Wall clock time and date at job start Wed Apr 1 2020 03:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34661 * 125.80112 * 2 1 4 4 H 0.96992 * 124.85420 * 359.97438 * 3 2 1 5 5 C 1.36449 * 110.29812 * 179.97438 * 3 2 1 6 6 C 1.34492 * 108.85484 * 359.70956 * 5 3 2 7 7 C 1.36772 * 125.80403 * 179.97438 * 2 1 3 8 8 C 1.47267 * 126.94160 * 0.03085 * 7 2 1 9 9 O 1.21623 * 119.99960 * 49.44902 * 8 7 2 10 10 N 1.34776 * 119.99867 * 229.45747 * 8 7 2 11 11 C 1.46923 * 120.63056 * 355.67198 * 10 8 7 12 12 C 1.53191 * 108.77347 * 126.37407 * 11 10 8 13 13 C 1.53043 * 109.33822 * 54.62058 * 12 11 10 14 14 H 1.09000 * 109.43336 * 58.69208 * 13 12 11 15 15 C 1.52999 * 109.48306 * 178.64696 * 13 12 11 16 16 F 1.39899 * 109.47148 * 180.08595 * 15 13 12 17 17 F 1.39898 * 109.47322 * 300.08143 * 15 13 12 18 18 F 1.39895 * 109.47483 * 60.08668 * 15 13 12 19 19 C 1.53033 * 109.53887 * 298.67995 * 13 12 11 20 20 H 1.09003 * 109.50019 * 181.28494 * 19 13 12 21 21 N 1.46502 * 109.50207 * 301.35108 * 19 13 12 22 22 C 1.36934 * 120.00128 * 204.93573 * 21 19 13 23 23 H 1.08003 * 119.99845 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99847 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00265 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99828 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47022 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47269 * 119.99459 * 26 24 22 29 29 H 1.48499 * 109.46991 * 239.99358 * 26 24 22 30 30 C 1.46920 * 120.63007 * 175.65656 * 10 8 7 31 31 H 1.08991 * 109.47462 * 270.02696 * 1 2 3 32 32 H 1.08996 * 109.46546 * 30.02908 * 1 2 3 33 33 H 1.08998 * 109.46916 * 150.02571 * 1 2 3 34 34 H 1.08002 * 125.57511 * 179.97438 * 5 3 2 35 35 H 1.07999 * 126.83166 * 180.26239 * 6 5 3 36 36 H 1.08994 * 109.58930 * 246.16051 * 11 10 8 37 37 H 1.08997 * 109.58671 * 6.58726 * 11 10 8 38 38 H 1.09003 * 109.50074 * 174.58900 * 12 11 10 39 39 H 1.09001 * 109.50055 * 294.68323 * 12 11 10 40 40 H 0.97006 * 119.99771 * 24.93366 * 21 19 13 41 41 H 0.96999 * 120.00299 * 180.02562 * 25 24 22 42 42 H 1.09005 * 109.58805 * 113.83555 * 30 10 8 43 43 H 1.09003 * 109.70872 * 353.48401 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6096 0.7275 0.0006 6 6 3.6882 -0.6151 0.0074 7 6 2.3071 -1.1093 0.0005 8 6 1.8703 -2.5156 0.0005 9 8 1.0363 -2.8934 -0.8001 10 7 2.3946 -3.3841 0.8878 11 6 3.4700 -2.9668 1.7979 12 6 3.0515 -3.2886 3.2359 13 6 2.6824 -4.7704 3.3368 14 1 3.5375 -5.3781 3.0407 15 6 2.2962 -5.1031 4.7794 16 9 1.9607 -6.4581 4.8717 17 9 3.3764 -4.8315 5.6258 18 9 1.1983 -4.3240 5.1597 19 6 1.5005 -5.0677 2.4112 20 1 1.2236 -6.1181 2.5005 21 7 0.3609 -4.2278 2.7880 22 6 -0.9140 -4.6301 2.4911 23 1 -1.0792 -5.5664 1.9788 24 6 -1.9937 -3.8340 2.8478 25 7 -1.7923 -2.6927 3.4717 26 14 -3.7328 -4.3831 2.4434 27 1 -3.6886 -5.6931 1.7455 28 1 -4.5142 -4.5170 3.6991 29 1 -4.3781 -3.3756 1.5639 30 6 1.9014 -4.7660 0.9637 31 1 -0.3634 0.0005 1.0276 32 1 -0.3632 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5134 34 1 4.4498 1.4060 0.0003 35 1 4.5890 -1.2109 0.0135 36 1 4.3849 -3.5066 1.5541 37 1 3.6381 -1.8946 1.6975 38 1 3.8784 -3.0728 3.9125 39 1 2.1893 -2.6800 3.5088 40 1 0.5093 -3.3867 3.2479 41 1 -2.5469 -2.1366 3.7212 42 1 2.6886 -5.4525 0.6519 43 1 1.0352 -4.8834 0.3126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998257548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:24 Heat of formation + Delta-G solvation = -120.767594 kcal Electronic energy + Delta-G solvation = -32910.558529 eV Core-core repulsion = 28156.096517 eV Total energy + Delta-G solvation = -4754.462012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.48896 -47.07041 -46.79808 -41.10999 -39.32229 -37.15491 -34.12750 -32.64219 -31.36216 -31.35511 -30.62959 -28.64660 -27.02395 -25.84892 -23.99731 -23.25128 -22.54765 -21.61280 -20.63340 -19.39221 -18.34694 -17.77007 -17.61462 -17.53709 -17.03770 -16.80962 -15.67776 -15.42944 -14.85230 -14.52644 -14.26907 -14.20208 -13.92403 -13.68277 -13.51814 -13.49981 -13.39068 -13.19376 -13.05369 -12.98019 -12.84559 -12.72228 -12.51661 -12.29858 -12.26967 -12.08765 -12.02870 -11.47152 -11.35149 -10.94575 -10.82115 -10.79161 -10.54673 -10.28652 -9.93382 -9.62170 -9.30877 -8.96753 -8.58293 -8.12032 -7.93128 -6.89040 -5.69732 -2.98326 2.23375 2.60193 3.20643 3.31333 3.49174 3.53918 3.55580 3.56754 3.85862 4.32904 4.44157 4.61297 4.67614 4.97876 5.08777 5.11066 5.19533 5.33928 5.39293 5.43752 5.49294 5.52120 5.62170 5.68433 5.81144 5.84743 5.97043 5.99553 6.05653 6.11809 6.16552 6.20854 6.35807 6.47368 6.57678 6.67694 6.90921 7.08604 7.18413 7.57669 7.77045 8.02597 8.46025 8.88601 9.60033 10.10554 10.46476 11.52240 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.005875 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.927399 B = 4764.517600 C = 6738.642809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.099 3.901 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.022 4.022 6 C -0.174 4.174 7 C -0.221 4.221 8 C 0.600 3.400 9 O -0.541 6.541 10 N -0.593 5.593 11 C 0.112 3.888 12 C -0.133 4.133 13 C -0.138 4.138 14 H 0.106 0.894 15 C 0.455 3.545 16 F -0.189 7.189 17 F -0.200 7.200 18 F -0.155 7.155 19 C 0.164 3.836 20 H 0.071 0.929 21 N -0.709 5.709 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.293 1.293 30 C 0.098 3.902 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.389 0.611 41 H 0.252 0.748 42 H 0.050 0.950 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.075 5.248 -2.966 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.149 4.149 6 C -0.199 4.199 7 C -0.230 4.230 8 C 0.389 3.611 9 O -0.418 6.418 10 N -0.325 5.325 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.159 4.159 14 H 0.124 0.876 15 C 0.401 3.599 16 F -0.170 7.170 17 F -0.181 7.181 18 F -0.136 7.136 19 C 0.051 3.949 20 H 0.089 0.911 21 N -0.352 5.352 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.734 3.266 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.220 1.220 30 C -0.028 4.028 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.412 5.072 -3.399 15.652 hybrid contribution -0.953 0.400 0.389 1.104 sum 13.459 5.472 -3.010 14.837 Atomic orbital electron populations 1.20540 0.86965 1.03831 1.04190 1.20276 0.93683 0.85429 1.02364 1.41522 1.06120 1.08268 1.59268 0.75120 1.21615 0.85687 0.96286 1.11339 1.21925 0.95476 0.93407 1.09062 1.20131 0.93208 0.92407 1.17303 1.17279 0.79965 0.83867 0.79973 1.90740 1.33120 1.78657 1.39281 1.47643 1.37208 1.11827 1.35809 1.21768 0.89383 1.02151 0.87881 1.21958 1.03137 0.94009 0.98072 1.22760 1.02417 1.00328 0.90382 0.87570 1.20503 0.75020 0.74488 0.89884 1.93133 1.92721 1.34236 1.96908 1.93110 1.56435 1.93728 1.74864 1.93311 1.53892 1.74001 1.92382 1.20602 0.86640 0.96837 0.90772 0.91109 1.42462 1.00263 1.23246 1.69202 1.19181 0.82985 1.03328 1.31034 0.91203 1.24635 0.97543 0.96906 1.01021 1.69674 1.29583 1.12832 1.45379 0.86185 0.85398 0.77740 0.77256 1.20582 1.22111 1.22019 1.22405 0.99483 0.80804 1.00075 0.89640 0.92087 0.88514 0.81749 0.83968 0.91929 0.88113 0.90375 0.89300 0.77456 0.93838 0.93139 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.23 36.01 0.37 -1.18 16 2 C 0.10 1.51 7.17 -81.88 -0.59 0.92 16 3 N -0.56 -6.15 5.90 -9.10 -0.05 -6.21 16 4 H 0.41 3.18 8.96 -40.82 -0.37 2.82 16 5 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 6 C -0.17 -2.17 8.73 -37.50 -0.33 -2.50 16 7 C -0.22 -3.65 5.25 -103.35 -0.54 -4.19 16 8 C 0.60 11.75 7.34 -12.59 -0.09 11.66 16 9 O -0.54 -12.63 15.52 5.26 0.08 -12.55 16 10 N -0.59 -10.20 2.89 -174.10 -0.50 -10.70 16 11 C 0.11 1.49 5.97 -3.71 -0.02 1.47 16 12 C -0.13 -1.93 4.95 -26.61 -0.13 -2.06 16 13 C -0.14 -2.12 2.01 -90.58 -0.18 -2.31 16 14 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.46 7.91 2.69 37.16 0.10 8.01 16 16 F -0.19 -3.39 16.77 2.25 0.04 -3.35 16 17 F -0.20 -3.16 16.77 2.25 0.04 -3.12 16 18 F -0.15 -3.32 14.40 2.25 0.03 -3.28 16 19 C 0.16 3.07 2.45 -67.81 -0.17 2.91 16 20 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 21 N -0.71 -16.89 3.68 -53.31 -0.20 -17.09 16 22 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 26 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 30 C 0.10 1.75 6.02 -3.71 -0.02 1.72 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.83 7.04 -51.93 -0.37 1.47 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.47 7.72 -52.49 -0.41 1.07 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.29 4.50 -51.93 -0.23 1.06 16 38 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 39 H 0.09 1.60 6.11 -51.93 -0.32 1.28 16 40 H 0.39 9.92 4.94 -40.82 -0.20 9.72 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 2.13 7.04 -51.93 -0.37 1.77 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -34.04 356.71 -6.68 -40.72 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.14 Total: 11.83 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.05 Total: 7.26 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.03 Total: -60.69 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 9 Polarization: -9.86 SS G_CDS: 0.11 Total: -9.76 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.04 -6.68 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998257548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.049 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds