Wall clock time and date at job start Wed Apr 1 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 110.88592 * 2 1 4 4 C 1.55129 * 111.19327 * 236.06765 * 2 1 3 5 5 N 1.47426 * 104.71948 * 279.18994 * 4 2 1 6 6 C 1.34777 * 125.64308 * 155.82098 * 5 4 2 7 7 O 1.21493 * 120.00329 * 359.71510 * 6 5 4 8 8 C 1.48351 * 119.99570 * 179.44061 * 6 5 4 9 9 C 1.41717 * 126.80762 * 179.97438 * 8 6 5 10 10 C 1.37161 * 103.79126 * 179.89244 * 9 8 6 11 11 C 1.47006 * 126.85342 * 180.11610 * 10 9 8 12 12 C 1.36345 * 125.96137 * 180.26954 * 11 10 9 13 13 C 1.40701 * 106.71792 * 180.02562 * 12 11 10 14 14 C 1.34889 * 107.08298 * 0.02562 * 13 12 11 15 15 O 1.34218 * 108.73101 * 359.73132 * 14 13 12 16 16 O 1.34580 * 106.28486 * 0.36549 * 10 9 8 17 17 N 1.20874 * 111.68800 * 359.74917 * 16 10 9 18 18 C 1.47017 * 108.70292 * 335.55402 * 5 4 2 19 19 C 1.54316 * 107.27711 * 1.28432 * 18 5 4 20 20 H 1.09003 * 110.72117 * 140.55346 * 19 18 5 21 21 N 1.46499 * 110.72565 * 263.65588 * 19 18 5 22 22 C 1.36936 * 119.99890 * 273.54585 * 21 19 18 23 23 H 1.08006 * 120.00156 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00102 * 179.97438 * 22 21 19 25 25 N 1.31626 * 119.99828 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00050 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47091 * 89.99719 * 26 24 22 28 28 H 1.48500 * 109.47154 * 210.00001 * 26 24 22 29 29 H 1.48504 * 109.47009 * 330.00272 * 26 24 22 30 30 H 1.08999 * 109.47160 * 296.12374 * 1 2 3 31 31 H 1.08997 * 109.46855 * 56.11928 * 1 2 3 32 32 H 1.08997 * 109.47343 * 176.12137 * 1 2 3 33 33 H 1.08999 * 109.47079 * 183.87612 * 3 2 1 34 34 H 1.08993 * 109.46914 * 303.88282 * 3 2 1 35 35 H 1.08999 * 109.46695 * 63.87850 * 3 2 1 36 36 H 1.08999 * 110.49618 * 160.35079 * 4 2 1 37 37 H 1.08994 * 110.34436 * 37.95687 * 4 2 1 38 38 H 1.07996 * 128.10451 * 359.97438 * 9 8 6 39 39 H 1.08004 * 126.64395 * 0.02755 * 12 11 10 40 40 H 1.08008 * 126.45898 * 180.02562 * 13 12 11 41 41 H 1.07997 * 125.63440 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.88390 * 120.70929 * 18 5 4 43 43 H 1.09009 * 109.88166 * 241.71319 * 18 5 4 44 44 H 0.96996 * 120.00279 * 93.54184 * 21 19 18 45 45 H 0.96997 * 119.99672 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2834 -1.5927 7 8 1.9421 -3.1245 -2.7972 8 6 1.8861 -4.6526 -1.0249 9 6 1.8128 -5.8692 -1.7481 10 6 1.7815 -6.8298 -0.7695 11 6 1.7077 -8.2850 -0.9646 12 6 1.6723 -9.2245 0.0229 13 6 1.6042 -10.4777 -0.6129 14 6 1.6017 -10.2481 -1.9421 15 8 1.6586 -8.9234 -2.1508 16 8 1.8262 -6.1740 0.4047 17 7 1.8836 -4.9771 0.2460 18 6 2.0285 -2.2643 0.6969 19 6 2.0862 -0.8075 1.2026 20 1 1.4523 -0.6784 2.0800 21 7 3.4662 -0.4163 1.5004 22 6 4.0022 -0.6812 2.7324 23 1 3.4075 -1.1781 3.4846 24 6 5.3100 -0.3110 3.0144 25 7 5.8250 -0.5652 4.1988 26 14 6.3389 0.5478 1.7133 27 1 6.1602 2.0173 1.8312 28 1 7.7707 0.2059 1.9092 29 1 5.9037 0.1029 0.3649 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0695 34 1 1.6697 1.9732 -0.8531 35 1 1.7822 1.9302 0.9227 36 1 3.1253 -0.5271 -1.3985 37 1 1.4765 -0.6457 -2.0858 38 1 1.7887 -6.0076 -2.8189 39 1 1.6927 -9.0420 1.0872 40 1 1.5618 -11.4420 -0.1281 41 1 1.5561 -11.0048 -2.7113 42 1 1.1218 -2.7475 1.0610 43 1 2.9049 -2.8135 1.0411 44 1 4.0002 0.0303 0.8250 45 1 6.7387 -0.3062 4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996112290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:39 Heat of formation + Delta-G solvation = 56.209991 kcal Electronic energy + Delta-G solvation = -30194.249097 eV Core-core repulsion = 25989.318149 eV Total energy + Delta-G solvation = -4204.930948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -46.32812 -43.56895 -41.53626 -39.53116 -35.96148 -35.44769 -34.77840 -34.36736 -33.61838 -33.07900 -29.89215 -29.85238 -28.35170 -28.09441 -25.86871 -25.09692 -24.59601 -23.27792 -22.64921 -22.34123 -20.73323 -20.49184 -19.50733 -19.26558 -19.16368 -18.24849 -17.48745 -17.34764 -17.07605 -16.78263 -16.50339 -16.14550 -15.89597 -15.34921 -15.14790 -15.05618 -14.65059 -14.55627 -13.91810 -13.89493 -13.74133 -13.71191 -13.62271 -13.49296 -13.27695 -12.98657 -12.87749 -12.83657 -12.73599 -12.29423 -12.00229 -11.96451 -11.80160 -11.73690 -11.64640 -11.59271 -11.33812 -11.03651 -10.90402 -9.89867 -9.38174 -9.26387 -8.04227 -5.37898 -0.51880 0.03819 0.90761 1.11720 1.33433 1.35788 1.41902 1.55320 1.69561 1.86386 2.44412 2.56730 2.62434 3.06659 3.24124 3.34274 3.47435 3.61042 3.68224 3.82243 3.91829 3.92686 3.99058 4.18111 4.20658 4.37029 4.46182 4.51036 4.59219 4.66971 4.74144 4.82426 4.86905 4.89462 4.93784 4.98444 4.99039 5.03518 5.09680 5.22343 5.33772 5.45804 5.47013 5.76174 5.94155 6.15745 6.19654 6.59064 6.81988 7.04395 7.78859 7.97345 9.16960 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.002950 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.755385 B = 9487.965591 C =10760.986142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.605 3.395 7 O -0.555 6.555 8 C -0.033 4.033 9 C -0.162 4.162 10 C 0.049 3.951 11 C 0.003 3.997 12 C -0.148 4.148 13 C -0.224 4.224 14 C 0.002 3.998 15 O -0.174 6.174 16 O 0.149 5.851 17 N -0.328 5.328 18 C 0.091 3.909 19 C 0.174 3.826 20 H 0.082 0.918 21 N -0.737 5.737 22 C -0.224 4.224 23 H 0.064 0.936 24 C -0.056 4.056 25 N -0.979 5.979 26 Si 0.942 3.058 27 H -0.271 1.271 28 H -0.300 1.300 29 H -0.262 1.262 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.199 0.801 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.366 0.634 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 -15.727 -14.176 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.184 4.184 4 C -0.006 4.006 5 N -0.323 5.323 6 C 0.392 3.608 7 O -0.433 6.433 8 C -0.190 4.190 9 C -0.185 4.185 10 C -0.014 4.014 11 C -0.047 4.047 12 C -0.168 4.168 13 C -0.243 4.243 14 C -0.066 4.066 15 O -0.070 6.070 16 O 0.068 5.932 17 N -0.026 5.026 18 C -0.035 4.035 19 C 0.065 3.935 20 H 0.100 0.900 21 N -0.380 5.380 22 C -0.355 4.355 23 H 0.082 0.918 24 C -0.248 4.248 25 N -0.630 5.630 26 Si 0.770 3.230 27 H -0.196 1.196 28 H -0.227 1.227 29 H -0.188 1.188 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.216 0.784 39 H 0.187 0.813 40 H 0.202 0.798 41 H 0.271 0.729 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.200 0.800 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.723 -14.755 -13.808 24.427 hybrid contribution 1.348 -0.005 -0.719 1.528 sum -12.376 -14.759 -14.527 24.125 Atomic orbital electron populations 1.21653 0.90929 1.02007 1.03546 1.22077 0.97576 0.95601 0.92560 1.21608 1.00096 0.93503 1.03171 1.22558 1.01064 0.78431 0.98583 1.48342 1.69315 1.06526 1.08085 1.16626 0.77240 0.81850 0.85068 1.90746 1.52999 1.85512 1.14062 1.23220 1.08789 0.97017 0.89931 1.22791 1.05377 0.87738 1.02559 1.20734 1.04687 0.91270 0.84715 1.17969 1.14937 0.86937 0.84859 1.22397 1.01457 0.92146 1.00836 1.22218 1.08524 0.99689 0.93850 1.25330 1.00769 0.80758 0.99744 1.84060 1.71461 1.20875 1.30595 1.84946 1.65529 1.12562 1.30165 1.74402 1.16018 0.93140 1.19027 1.23027 1.01281 1.01307 0.77866 1.21455 0.85715 0.89922 0.96454 0.90018 1.42760 1.11243 1.71236 1.12771 1.19003 0.95890 1.30558 0.90078 0.91787 1.25357 0.98408 1.02703 0.98358 1.69860 1.15669 1.54585 1.22866 0.85617 0.78075 0.79396 0.79912 1.19635 1.22665 1.18760 0.90932 0.90249 0.93266 0.94077 0.89905 0.91604 0.92196 0.88849 0.78414 0.81286 0.79782 0.72882 0.90636 0.92961 0.79966 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 8.58 71.98 0.62 -2.10 16 2 C -0.08 -2.13 0.84 -50.71 -0.04 -2.17 16 3 C -0.13 -3.30 8.22 71.98 0.59 -2.71 16 4 C 0.12 3.50 5.83 86.93 0.51 4.00 16 5 N -0.59 -20.29 3.31 -814.19 -2.69 -22.99 16 6 C 0.61 21.56 7.88 86.94 0.68 22.25 16 7 O -0.55 -21.35 17.20 -3.69 -0.06 -21.41 16 8 C -0.03 -1.08 7.01 42.80 0.30 -0.78 16 9 C -0.16 -4.37 10.96 22.88 0.25 -4.12 16 10 C 0.05 1.22 7.30 24.32 0.18 1.39 16 11 C 0.00 0.06 7.17 24.13 0.17 0.23 16 12 C -0.15 -2.37 10.86 22.43 0.24 -2.12 16 13 C -0.22 -2.34 10.88 22.10 0.24 -2.10 16 14 C 0.00 0.02 12.08 67.05 0.81 0.83 16 15 O -0.17 -3.01 10.67 -6.52 -0.07 -3.08 16 16 O 0.15 4.16 11.21 66.46 0.75 4.91 16 17 N -0.33 -10.72 9.69 -48.86 -0.47 -11.19 16 18 C 0.09 3.27 4.98 86.73 0.43 3.70 16 19 C 0.17 6.27 2.86 46.18 0.13 6.40 16 20 H 0.08 2.95 8.02 -2.39 -0.02 2.93 16 21 N -0.74 -32.94 4.42 -317.32 -1.40 -34.35 16 22 C -0.22 -12.36 10.46 84.03 0.88 -11.48 16 23 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 24 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 25 N -0.98 -62.20 13.97 21.65 0.30 -61.90 16 26 Si 0.94 45.51 27.73 68.60 1.90 47.41 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 29 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 33 H 0.04 1.23 6.39 -2.39 -0.02 1.21 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.96 7.99 -2.39 -0.02 1.94 16 37 H 0.09 2.56 7.95 -2.39 -0.02 2.54 16 38 H 0.20 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.26 -0.14 8.06 -2.91 -0.02 -0.17 16 42 H 0.08 2.54 7.69 -2.39 -0.02 2.52 16 43 H 0.05 2.25 7.68 -2.38 -0.02 2.23 16 44 H 0.37 16.06 3.98 -92.71 -0.37 15.69 16 45 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -74.01 379.11 5.31 -68.70 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.60 Total: 25.47 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.46 Total: 8.43 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -4.27 Total: -130.42 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.61 Total: -19.59 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Total: -74.01 5.31 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996112290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.912 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds