Wall clock time and date at job start Wed Apr 1 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47070 * 126.30501 * 2 1 4 4 C 1.54059 * 110.11239 * 209.06418 * 3 2 1 5 5 C 1.55610 * 104.29706 * 314.80045 * 4 3 2 6 6 H 1.08995 * 111.16866 * 280.00906 * 5 4 3 7 7 C 1.50700 * 111.16802 * 155.78102 * 5 4 3 8 8 O 1.21283 * 119.99803 * 329.99932 * 7 5 4 9 9 N 1.34777 * 119.99675 * 150.27807 * 7 5 4 10 10 C 1.47016 * 125.64953 * 359.74753 * 9 7 5 11 11 C 1.54324 * 107.26889 * 181.02636 * 10 9 7 12 12 H 1.09002 * 110.72222 * 263.64824 * 11 10 9 13 13 N 1.46505 * 110.72082 * 140.55389 * 11 10 9 14 14 C 1.36946 * 119.99562 * 86.45351 * 13 11 10 15 15 H 1.08002 * 120.00269 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99876 * 180.02562 * 14 13 11 17 17 N 1.31608 * 120.00165 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99852 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47303 * 89.99952 * 18 16 14 20 20 H 1.48498 * 109.46982 * 210.00014 * 18 16 14 21 21 H 1.48497 * 109.47223 * 330.00106 * 18 16 14 22 22 C 1.55156 * 102.94413 * 22.19488 * 11 10 9 23 23 C 1.52998 * 111.00584 * 82.57336 * 22 11 10 24 24 C 1.52998 * 111.00318 * 206.38793 * 22 11 10 25 25 C 1.47426 * 125.64311 * 179.44245 * 9 7 5 26 26 S 1.67004 * 126.30292 * 180.02562 * 2 1 3 27 27 O 1.42107 * 105.13389 * 61.03363 * 26 2 1 28 28 O 1.42101 * 105.13358 * 291.36652 * 26 2 1 29 29 H 1.08998 * 109.46754 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47231 * 119.97277 * 1 2 3 31 31 H 1.08997 * 109.46972 * 239.97814 * 1 2 3 32 32 H 1.09004 * 109.35303 * 88.88277 * 3 2 1 33 33 H 1.08995 * 109.29683 * 329.21315 * 3 2 1 34 34 H 1.08992 * 110.47015 * 196.09478 * 4 3 2 35 35 H 1.09002 * 110.57324 * 73.55417 * 4 3 2 36 36 H 1.09004 * 109.88101 * 300.43815 * 10 9 7 37 37 H 1.08997 * 109.88649 * 61.45491 * 10 9 7 38 38 H 0.96995 * 120.00573 * 266.45397 * 13 11 10 39 39 H 0.96999 * 120.00134 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47288 * 59.99943 * 23 22 11 41 41 H 1.09005 * 109.46702 * 180.02562 * 23 22 11 42 42 H 1.09003 * 109.46711 * 299.99559 * 23 22 11 43 43 H 1.08999 * 109.47193 * 59.99378 * 24 22 11 44 44 H 1.09001 * 109.47513 * 179.97438 * 24 22 11 45 45 H 1.09004 * 109.47020 * 299.99492 * 24 22 11 46 46 H 1.08999 * 110.36638 * 274.74255 * 25 9 7 47 47 H 1.09000 * 110.36899 * 37.07072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3358 1.1852 0.0000 4 6 3.6684 0.8634 -0.7028 5 6 4.0863 -0.5177 -0.1203 6 1 4.5454 -0.4079 0.8621 7 6 5.0015 -1.2525 -1.0656 8 8 4.9053 -1.0771 -2.2618 9 7 5.9230 -2.1089 -0.5820 10 6 6.1462 -2.4150 0.8385 11 6 7.3126 -3.4228 0.9122 12 1 6.9366 -4.4436 0.9813 13 7 8.1902 -3.1180 2.0451 14 6 7.9060 -3.6220 3.2863 15 1 7.0348 -4.2438 3.4302 16 6 8.7372 -3.3328 4.3598 17 7 8.4639 -3.8167 5.5527 18 14 10.2438 -2.2567 4.1111 19 1 9.8781 -0.8344 4.3311 20 1 11.2993 -2.6517 5.0781 21 1 10.7518 -2.4286 2.7263 22 6 8.0532 -3.1963 -0.4322 23 6 9.0042 -2.0014 -0.3399 24 6 8.8027 -4.4579 -0.8648 25 6 6.8698 -2.8986 -1.3903 26 16 2.4537 -1.3459 -0.0006 27 8 2.1380 -2.0377 -1.2011 28 8 2.2706 -1.9413 1.2766 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 2.5335 1.4882 1.0283 33 1 1.8368 1.9987 -0.5265 34 1 4.4168 1.6194 -0.4653 35 1 3.5260 0.7949 -1.7813 36 1 6.4086 -1.5044 1.3772 37 1 5.2462 -2.8540 1.2691 38 1 8.9725 -2.5593 1.9160 39 1 9.0449 -3.6150 6.3028 40 1 9.7436 -2.1848 0.4396 41 1 9.5099 -1.8648 -1.2959 42 1 8.4364 -1.1029 -0.0981 43 1 8.0942 -5.2767 -0.9897 44 1 9.3125 -4.2717 -1.8101 45 1 9.5354 -4.7245 -0.1029 46 1 6.4039 -3.8267 -1.7212 47 1 7.2128 -2.3187 -2.2471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996401129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:56 Heat of formation + Delta-G solvation = -93.340218 kcal Electronic energy + Delta-G solvation = -30274.928197 eV Core-core repulsion = 26198.956217 eV Total energy + Delta-G solvation = -4075.971980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.64118 -39.75833 -38.38865 -38.10518 -37.25469 -36.05725 -34.86223 -34.03743 -33.08587 -29.74353 -29.37914 -28.33372 -27.26617 -26.34217 -25.65496 -23.46910 -22.84576 -21.01751 -20.58528 -19.89862 -19.48291 -18.85277 -18.23335 -17.92711 -17.37516 -17.14675 -16.54619 -16.39324 -16.02988 -15.76208 -15.41301 -15.26372 -15.05867 -14.92524 -14.41345 -14.37964 -14.25899 -14.00339 -13.94847 -13.75873 -13.52478 -13.46413 -13.35453 -13.25124 -12.97168 -12.94316 -12.81555 -12.64192 -12.47011 -12.28119 -12.18202 -11.99167 -11.91412 -11.79910 -11.66253 -11.41707 -11.25372 -10.97946 -10.07359 -9.86057 -9.38877 -8.01092 -5.37177 -1.24372 1.25858 1.31746 1.38111 1.41324 1.48708 1.61963 2.29817 2.48531 2.69908 2.88998 3.26654 3.30446 3.37949 3.51641 3.55549 3.66589 3.80574 3.99945 4.04582 4.15122 4.23105 4.25968 4.36194 4.58202 4.60708 4.68580 4.71347 4.73962 4.75389 4.79995 4.88269 4.91311 4.93648 4.96677 4.99746 5.03345 5.10787 5.16831 5.34611 5.46309 5.53541 5.78784 6.18414 6.22881 6.73995 7.07524 7.79990 8.00501 9.19961 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003736 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.968888 B = 7492.237060 C = 8492.100929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.994 5.994 3 C 0.075 3.925 4 C -0.104 4.104 5 C -0.588 4.588 6 H 0.184 0.816 7 C 0.548 3.452 8 O -0.544 6.544 9 N -0.607 5.607 10 C 0.066 3.934 11 C 0.176 3.824 12 H 0.068 0.932 13 N -0.733 5.733 14 C -0.236 4.236 15 H 0.059 0.941 16 C -0.055 4.055 17 N -0.980 5.980 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.299 1.299 21 H -0.247 1.247 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.129 4.129 25 C 0.115 3.885 26 S 2.579 3.421 27 O -0.981 6.981 28 O -0.980 6.980 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.373 0.627 39 H 0.258 0.742 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 13.344 -15.952 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.840 5.840 3 C -0.049 4.049 4 C -0.143 4.143 5 C -0.701 4.701 6 H 0.201 0.799 7 C 0.334 3.666 8 O -0.422 6.422 9 N -0.340 5.340 10 C -0.060 4.060 11 C 0.066 3.934 12 H 0.086 0.914 13 N -0.378 5.378 14 C -0.366 4.366 15 H 0.077 0.923 16 C -0.247 4.247 17 N -0.630 5.630 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.226 1.226 21 H -0.171 1.171 22 C -0.080 4.080 23 C -0.192 4.192 24 C -0.186 4.186 25 C -0.007 4.007 26 S 2.675 3.325 27 O -0.970 6.970 28 O -0.969 6.969 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.210 0.790 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.578 12.371 -16.369 22.643 hybrid contribution 1.109 0.621 0.836 1.521 sum -8.469 12.992 -15.532 21.949 Atomic orbital electron populations 1.21592 0.74263 1.05964 1.01504 1.56984 1.14623 1.20763 1.91632 1.22459 0.88655 0.90028 1.03788 1.22881 0.98057 0.91259 1.02150 1.30910 1.17381 1.11993 1.09782 0.79862 1.18880 0.80816 0.79167 0.87759 1.90711 1.70341 1.65263 1.15900 1.48498 1.34644 1.41693 1.09185 1.23227 1.00874 1.01643 0.80236 1.21346 0.89174 0.95956 0.86968 0.91429 1.42737 1.29194 1.60928 1.04920 1.19029 1.07833 1.24300 0.85475 0.92295 1.25429 1.02127 1.02200 0.94936 1.69876 1.41227 1.51161 1.00744 0.85585 0.79812 0.79064 0.78342 1.20247 1.22586 1.17143 1.22027 0.94673 0.97906 0.93367 1.21708 0.98544 0.96325 1.02662 1.21667 1.00161 0.94968 1.01834 1.22578 0.88104 0.95716 0.94314 1.06083 0.77835 0.74578 0.74031 1.93576 1.81960 1.72751 1.48694 1.93610 1.84358 1.75903 1.43067 0.86223 0.92247 0.92205 0.88170 0.84956 0.83493 0.88217 0.89868 0.92268 0.79044 0.93326 0.92919 0.89979 0.92874 0.91812 0.90129 0.92811 0.90092 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.54 11.40 127.77 1.46 3.00 16 2 N -0.99 -18.61 3.72 -535.83 -1.99 -20.60 16 3 C 0.08 0.81 6.81 86.63 0.59 1.40 16 4 C -0.10 -1.47 6.16 31.85 0.20 -1.27 16 5 C -0.59 -13.33 3.32 30.75 0.10 -13.22 16 6 H 0.18 3.51 7.06 -2.39 -0.02 3.49 16 7 C 0.55 15.98 6.80 87.66 0.60 16.58 16 8 O -0.54 -18.22 16.22 -3.04 -0.05 -18.27 16 9 N -0.61 -17.65 3.31 -811.35 -2.69 -20.33 16 10 C 0.07 2.12 5.55 86.73 0.48 2.60 16 11 C 0.18 6.05 2.84 46.18 0.13 6.19 16 12 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 13 N -0.73 -30.80 4.88 -317.31 -1.55 -32.35 16 14 C -0.24 -12.55 10.46 84.03 0.88 -11.67 16 15 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 16 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 17 N -0.98 -60.80 13.97 21.65 0.30 -60.50 16 18 Si 0.94 42.59 27.74 68.60 1.90 44.50 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.25 -9.80 6.52 99.48 0.65 -9.16 16 22 C -0.08 -2.07 0.87 -50.71 -0.04 -2.12 16 23 C -0.14 -3.37 7.94 71.98 0.57 -2.79 16 24 C -0.13 -2.98 8.68 71.98 0.62 -2.35 16 25 C 0.11 2.96 5.85 86.93 0.51 3.47 16 26 S 2.58 72.42 5.83 -56.49 -0.33 72.09 16 27 O -0.98 -34.62 17.75 -127.77 -2.27 -36.89 16 28 O -0.98 -34.18 18.14 -127.77 -2.32 -36.50 16 29 H 0.12 0.76 8.11 -2.39 -0.02 0.74 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.67 7.29 -2.39 -0.02 1.65 16 36 H 0.08 2.63 7.70 -2.39 -0.02 2.61 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.37 14.85 3.12 -92.71 -0.29 14.57 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.05 1.46 6.34 -2.39 -0.02 1.45 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.05 1.35 7.91 -2.39 -0.02 1.34 16 43 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 47 H 0.09 2.21 7.95 -2.39 -0.02 2.19 16 Total: -1.00 -81.22 383.71 -1.80 -83.03 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.62 Total: 28.63 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 6.56 Total: -2.81 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -5.92 Total: -133.78 kcal Atomic # 8 Polarization: -87.02 SS G_CDS: -4.63 Total: -91.65 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.90 Total: 44.50 kcal Atomic # 16 Polarization: 72.42 SS G_CDS: -0.33 Total: 72.09 kcal Total: -81.22 -1.80 -83.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996401129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.314 kcal (2) G-P(sol) polarization free energy of solvation -81.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds