Wall clock time and date at job start Wed Apr 1 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39838 * 126.45809 * 2 1 4 4 C 1.35458 * 107.86325 * 180.02562 * 3 2 1 5 5 N 1.35530 * 108.87130 * 359.76929 * 4 3 2 6 6 H 0.96997 * 125.67710 * 180.26648 * 5 4 3 7 7 C 1.37653 * 108.64664 * 0.37354 * 5 4 3 8 8 C 1.46674 * 126.23503 * 179.88613 * 7 5 4 9 9 O 1.21690 * 120.00138 * 221.57189 * 8 7 5 10 10 N 1.34776 * 119.99643 * 41.57799 * 8 7 5 11 11 C 1.46926 * 120.63485 * 356.00241 * 10 8 7 12 12 C 1.53192 * 108.77553 * 126.40961 * 11 10 8 13 13 C 1.53040 * 109.33660 * 54.62744 * 12 11 10 14 14 H 1.08995 * 109.43923 * 58.67996 * 13 12 11 15 15 C 1.52994 * 109.48517 * 178.64357 * 13 12 11 16 16 F 1.39902 * 109.47480 * 180.02562 * 15 13 12 17 17 F 1.39904 * 109.47321 * 300.08381 * 15 13 12 18 18 F 1.39910 * 109.47420 * 60.08357 * 15 13 12 19 19 C 1.53043 * 109.53485 * 298.67648 * 13 12 11 20 20 H 1.09001 * 109.50065 * 301.35303 * 19 13 12 21 21 N 1.46507 * 109.49402 * 181.28773 * 19 13 12 22 22 C 1.36932 * 119.99729 * 155.06787 * 21 19 13 23 23 H 1.08004 * 120.00527 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00138 * 179.72234 * 22 21 19 25 25 N 1.31618 * 119.99446 * 0.27594 * 24 22 21 26 26 Si 1.86796 * 120.00340 * 180.27590 * 24 22 21 27 27 H 1.48506 * 109.46984 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47489 * 120.00004 * 26 24 22 29 29 H 1.48504 * 109.47125 * 240.00315 * 26 24 22 30 30 C 1.46931 * 120.62907 * 176.02468 * 10 8 7 31 31 H 1.09000 * 109.47234 * 269.96215 * 1 2 3 32 32 H 1.08999 * 109.46737 * 29.95713 * 1 2 3 33 33 H 1.08999 * 109.47123 * 149.95765 * 1 2 3 34 34 H 1.08002 * 126.06878 * 0.05770 * 3 2 1 35 35 H 1.07994 * 125.55857 * 180.02562 * 4 3 2 36 36 H 1.08992 * 109.58811 * 246.20143 * 11 10 8 37 37 H 1.09007 * 109.58263 * 6.48450 * 11 10 8 38 38 H 1.09005 * 109.49429 * 174.58994 * 12 11 10 39 39 H 1.08996 * 109.50131 * 294.65289 * 12 11 10 40 40 H 0.96999 * 119.99929 * 335.06104 * 21 19 13 41 41 H 0.96998 * 119.99739 * 180.02562 * 25 24 22 42 42 H 1.08995 * 109.58548 * 113.80161 * 30 10 8 43 43 H 1.08996 * 109.58690 * 353.37263 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6219 0.6928 -0.0006 5 7 3.6284 -0.6625 0.0042 6 1 4.4190 -1.2244 0.0086 7 6 2.3263 -1.1089 -0.0006 8 6 1.8898 -2.5092 -0.0001 9 8 0.9591 -2.8567 -0.7028 10 7 2.5197 -3.4111 0.7787 11 6 3.6992 -3.0265 1.5658 12 6 3.4617 -3.4107 3.0297 13 6 3.1085 -4.8975 3.1124 14 1 3.9205 -5.4874 2.6874 15 6 2.9038 -5.2927 4.5762 16 9 2.5815 -6.6520 4.6516 17 9 4.0803 -5.0508 5.2935 18 9 1.8610 -4.5363 5.1220 19 6 1.8213 -5.1621 2.3280 20 1 1.0144 -4.5543 2.7373 21 7 1.4673 -6.5799 2.4334 22 6 0.1648 -6.9735 2.2800 23 1 -0.6017 -6.2389 2.0818 24 6 -0.1698 -8.3175 2.3741 25 7 0.7641 -9.2127 2.6160 26 14 -1.9455 -8.8553 2.1572 27 1 -2.7949 -7.6653 1.8970 28 1 -2.0421 -9.7934 1.0101 29 1 -2.4114 -9.5346 3.3929 30 6 2.0401 -4.7977 0.8563 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 2.0137 2.1549 0.0009 35 1 4.4972 1.3252 -0.0003 36 1 4.5771 -3.5504 1.1883 37 1 3.8547 -1.9503 1.4890 38 1 4.3660 -3.2189 3.6074 39 1 2.6401 -2.8186 3.4326 40 1 2.1556 -7.2397 2.6116 41 1 0.5304 -10.1518 2.6814 42 1 2.7828 -5.4661 0.4209 43 1 1.0995 -4.8900 0.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998264284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:22 Heat of formation + Delta-G solvation = -117.791362 kcal Electronic energy + Delta-G solvation = -32115.068546 eV Core-core repulsion = 27360.735593 eV Total energy + Delta-G solvation = -4754.332953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.57252 -47.14160 -46.88595 -41.61916 -39.55245 -37.55496 -34.74887 -33.08537 -32.56362 -31.46888 -30.01485 -28.59238 -27.53616 -26.32516 -24.24334 -23.60485 -22.07660 -21.80272 -20.97560 -20.08424 -18.97131 -18.07823 -17.88089 -17.63620 -17.36780 -16.95682 -16.17308 -15.54905 -15.47666 -14.74292 -14.38812 -14.24955 -13.98472 -13.88706 -13.85737 -13.55796 -13.51233 -13.39761 -13.18487 -13.12267 -13.03173 -13.02768 -12.83856 -12.66583 -12.52240 -12.35271 -12.29807 -11.61430 -11.54011 -11.27923 -11.07753 -10.84794 -10.81464 -10.38914 -10.01396 -9.94532 -9.73561 -9.18102 -8.89101 -8.61516 -8.21610 -7.10447 -5.82442 -3.14699 1.52701 2.56017 2.84301 2.89653 3.18720 3.41989 3.43458 3.50097 3.52031 4.17382 4.23733 4.38434 4.51556 4.59756 4.74428 4.84601 4.90994 5.04226 5.11239 5.18467 5.21976 5.31580 5.34876 5.51902 5.62670 5.64510 5.70992 5.80773 5.81325 5.85674 5.95108 6.01082 6.05489 6.26491 6.43042 6.45157 6.64130 6.72087 6.84972 7.21270 7.43644 7.68049 8.20651 8.32634 9.46303 9.93144 10.29030 11.38957 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004070 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.718416 B = 6877.847935 C = 8503.160813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.088 4.088 3 C -0.206 4.206 4 C 0.011 3.989 5 N -0.542 5.542 6 H 0.417 0.583 7 C -0.045 4.045 8 C 0.586 3.414 9 O -0.521 6.521 10 N -0.607 5.607 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.142 4.142 14 H 0.111 0.889 15 C 0.458 3.542 16 F -0.154 7.154 17 F -0.199 7.199 18 F -0.186 7.186 19 C 0.172 3.828 20 H 0.066 0.934 21 N -0.714 5.714 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.002 4.002 25 N -0.925 5.925 26 Si 0.907 3.093 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.291 1.291 30 C 0.097 3.903 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.169 0.831 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.390 0.610 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 19.138 -1.453 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.231 4.231 4 C -0.124 4.124 5 N -0.141 5.141 6 H 0.257 0.743 7 C -0.157 4.157 8 C 0.373 3.627 9 O -0.396 6.396 10 N -0.341 5.341 11 C -0.023 4.023 12 C -0.167 4.167 13 C -0.162 4.162 14 H 0.129 0.871 15 C 0.403 3.597 16 F -0.135 7.135 17 F -0.181 7.181 18 F -0.167 7.167 19 C 0.060 3.940 20 H 0.084 0.916 21 N -0.356 5.356 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.199 4.199 25 N -0.572 5.572 26 Si 0.737 3.263 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.218 1.218 30 C -0.027 4.027 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.226 0.774 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.520 18.712 -1.810 21.543 hybrid contribution -0.095 -0.876 0.299 0.930 sum 10.425 17.836 -1.512 20.715 Atomic orbital electron populations 1.20336 0.89557 1.03185 1.02078 1.19874 0.95743 0.90752 1.03225 1.20762 0.91828 0.98642 1.11825 1.21947 0.99475 0.83022 1.07915 1.42316 1.07071 1.07223 1.57456 0.74335 1.20245 0.83797 0.93736 1.17964 1.17188 0.82704 0.82910 0.79870 1.90842 1.29014 1.78850 1.40904 1.48301 1.29579 1.11635 1.44573 1.21904 0.88426 1.01071 0.90902 1.21921 1.03537 0.94171 0.97106 1.22827 1.03923 0.98807 0.90684 0.87130 1.20388 0.73169 0.76203 0.89907 1.93322 1.92317 1.31241 1.96581 1.93116 1.49140 1.94403 1.81423 1.93138 1.59295 1.76349 1.87924 1.20499 0.91960 0.89566 0.91991 0.91564 1.42509 1.08029 1.00027 1.85021 1.19228 0.84726 0.91780 1.42189 0.90842 1.24736 0.97621 0.95806 1.01777 1.69677 1.31514 1.01000 1.54985 0.86131 0.84438 0.78434 0.77259 1.20339 1.21745 1.21787 1.22806 1.01608 0.78219 1.00070 0.91686 0.91713 0.90375 0.84162 0.81377 0.90814 0.89361 0.89546 0.89904 0.77350 0.93432 0.91429 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.19 36.01 0.37 -0.78 16 2 C -0.09 -1.09 6.20 -104.16 -0.65 -1.74 16 3 C -0.21 -2.00 10.76 -39.98 -0.43 -2.43 16 4 C 0.01 0.08 11.89 -16.91 -0.20 -0.12 16 5 N -0.54 -4.72 4.64 -9.39 -0.04 -4.76 16 6 H 0.42 2.53 7.41 -40.82 -0.30 2.23 16 7 C -0.04 -0.57 6.07 -81.98 -0.50 -1.07 16 8 C 0.59 9.14 7.43 -12.86 -0.10 9.05 16 9 O -0.52 -10.14 15.15 5.20 0.08 -10.07 16 10 N -0.61 -8.51 2.97 -174.31 -0.52 -9.03 16 11 C 0.10 1.00 5.78 -3.71 -0.02 0.97 16 12 C -0.13 -1.43 5.12 -26.61 -0.14 -1.57 16 13 C -0.14 -2.09 1.82 -90.58 -0.16 -2.25 16 14 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.46 7.78 2.68 37.15 0.10 7.88 16 16 F -0.15 -3.24 14.67 2.25 0.03 -3.21 16 17 F -0.20 -3.03 16.77 2.25 0.04 -3.00 16 18 F -0.19 -3.34 16.34 2.25 0.04 -3.30 16 19 C 0.17 3.19 2.24 -67.81 -0.15 3.03 16 20 H 0.07 1.34 7.78 -51.93 -0.40 0.94 16 21 N -0.71 -16.80 3.85 -53.30 -0.21 -17.00 16 22 C -0.25 -6.70 9.93 -15.06 -0.15 -6.85 16 23 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 24 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 25 N -0.92 -27.21 13.06 55.49 0.72 -26.49 16 26 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 C 0.10 1.68 6.01 -3.71 -0.02 1.66 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.12 6.77 -51.93 -0.35 0.77 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.72 4.35 -51.93 -0.23 0.49 16 38 H 0.09 0.77 7.77 -51.93 -0.40 0.37 16 39 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 40 H 0.39 9.74 6.54 -40.82 -0.27 9.48 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.10 2.09 7.03 -51.93 -0.36 1.72 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -33.02 358.39 -6.86 -39.87 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.23 Total: 8.59 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.15 Total: 5.63 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.04 Total: -57.28 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.11 Total: -9.50 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.02 -6.86 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998264284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.920 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds