Wall clock time and date at job start Wed Apr 1 2020 03:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47070 * 126.30501 * 2 1 4 4 C 1.54059 * 110.11239 * 209.06418 * 3 2 1 5 5 C 1.55610 * 104.29706 * 314.80045 * 4 3 2 6 6 H 1.08995 * 111.16866 * 280.00906 * 5 4 3 7 7 C 1.50700 * 111.16802 * 155.78102 * 5 4 3 8 8 O 1.21283 * 119.99803 * 329.99932 * 7 5 4 9 9 N 1.34777 * 119.99675 * 150.27807 * 7 5 4 10 10 C 1.47016 * 125.64953 * 359.74753 * 9 7 5 11 11 C 1.54324 * 107.26889 * 181.02636 * 10 9 7 12 12 H 1.09002 * 110.72222 * 263.64824 * 11 10 9 13 13 N 1.46505 * 110.72082 * 140.55389 * 11 10 9 14 14 C 1.36946 * 119.99562 * 86.45351 * 13 11 10 15 15 H 1.08002 * 120.00269 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99876 * 180.02562 * 14 13 11 17 17 N 1.31608 * 120.00165 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99852 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47303 * 89.99952 * 18 16 14 20 20 H 1.48498 * 109.46982 * 210.00014 * 18 16 14 21 21 H 1.48497 * 109.47223 * 330.00106 * 18 16 14 22 22 C 1.55156 * 102.94413 * 22.19488 * 11 10 9 23 23 C 1.52998 * 111.00584 * 82.57336 * 22 11 10 24 24 C 1.52998 * 111.00318 * 206.38793 * 22 11 10 25 25 C 1.47426 * 125.64311 * 179.44245 * 9 7 5 26 26 S 1.67004 * 126.30292 * 180.02562 * 2 1 3 27 27 O 1.42107 * 105.13389 * 61.03363 * 26 2 1 28 28 O 1.42101 * 105.13358 * 291.36652 * 26 2 1 29 29 H 1.08998 * 109.46754 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47231 * 119.97277 * 1 2 3 31 31 H 1.08997 * 109.46972 * 239.97814 * 1 2 3 32 32 H 1.09004 * 109.35303 * 88.88277 * 3 2 1 33 33 H 1.08995 * 109.29683 * 329.21315 * 3 2 1 34 34 H 1.08992 * 110.47015 * 196.09478 * 4 3 2 35 35 H 1.09002 * 110.57324 * 73.55417 * 4 3 2 36 36 H 1.09004 * 109.88101 * 300.43815 * 10 9 7 37 37 H 1.08997 * 109.88649 * 61.45491 * 10 9 7 38 38 H 0.96995 * 120.00573 * 266.45397 * 13 11 10 39 39 H 0.96999 * 120.00134 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47288 * 59.99943 * 23 22 11 41 41 H 1.09005 * 109.46702 * 180.02562 * 23 22 11 42 42 H 1.09003 * 109.46711 * 299.99559 * 23 22 11 43 43 H 1.08999 * 109.47193 * 59.99378 * 24 22 11 44 44 H 1.09001 * 109.47513 * 179.97438 * 24 22 11 45 45 H 1.09004 * 109.47020 * 299.99492 * 24 22 11 46 46 H 1.08999 * 110.36638 * 274.74255 * 25 9 7 47 47 H 1.09000 * 110.36899 * 37.07072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3358 1.1852 0.0000 4 6 3.6684 0.8634 -0.7028 5 6 4.0863 -0.5177 -0.1203 6 1 4.5454 -0.4079 0.8621 7 6 5.0015 -1.2525 -1.0656 8 8 4.9053 -1.0771 -2.2618 9 7 5.9230 -2.1089 -0.5820 10 6 6.1462 -2.4150 0.8385 11 6 7.3126 -3.4228 0.9122 12 1 6.9366 -4.4436 0.9813 13 7 8.1902 -3.1180 2.0451 14 6 7.9060 -3.6220 3.2863 15 1 7.0348 -4.2438 3.4302 16 6 8.7372 -3.3328 4.3598 17 7 8.4639 -3.8167 5.5527 18 14 10.2438 -2.2567 4.1111 19 1 9.8781 -0.8344 4.3311 20 1 11.2993 -2.6517 5.0781 21 1 10.7518 -2.4286 2.7263 22 6 8.0532 -3.1963 -0.4322 23 6 9.0042 -2.0014 -0.3399 24 6 8.8027 -4.4579 -0.8648 25 6 6.8698 -2.8986 -1.3903 26 16 2.4537 -1.3459 -0.0006 27 8 2.1380 -2.0377 -1.2011 28 8 2.2706 -1.9413 1.2766 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 2.5335 1.4882 1.0283 33 1 1.8368 1.9987 -0.5265 34 1 4.4168 1.6194 -0.4653 35 1 3.5260 0.7949 -1.7813 36 1 6.4086 -1.5044 1.3772 37 1 5.2462 -2.8540 1.2691 38 1 8.9725 -2.5593 1.9160 39 1 9.0449 -3.6150 6.3028 40 1 9.7436 -2.1848 0.4396 41 1 9.5099 -1.8648 -1.2959 42 1 8.4364 -1.1029 -0.0981 43 1 8.0942 -5.2767 -0.9897 44 1 9.3125 -4.2717 -1.8101 45 1 9.5354 -4.7245 -0.1029 46 1 6.4039 -3.8267 -1.7212 47 1 7.2128 -2.3187 -2.2471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996401129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:57 Heat of formation + Delta-G solvation = -65.191621 kcal Electronic energy + Delta-G solvation = -30273.707582 eV Core-core repulsion = 26198.956217 eV Total energy + Delta-G solvation = -4074.751366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.41063 -38.54960 -37.29646 -37.19120 -36.08845 -34.40981 -33.60971 -33.05403 -31.21162 -28.67010 -28.04719 -27.24417 -26.36333 -25.48807 -23.88568 -22.60119 -21.43911 -19.87194 -19.19102 -18.74690 -17.89182 -17.66642 -17.25182 -16.85865 -16.15822 -15.96153 -15.36561 -15.08058 -14.74177 -14.62835 -14.34531 -13.89727 -13.81141 -13.60259 -13.56751 -13.37307 -13.16389 -12.79032 -12.67561 -12.56108 -12.32770 -12.23900 -12.20730 -12.13909 -11.78670 -11.74629 -11.50775 -11.43792 -11.41087 -11.08194 -10.85079 -10.72131 -10.65993 -10.38722 -10.13584 -10.00468 -9.65211 -9.34821 -9.09712 -8.60608 -7.46796 -5.88821 -3.27535 -0.19200 2.19127 2.45556 2.75998 3.25949 3.28416 3.33823 3.36287 3.51576 3.99207 4.11505 4.37945 4.46455 4.58057 4.61577 4.79573 4.85345 4.87817 4.91762 5.18120 5.23603 5.28049 5.30286 5.38037 5.42944 5.50485 5.51888 5.53778 5.57626 5.61502 5.70755 5.81214 5.89313 6.02684 6.06626 6.14023 6.16280 6.18514 6.33572 6.38468 6.46873 6.64400 7.42833 7.85799 7.95288 8.29602 9.06140 9.77583 9.95381 11.28721 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003736 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.968888 B = 7492.237060 C = 8492.100929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.998 5.998 3 C 0.081 3.919 4 C -0.109 4.109 5 C -0.597 4.597 6 H 0.168 0.832 7 C 0.552 3.448 8 O -0.522 6.522 9 N -0.606 5.606 10 C 0.058 3.942 11 C 0.187 3.813 12 H 0.079 0.921 13 N -0.735 5.735 14 C -0.256 4.256 15 H 0.094 0.906 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.090 4.090 23 C -0.136 4.136 24 C -0.131 4.131 25 C 0.117 3.883 26 S 2.590 3.410 27 O -0.936 6.936 28 O -0.937 6.937 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.367 0.633 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 10.407 -13.940 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.708 4.708 6 H 0.185 0.815 7 C 0.337 3.663 8 O -0.399 6.399 9 N -0.340 5.340 10 C -0.067 4.067 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.378 5.378 14 C -0.385 4.385 15 H 0.112 0.888 16 C -0.184 4.184 17 N -0.573 5.573 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.091 4.091 23 C -0.193 4.193 24 C -0.188 4.188 25 C -0.005 4.005 26 S 2.682 3.318 27 O -0.925 6.925 28 O -0.927 6.927 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.203 0.797 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.315 9.445 -14.289 19.995 hybrid contribution 1.462 1.553 0.286 2.152 sum -8.854 10.998 -14.003 19.885 Atomic orbital electron populations 1.21293 0.75673 1.03527 1.01662 1.57141 1.13871 1.21306 1.91884 1.22141 0.89679 0.90645 1.02076 1.22682 0.96465 0.92941 1.02721 1.30970 1.19922 1.10610 1.09271 0.81458 1.18474 0.80858 0.79395 0.87587 1.90723 1.69732 1.64557 1.14872 1.48468 1.34201 1.41549 1.09759 1.23531 1.01877 1.02019 0.79323 1.21173 0.88708 0.96283 0.86288 0.90289 1.42862 1.28289 1.60993 1.05659 1.19107 1.09684 1.26214 0.83544 0.88818 1.24660 0.98474 0.99934 0.95321 1.69688 1.39484 1.48498 0.99589 0.86668 0.84145 0.81070 0.77255 1.20965 1.21515 1.20249 1.22073 0.94493 0.96720 0.95826 1.21703 0.99015 0.96980 1.01642 1.21664 1.00419 0.95653 1.01080 1.22456 0.88506 0.95281 0.94251 1.06166 0.76694 0.73613 0.75358 1.93633 1.80771 1.70539 1.47592 1.93661 1.83300 1.73943 1.41750 0.90065 0.91948 0.91910 0.90292 0.88499 0.86682 0.87281 0.90156 0.91348 0.79715 0.92847 0.91614 0.92664 0.92548 0.92281 0.92822 0.91305 0.90742 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.96 11.40 59.85 0.68 1.65 16 2 N -1.00 -10.21 3.72 -120.71 -0.45 -10.66 16 3 C 0.08 0.58 6.81 -3.18 -0.02 0.56 16 4 C -0.11 -0.93 6.16 -24.79 -0.15 -1.09 16 5 C -0.60 -7.21 3.32 -26.49 -0.09 -7.30 16 6 H 0.17 1.74 7.06 -51.93 -0.37 1.38 16 7 C 0.55 8.40 6.80 -10.98 -0.07 8.32 16 8 O -0.52 -9.08 16.22 5.55 0.09 -8.99 16 9 N -0.61 -9.18 3.31 -170.38 -0.56 -9.74 16 10 C 0.06 0.94 5.55 -3.07 -0.02 0.93 16 11 C 0.19 3.27 2.84 -66.09 -0.19 3.08 16 12 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 13 N -0.73 -15.64 4.88 -51.64 -0.25 -15.89 16 14 C -0.26 -6.69 10.46 -15.05 -0.16 -6.84 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 16 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 17 N -0.93 -27.83 13.97 55.49 0.78 -27.05 16 18 Si 0.88 20.75 27.74 -169.99 -4.71 16.03 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 22 C -0.09 -1.28 0.87 -152.24 -0.13 -1.41 16 23 C -0.14 -1.90 7.94 37.16 0.30 -1.61 16 24 C -0.13 -1.66 8.68 37.16 0.32 -1.34 16 25 C 0.12 1.63 5.85 -2.41 -0.01 1.62 16 26 S 2.59 36.18 5.83 -107.50 -0.63 35.56 16 27 O -0.94 -16.02 17.75 -57.41 -1.02 -17.04 16 28 O -0.94 -15.77 18.14 -57.41 -1.04 -16.81 16 29 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.05 7.29 -51.93 -0.38 0.67 16 36 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.37 7.65 3.12 -40.82 -0.13 7.52 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.81 7.91 -51.93 -0.41 0.39 16 43 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 47 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -35.80 383.71 -9.16 -44.96 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.49 Total: 7.02 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.36 Total: -3.18 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.49 Total: -63.34 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.97 Total: -42.84 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.03 kcal Atomic # 16 Polarization: 36.18 SS G_CDS: -0.63 Total: 35.56 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.80 -9.16 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996401129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.235 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds