09 16 11 C 0.04 0.47 7.17 -36.71 -0.26 0.21 16 12 C -0.16 -1.38 10.86 -39.33 -0.43 -1.81 16 13 C -0.21 -1.44 10.88 -39.84 -0.43 -1.87 16 14 C -0.02 -0.11 12.08 29.54 0.36 0.25 16 15 O -0.16 -1.52 10.67 4.58 0.05 -1.47 16 16 O 0.15 2.00 11.21 15.73 0.18 2.18 16 17 N -0.30 -4.80 9.69 33.36 0.32 -4.48 16 18 C 0.07 1.32 4.98 -3.07 -0.02 1.31 16 19 C 0.18 3.34 2.86 -66.10 -0.19 3.15 16 20 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 21 N -0.74 -16.41 4.42 -51.65 -0.23 -16.64 16 22 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16 23 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 25 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 26 Si 0.88 21.74 27.73 -169.99 -4.71 17.02 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 33 H 0.06 0.95 6.39 -51.93 -0.33 0.62 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.19 7.99 -51.93 -0.41 0.78 16 37 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 38 H 0.19 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 40 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 43 H 0.09 1.78 7.68 -51.92 -0.40 1.38 16 44 H 0.36 8.09 3.98 -40.82 -0.16 7.93 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.91 379.11 -6.41 -39.32 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.92 Total: 7.37 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.11 Total: -0.28 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.30 Total: -59.59 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.32 Total: -9.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.91 -6.41 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996112290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.354 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds