Wall clock time and date at job start Wed Apr 1 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34660 * 125.80203 * 2 1 4 4 H 0.97003 * 124.85023 * 359.97312 * 3 2 1 5 5 C 1.36443 * 110.29927 * 179.69606 * 3 2 1 6 6 C 1.34490 * 108.85666 * 0.27107 * 5 3 2 7 7 C 1.36768 * 125.80129 * 180.15272 * 2 1 3 8 8 C 1.47261 * 126.94284 * 0.03365 * 7 2 1 9 9 O 1.21620 * 119.99914 * 311.33225 * 8 7 2 10 10 N 1.34785 * 119.99915 * 131.33244 * 8 7 2 11 11 C 1.46923 * 120.62777 * 4.05723 * 10 8 7 12 12 C 1.52766 * 109.00158 * 233.58398 * 11 10 8 13 13 C 1.53037 * 109.38417 * 305.58518 * 12 11 10 14 14 H 1.09002 * 109.45502 * 301.23197 * 13 12 11 15 15 C 1.52997 * 109.46048 * 181.26260 * 13 12 11 16 16 F 1.39904 * 109.47343 * 299.93668 * 15 13 12 17 17 F 1.39900 * 109.47170 * 59.93760 * 15 13 12 18 18 F 1.39907 * 109.47420 * 179.97438 * 15 13 12 19 19 C 1.53047 * 109.53644 * 61.24747 * 13 12 11 20 20 H 1.08998 * 109.49844 * 178.68396 * 19 13 12 21 21 N 1.46498 * 109.49914 * 58.58406 * 19 13 12 22 22 C 1.36931 * 119.99948 * 155.16757 * 21 19 13 23 23 H 1.07995 * 120.00044 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99842 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00133 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47437 * 90.00041 * 26 24 22 28 28 H 1.48508 * 109.47266 * 209.99702 * 26 24 22 29 29 H 1.48494 * 109.47301 * 329.99768 * 26 24 22 30 30 C 1.46925 * 120.62815 * 184.33433 * 10 8 7 31 31 H 1.08997 * 109.47652 * 90.02027 * 1 2 3 32 32 H 1.09004 * 109.47315 * 210.02725 * 1 2 3 33 33 H 1.09001 * 109.47051 * 330.01723 * 1 2 3 34 34 H 1.08003 * 125.57563 * 180.26893 * 5 3 2 35 35 H 1.07997 * 126.83215 * 180.02562 * 6 5 3 36 36 H 1.08998 * 109.59104 * 353.41634 * 11 10 8 37 37 H 1.08999 * 109.58906 * 113.85022 * 11 10 8 38 38 H 1.09007 * 109.56284 * 185.55481 * 12 11 10 39 39 H 1.08995 * 109.39170 * 65.52119 * 12 11 10 40 40 H 0.96999 * 119.99856 * 335.16282 * 21 19 13 41 41 H 0.97007 * 120.00103 * 180.02562 * 25 24 22 42 42 H 1.09000 * 109.58803 * 246.15623 * 30 10 8 43 43 H 1.09003 * 109.58924 * 6.58107 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7275 0.0068 6 6 3.6882 -0.6151 0.0053 7 6 2.3071 -1.1093 -0.0030 8 6 1.8702 -2.5156 -0.0074 9 8 1.0252 -2.8923 0.7820 10 7 2.4069 -3.3852 -0.8863 11 6 3.4910 -2.9673 -1.7856 12 6 3.0962 -3.2926 -3.2251 13 6 2.7292 -4.7747 -3.3287 14 1 3.5800 -5.3818 -3.0192 15 6 2.3639 -5.1094 -4.7762 16 9 1.2715 -4.3307 -5.1735 17 9 3.4562 -4.8389 -5.6074 18 9 2.0289 -6.4644 -4.8713 19 6 1.5340 -5.0707 -2.4197 20 1 1.2585 -6.1212 -2.5116 21 7 0.4002 -4.2308 -2.8137 22 6 -0.8787 -4.6314 -2.5329 23 1 -1.0516 -5.5667 -2.0214 24 6 -1.9531 -3.8358 -2.9067 25 7 -1.7424 -2.6961 -3.5305 26 14 -3.6978 -4.3826 -2.5243 27 1 -4.0980 -3.8648 -1.1912 28 1 -4.6211 -3.8514 -3.5591 29 1 -3.7616 -5.8661 -2.5185 30 6 1.9149 -4.7672 -0.9672 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3633 0.8901 0.5136 34 1 4.4497 1.4060 0.0124 35 1 4.5890 -1.2109 0.0098 36 1 3.6548 -1.8943 -1.6867 37 1 4.4049 -3.5037 -1.5303 38 1 3.9325 -3.0775 -3.8904 39 1 2.2382 -2.6844 -3.5113 40 1 0.5555 -3.3909 -3.2734 41 1 -2.4932 -2.1400 -3.7914 42 1 2.6976 -5.4533 -0.6437 43 1 1.0391 -4.8814 -0.3284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998257551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:28 Heat of formation + Delta-G solvation = -120.701881 kcal Electronic energy + Delta-G solvation = -32908.113840 eV Core-core repulsion = 28153.654678 eV Total energy + Delta-G solvation = -4754.459163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.48642 -47.07029 -46.79446 -41.11043 -39.32881 -37.15983 -34.12858 -32.64239 -31.36921 -31.35452 -30.63196 -28.65390 -27.02796 -25.84989 -23.99497 -23.24122 -22.54409 -21.61452 -20.63245 -19.39089 -18.34649 -17.76997 -17.61082 -17.53828 -17.03494 -16.80921 -15.67109 -15.42936 -14.85639 -14.52765 -14.26508 -14.20226 -13.92462 -13.68578 -13.51989 -13.49787 -13.38970 -13.19413 -13.05350 -12.97921 -12.84300 -12.72300 -12.51848 -12.30026 -12.27104 -12.09092 -12.02843 -11.47286 -11.35162 -10.93855 -10.80440 -10.78991 -10.54089 -10.29747 -9.95934 -9.61582 -9.30777 -8.95909 -8.58038 -8.11917 -7.93030 -6.88943 -5.69428 -2.98073 2.23299 2.60103 3.20604 3.31425 3.50156 3.54106 3.55339 3.56013 3.86399 4.33101 4.44156 4.61359 4.67784 4.97972 5.08718 5.11318 5.19400 5.34210 5.39431 5.43591 5.49598 5.52559 5.62463 5.68488 5.81342 5.85093 5.96966 5.99475 6.05777 6.11991 6.16621 6.20806 6.36015 6.47121 6.57808 6.67813 6.90994 7.08669 7.18575 7.57648 7.76719 8.02754 8.46339 8.88798 9.60247 10.10791 10.46721 11.52462 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.005873 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.367859 B = 4766.194014 C = 6743.671372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.099 3.901 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.022 4.022 6 C -0.174 4.174 7 C -0.221 4.221 8 C 0.600 3.400 9 O -0.541 6.541 10 N -0.592 5.592 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.138 4.138 14 H 0.106 0.894 15 C 0.455 3.545 16 F -0.155 7.155 17 F -0.200 7.200 18 F -0.188 7.188 19 C 0.164 3.836 20 H 0.071 0.929 21 N -0.709 5.709 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.294 1.294 29 H -0.283 1.283 30 C 0.098 3.902 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.389 0.611 41 H 0.252 0.748 42 H 0.051 0.949 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.996 5.266 3.179 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.149 4.149 6 C -0.199 4.199 7 C -0.231 4.231 8 C 0.389 3.611 9 O -0.418 6.418 10 N -0.325 5.325 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.159 4.159 14 H 0.124 0.876 15 C 0.401 3.599 16 F -0.136 7.136 17 F -0.181 7.181 18 F -0.170 7.170 19 C 0.051 3.949 20 H 0.089 0.911 21 N -0.352 5.352 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.220 1.220 29 H -0.208 1.208 30 C -0.028 4.028 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.326 5.094 3.590 15.623 hybrid contribution -0.946 0.394 -0.392 1.097 sum 13.380 5.489 3.198 14.811 Atomic orbital electron populations 1.20544 0.86984 1.03833 1.04182 1.20273 0.93680 0.85435 1.02354 1.41523 1.06122 1.08267 1.59268 0.75118 1.21613 0.85689 0.96288 1.11341 1.21927 0.95472 0.93407 1.09050 1.20129 0.93202 0.92413 1.17310 1.17276 0.80073 0.83856 0.79875 1.90739 1.32648 1.78696 1.39718 1.47645 1.36522 1.11757 1.36553 1.21677 0.89275 1.02144 0.88072 1.21885 1.03197 0.94014 0.98111 1.22761 1.02506 1.00304 0.90310 0.87561 1.20508 0.74855 0.74498 0.90041 1.93313 1.54279 1.74035 1.91966 1.93111 1.55563 1.93745 1.75711 1.93135 1.92707 1.34247 1.96906 1.20604 0.86597 0.96841 0.90813 0.91112 1.42450 1.00222 1.23399 1.69085 1.19130 0.82896 1.03459 1.31132 0.91262 1.24634 0.97537 0.96941 1.00959 1.69669 1.29835 1.12922 1.45060 0.86262 0.85198 0.77821 0.77321 1.21776 1.22007 1.20824 1.22416 0.99581 0.80806 0.99985 0.89660 0.88494 0.92082 0.81748 0.83964 0.88125 0.91966 0.90344 0.89311 0.77453 0.93790 0.93114 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.23 36.01 0.37 -1.18 16 2 C 0.10 1.51 7.17 -81.88 -0.59 0.92 16 3 N -0.56 -6.15 5.90 -9.11 -0.05 -6.21 16 4 H 0.41 3.18 8.96 -40.82 -0.37 2.82 16 5 C -0.02 -0.22 11.89 -16.83 -0.20 -0.42 16 6 C -0.17 -2.17 8.73 -37.50 -0.33 -2.50 16 7 C -0.22 -3.65 5.25 -103.35 -0.54 -4.19 16 8 C 0.60 11.76 7.35 -12.59 -0.09 11.67 16 9 O -0.54 -12.64 15.48 5.26 0.08 -12.56 16 10 N -0.59 -10.21 2.90 -174.36 -0.50 -10.71 16 11 C 0.11 1.50 5.93 -3.93 -0.02 1.48 16 12 C -0.13 -1.93 4.93 -26.83 -0.13 -2.07 16 13 C -0.14 -2.13 2.02 -90.58 -0.18 -2.31 16 14 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.46 7.91 2.69 37.16 0.10 8.01 16 16 F -0.15 -3.32 14.40 2.25 0.03 -3.29 16 17 F -0.20 -3.16 16.77 2.25 0.04 -3.12 16 18 F -0.19 -3.40 16.77 2.25 0.04 -3.36 16 19 C 0.16 3.08 2.45 -67.81 -0.17 2.91 16 20 H 0.07 1.35 7.71 -51.93 -0.40 0.95 16 21 N -0.71 -16.91 3.69 -53.31 -0.20 -17.11 16 22 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 26 Si 0.90 22.83 29.55 -169.99 -5.02 17.80 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 30 C 0.10 1.74 6.03 -3.71 -0.02 1.72 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.10 1.83 7.01 -51.93 -0.36 1.47 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 1.48 7.72 -52.49 -0.41 1.07 16 36 H 0.10 1.29 4.51 -51.93 -0.23 1.06 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 39 H 0.09 1.60 6.11 -51.93 -0.32 1.28 16 40 H 0.39 9.93 4.94 -40.82 -0.20 9.73 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 2.14 7.03 -51.93 -0.36 1.77 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -34.06 356.60 -6.68 -40.75 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.14 Total: 11.90 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.05 Total: 7.25 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.03 Total: -60.75 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 0.11 Total: -9.76 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.06 -6.68 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998257551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.953 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds