Wall clock time and date at job start Wed Apr 1 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34660 * 125.80203 * 2 1 4 4 H 0.97003 * 124.85023 * 359.97312 * 3 2 1 5 5 C 1.36443 * 110.29927 * 179.69606 * 3 2 1 6 6 C 1.34490 * 108.85666 * 0.27107 * 5 3 2 7 7 C 1.36768 * 125.80129 * 180.15272 * 2 1 3 8 8 C 1.47261 * 126.94284 * 0.03365 * 7 2 1 9 9 O 1.21620 * 119.99914 * 311.33225 * 8 7 2 10 10 N 1.34785 * 119.99915 * 131.33244 * 8 7 2 11 11 C 1.46923 * 120.62777 * 4.05723 * 10 8 7 12 12 C 1.52766 * 109.00158 * 233.58398 * 11 10 8 13 13 C 1.53037 * 109.38417 * 305.58518 * 12 11 10 14 14 H 1.09002 * 109.45502 * 301.23197 * 13 12 11 15 15 C 1.52997 * 109.46048 * 181.26260 * 13 12 11 16 16 F 1.39904 * 109.47343 * 299.93668 * 15 13 12 17 17 F 1.39900 * 109.47170 * 59.93760 * 15 13 12 18 18 F 1.39907 * 109.47420 * 179.97438 * 15 13 12 19 19 C 1.53047 * 109.53644 * 61.24747 * 13 12 11 20 20 H 1.08998 * 109.49844 * 178.68396 * 19 13 12 21 21 N 1.46498 * 109.49914 * 58.58406 * 19 13 12 22 22 C 1.36931 * 119.99948 * 155.16757 * 21 19 13 23 23 H 1.07995 * 120.00044 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99842 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00133 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47437 * 90.00041 * 26 24 22 28 28 H 1.48508 * 109.47266 * 209.99702 * 26 24 22 29 29 H 1.48494 * 109.47301 * 329.99768 * 26 24 22 30 30 C 1.46925 * 120.62815 * 184.33433 * 10 8 7 31 31 H 1.08997 * 109.47652 * 90.02027 * 1 2 3 32 32 H 1.09004 * 109.47315 * 210.02725 * 1 2 3 33 33 H 1.09001 * 109.47051 * 330.01723 * 1 2 3 34 34 H 1.08003 * 125.57563 * 180.26893 * 5 3 2 35 35 H 1.07997 * 126.83215 * 180.02562 * 6 5 3 36 36 H 1.08998 * 109.59104 * 353.41634 * 11 10 8 37 37 H 1.08999 * 109.58906 * 113.85022 * 11 10 8 38 38 H 1.09007 * 109.56284 * 185.55481 * 12 11 10 39 39 H 1.08995 * 109.39170 * 65.52119 * 12 11 10 40 40 H 0.96999 * 119.99856 * 335.16282 * 21 19 13 41 41 H 0.97007 * 120.00103 * 180.02562 * 25 24 22 42 42 H 1.09000 * 109.58803 * 246.15623 * 30 10 8 43 43 H 1.09003 * 109.58924 * 6.58107 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6095 0.7275 0.0068 6 6 3.6882 -0.6151 0.0053 7 6 2.3071 -1.1093 -0.0030 8 6 1.8702 -2.5156 -0.0074 9 8 1.0252 -2.8923 0.7820 10 7 2.4069 -3.3852 -0.8863 11 6 3.4910 -2.9673 -1.7856 12 6 3.0962 -3.2926 -3.2251 13 6 2.7292 -4.7747 -3.3287 14 1 3.5800 -5.3818 -3.0192 15 6 2.3639 -5.1094 -4.7762 16 9 1.2715 -4.3307 -5.1735 17 9 3.4562 -4.8389 -5.6074 18 9 2.0289 -6.4644 -4.8713 19 6 1.5340 -5.0707 -2.4197 20 1 1.2585 -6.1212 -2.5116 21 7 0.4002 -4.2308 -2.8137 22 6 -0.8787 -4.6314 -2.5329 23 1 -1.0516 -5.5667 -2.0214 24 6 -1.9531 -3.8358 -2.9067 25 7 -1.7424 -2.6961 -3.5305 26 14 -3.6978 -4.3826 -2.5243 27 1 -4.0980 -3.8648 -1.1912 28 1 -4.6211 -3.8514 -3.5591 29 1 -3.7616 -5.8661 -2.5185 30 6 1.9149 -4.7672 -0.9672 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3633 0.8901 0.5136 34 1 4.4497 1.4060 0.0124 35 1 4.5890 -1.2109 0.0098 36 1 3.6548 -1.8943 -1.6867 37 1 4.4049 -3.5037 -1.5303 38 1 3.9325 -3.0775 -3.8904 39 1 2.2382 -2.6844 -3.5113 40 1 0.5555 -3.3909 -3.2734 41 1 -2.4932 -2.1400 -3.7914 42 1 2.6976 -5.4533 -0.6437 43 1 1.0391 -4.8814 -0.3284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998257551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:27 Heat of formation + Delta-G solvation = -143.705621 kcal Electronic energy + Delta-G solvation = -32909.111357 eV Core-core repulsion = 28153.654678 eV Total energy + Delta-G solvation = -4755.456680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.90100 -48.43344 -48.30987 -42.15305 -40.66657 -38.65711 -35.84611 -34.24718 -32.86886 -32.47951 -31.90816 -30.28119 -28.35672 -27.06226 -25.88936 -24.54146 -24.01422 -22.89647 -21.56075 -20.78512 -19.81957 -19.22454 -19.04505 -18.86905 -18.53884 -18.12087 -17.10505 -16.82163 -16.30874 -16.18718 -15.81055 -15.47502 -15.35322 -15.17985 -15.03643 -14.80484 -14.58801 -14.50220 -14.48790 -14.42022 -14.30237 -14.13842 -13.73897 -13.61936 -13.50592 -13.49684 -13.35628 -13.03811 -12.85169 -12.73197 -12.48873 -12.28169 -12.07897 -11.90222 -11.64943 -11.52761 -11.03767 -10.74022 -9.64570 -9.50708 -9.01180 -8.82913 -7.88099 -5.13370 1.04513 1.42939 1.45609 1.51364 1.67393 1.95678 2.01818 2.45285 2.56619 2.61734 2.98991 3.11891 3.27154 3.45228 3.83773 3.87076 3.97115 3.99992 4.07055 4.14872 4.28822 4.34295 4.41979 4.49513 4.63581 4.68954 4.71852 4.73657 4.80904 4.85640 4.91349 5.04147 5.09959 5.13146 5.28920 5.31764 5.53955 5.78421 5.90917 6.10228 6.31957 6.65907 6.78669 7.41598 7.46787 8.13575 8.37581 9.34278 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.005873 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.367859 B = 4766.194014 C = 6743.671372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.073 3.927 3 N -0.540 5.540 4 H 0.430 0.570 5 C 0.007 3.993 6 C -0.186 4.186 7 C -0.251 4.251 8 C 0.586 3.414 9 O -0.599 6.599 10 N -0.592 5.592 11 C 0.111 3.889 12 C -0.128 4.128 13 C -0.126 4.126 14 H 0.155 0.845 15 C 0.452 3.548 16 F -0.185 7.185 17 F -0.186 7.186 18 F -0.194 7.194 19 C 0.157 3.843 20 H 0.068 0.932 21 N -0.717 5.717 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.065 4.065 25 N -0.957 5.957 26 Si 0.955 3.045 27 H -0.297 1.297 28 H -0.295 1.295 29 H -0.272 1.272 30 C 0.103 3.897 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.215 0.785 35 H 0.167 0.833 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.379 0.621 41 H 0.246 0.754 42 H 0.095 0.905 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.952 6.004 3.310 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 N -0.136 5.136 4 H 0.269 0.731 5 C -0.121 4.121 6 C -0.209 4.209 7 C -0.261 4.261 8 C 0.377 3.623 9 O -0.481 6.481 10 N -0.323 5.323 11 C -0.011 4.011 12 C -0.166 4.166 13 C -0.146 4.146 14 H 0.173 0.827 15 C 0.398 3.602 16 F -0.166 7.166 17 F -0.168 7.168 18 F -0.175 7.175 19 C 0.046 3.954 20 H 0.086 0.914 21 N -0.358 5.358 22 C -0.361 4.361 23 H 0.085 0.915 24 C -0.258 4.258 25 N -0.607 5.607 26 Si 0.786 3.214 27 H -0.225 1.225 28 H -0.222 1.222 29 H -0.197 1.197 30 C -0.022 4.022 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.232 0.768 35 H 0.185 0.815 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.065 0.935 40 H 0.215 0.785 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.341 5.814 3.703 19.594 hybrid contribution -2.063 0.131 -0.433 2.112 sum 16.279 5.945 3.269 17.636 Atomic orbital electron populations 1.20313 0.88593 1.03437 1.02351 1.20072 0.93258 0.86906 1.04273 1.41500 1.06195 1.08147 1.57806 0.73058 1.22397 0.86000 0.96334 1.07387 1.22193 0.94097 0.94537 1.10096 1.20207 0.95949 0.90901 1.19084 1.17949 0.79345 0.85450 0.79556 1.90693 1.35251 1.79883 1.42250 1.47786 1.36936 1.11104 1.36439 1.22010 0.89247 1.03558 0.86289 1.21878 1.02777 0.92363 0.99608 1.22781 1.02037 1.01967 0.87846 0.82718 1.20820 0.74300 0.73868 0.91198 1.93261 1.56113 1.74896 1.92374 1.93130 1.54513 1.93616 1.75523 1.93124 1.92813 1.34588 1.97003 1.20814 0.86637 0.95732 0.92183 0.91445 1.42516 1.00564 1.23702 1.69065 1.19428 0.84703 1.02816 1.29140 0.91491 1.25275 1.00661 0.97546 1.02273 1.69801 1.30019 1.13964 1.46962 0.85403 0.81695 0.77849 0.76425 1.22525 1.22209 1.19716 1.22207 0.99475 0.82484 0.98048 0.92211 0.92651 0.88692 0.76805 0.81538 0.87196 0.87416 0.86777 0.93522 0.78541 0.94550 0.88737 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 10.23 71.24 0.73 -2.29 16 2 C 0.07 2.21 7.17 41.78 0.30 2.51 16 3 N -0.54 -10.51 5.90 -182.72 -1.08 -11.59 16 4 H 0.43 5.30 8.96 -92.71 -0.83 4.47 16 5 C 0.01 0.11 11.89 83.12 0.99 1.10 16 6 C -0.19 -4.01 8.73 23.62 0.21 -3.80 16 7 C -0.25 -8.22 5.25 -19.04 -0.10 -8.32 16 8 C 0.59 23.66 7.35 86.61 0.64 24.30 16 9 O -0.60 -29.99 15.48 -4.09 -0.06 -30.05 16 10 N -0.59 -19.98 2.90 -823.79 -2.39 -22.37 16 11 C 0.11 2.60 5.93 86.22 0.51 3.11 16 12 C -0.13 -3.36 4.93 30.53 0.15 -3.21 16 13 C -0.13 -3.55 2.02 -10.77 -0.02 -3.58 16 14 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 15 C 0.45 15.02 2.69 71.98 0.19 15.21 16 16 F -0.18 -8.04 14.40 44.97 0.65 -7.39 16 17 F -0.19 -5.38 16.77 44.97 0.75 -4.62 16 18 F -0.19 -6.72 16.77 44.97 0.75 -5.97 16 19 C 0.16 5.82 2.45 45.07 0.11 5.93 16 20 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 21 N -0.72 -35.34 3.69 -322.57 -1.19 -36.53 16 22 C -0.23 -13.00 9.93 84.03 0.83 -12.17 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.96 -59.46 13.06 21.65 0.28 -59.18 16 26 Si 0.96 48.90 29.55 68.60 2.03 50.93 16 27 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 30 C 0.10 3.65 6.03 86.36 0.52 4.17 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.32 7.01 -2.39 -0.02 2.30 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.17 2.66 7.72 -2.91 -0.02 2.64 16 36 H 0.11 2.46 4.51 -2.39 -0.01 2.44 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 2.22 7.76 -2.38 -0.02 2.21 16 39 H 0.05 1.66 6.11 -2.39 -0.01 1.65 16 40 H 0.38 20.22 4.94 -92.71 -0.46 19.76 16 41 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 42 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.05 2.48 7.03 -2.39 -0.02 2.46 16 Total: -1.00 -82.54 356.60 5.08 -77.46 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.20 Total: 29.72 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 5.53 Total: 19.59 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -4.37 Total: -129.67 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.06 Total: -30.05 kcal Atomic # 9 Polarization: -20.14 SS G_CDS: 2.16 Total: -17.99 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -82.54 5.08 -77.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998257551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.242 kcal (2) G-P(sol) polarization free energy of solvation -82.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds