Wall clock time and date at job start Wed Apr 1 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39838 * 126.45809 * 2 1 4 4 C 1.35458 * 107.86325 * 180.02562 * 3 2 1 5 5 N 1.35530 * 108.87130 * 359.76929 * 4 3 2 6 6 H 0.96997 * 125.67710 * 180.26648 * 5 4 3 7 7 C 1.37653 * 108.64664 * 0.37354 * 5 4 3 8 8 C 1.46674 * 126.23503 * 179.88613 * 7 5 4 9 9 O 1.21690 * 120.00138 * 221.57189 * 8 7 5 10 10 N 1.34776 * 119.99643 * 41.57799 * 8 7 5 11 11 C 1.46926 * 120.63485 * 356.00241 * 10 8 7 12 12 C 1.53192 * 108.77553 * 126.40961 * 11 10 8 13 13 C 1.53040 * 109.33660 * 54.62744 * 12 11 10 14 14 H 1.08995 * 109.43923 * 58.67996 * 13 12 11 15 15 C 1.52994 * 109.48517 * 178.64357 * 13 12 11 16 16 F 1.39902 * 109.47480 * 180.02562 * 15 13 12 17 17 F 1.39904 * 109.47321 * 300.08381 * 15 13 12 18 18 F 1.39910 * 109.47420 * 60.08357 * 15 13 12 19 19 C 1.53043 * 109.53485 * 298.67648 * 13 12 11 20 20 H 1.09001 * 109.50065 * 301.35303 * 19 13 12 21 21 N 1.46507 * 109.49402 * 181.28773 * 19 13 12 22 22 C 1.36932 * 119.99729 * 155.06787 * 21 19 13 23 23 H 1.08004 * 120.00527 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00138 * 179.72234 * 22 21 19 25 25 N 1.31618 * 119.99446 * 0.27594 * 24 22 21 26 26 Si 1.86796 * 120.00340 * 180.27590 * 24 22 21 27 27 H 1.48506 * 109.46984 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47489 * 120.00004 * 26 24 22 29 29 H 1.48504 * 109.47125 * 240.00315 * 26 24 22 30 30 C 1.46931 * 120.62907 * 176.02468 * 10 8 7 31 31 H 1.09000 * 109.47234 * 269.96215 * 1 2 3 32 32 H 1.08999 * 109.46737 * 29.95713 * 1 2 3 33 33 H 1.08999 * 109.47123 * 149.95765 * 1 2 3 34 34 H 1.08002 * 126.06878 * 0.05770 * 3 2 1 35 35 H 1.07994 * 125.55857 * 180.02562 * 4 3 2 36 36 H 1.08992 * 109.58811 * 246.20143 * 11 10 8 37 37 H 1.09007 * 109.58263 * 6.48450 * 11 10 8 38 38 H 1.09005 * 109.49429 * 174.58994 * 12 11 10 39 39 H 1.08996 * 109.50131 * 294.65289 * 12 11 10 40 40 H 0.96999 * 119.99929 * 335.06104 * 21 19 13 41 41 H 0.96998 * 119.99739 * 180.02562 * 25 24 22 42 42 H 1.08995 * 109.58548 * 113.80161 * 30 10 8 43 43 H 1.08996 * 109.58690 * 353.37263 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6219 0.6928 -0.0006 5 7 3.6284 -0.6625 0.0042 6 1 4.4190 -1.2244 0.0086 7 6 2.3263 -1.1089 -0.0006 8 6 1.8898 -2.5092 -0.0001 9 8 0.9591 -2.8567 -0.7028 10 7 2.5197 -3.4111 0.7787 11 6 3.6992 -3.0265 1.5658 12 6 3.4617 -3.4107 3.0297 13 6 3.1085 -4.8975 3.1124 14 1 3.9205 -5.4874 2.6874 15 6 2.9038 -5.2927 4.5762 16 9 2.5815 -6.6520 4.6516 17 9 4.0803 -5.0508 5.2935 18 9 1.8610 -4.5363 5.1220 19 6 1.8213 -5.1621 2.3280 20 1 1.0144 -4.5543 2.7373 21 7 1.4673 -6.5799 2.4334 22 6 0.1648 -6.9735 2.2800 23 1 -0.6017 -6.2389 2.0818 24 6 -0.1698 -8.3175 2.3741 25 7 0.7641 -9.2127 2.6160 26 14 -1.9455 -8.8553 2.1572 27 1 -2.7949 -7.6653 1.8970 28 1 -2.0421 -9.7934 1.0101 29 1 -2.4114 -9.5346 3.3929 30 6 2.0401 -4.7977 0.8563 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 2.0137 2.1549 0.0009 35 1 4.4972 1.3252 -0.0003 36 1 4.5771 -3.5504 1.1883 37 1 3.8547 -1.9503 1.4890 38 1 4.3660 -3.2189 3.6074 39 1 2.6401 -2.8186 3.4326 40 1 2.1556 -7.2397 2.6116 41 1 0.5304 -10.1518 2.6814 42 1 2.7828 -5.4661 0.4209 43 1 1.0995 -4.8900 0.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998264284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:21 Heat of formation + Delta-G solvation = -139.173486 kcal Electronic energy + Delta-G solvation = -32115.995745 eV Core-core repulsion = 27360.735593 eV Total energy + Delta-G solvation = -4755.260152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.97661 -48.49366 -48.39553 -42.46865 -40.68236 -38.86361 -36.34243 -34.50130 -33.47048 -33.09427 -31.08025 -29.97774 -28.64483 -27.44218 -26.05766 -24.73786 -23.54173 -22.89264 -21.80930 -21.32237 -19.84936 -19.43328 -19.28009 -19.10084 -18.85751 -18.29222 -17.34959 -16.94294 -16.51447 -16.28397 -15.82541 -15.54878 -15.25050 -15.16537 -15.11116 -14.90402 -14.84985 -14.66019 -14.55310 -14.52052 -14.29348 -14.16070 -13.97972 -13.84002 -13.73645 -13.51071 -13.14574 -13.10772 -12.94446 -12.69027 -12.50385 -12.34272 -12.19402 -12.13873 -11.78245 -11.65099 -11.21346 -11.04702 -9.93601 -9.63063 -9.09923 -9.01370 -7.97885 -5.28010 0.61321 1.43968 1.45317 1.54562 1.68689 1.81664 1.88761 2.04823 2.48872 2.52073 2.87944 3.05849 3.08201 3.35823 3.54347 3.62042 3.83193 3.98939 4.05613 4.12725 4.21656 4.25059 4.31187 4.35235 4.40941 4.47277 4.55847 4.69240 4.83708 4.84796 4.88213 4.98381 5.07199 5.11827 5.16422 5.35624 5.45250 5.49948 5.85628 6.00815 6.22348 6.32499 6.63739 7.04165 7.31675 7.96466 8.23520 9.24050 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004070 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.718416 B = 6877.847935 C = 8503.160813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.105 4.105 3 C -0.225 4.225 4 C 0.047 3.953 5 N -0.528 5.528 6 H 0.432 0.568 7 C -0.077 4.077 8 C 0.582 3.418 9 O -0.576 6.576 10 N -0.604 5.604 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.130 4.130 14 H 0.131 0.869 15 C 0.454 3.546 16 F -0.182 7.182 17 F -0.184 7.184 18 F -0.194 7.194 19 C 0.174 3.826 20 H 0.042 0.958 21 N -0.723 5.723 22 C -0.245 4.245 23 H 0.065 0.935 24 C -0.058 4.058 25 N -0.956 5.956 26 Si 0.962 3.038 27 H -0.274 1.274 28 H -0.290 1.290 29 H -0.292 1.292 30 C 0.113 3.887 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.159 0.841 35 H 0.218 0.782 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.383 0.617 41 H 0.252 0.748 42 H 0.075 0.925 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.129 22.170 -1.379 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.249 4.249 4 C -0.089 4.089 5 N -0.128 5.128 6 H 0.274 0.726 7 C -0.189 4.189 8 C 0.371 3.629 9 O -0.455 6.455 10 N -0.336 5.336 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.151 4.151 14 H 0.149 0.851 15 C 0.400 3.600 16 F -0.164 7.164 17 F -0.165 7.165 18 F -0.176 7.176 19 C 0.063 3.937 20 H 0.060 0.940 21 N -0.365 5.365 22 C -0.376 4.376 23 H 0.083 0.917 24 C -0.251 4.251 25 N -0.605 5.605 26 Si 0.792 3.208 27 H -0.198 1.198 28 H -0.217 1.217 29 H -0.219 1.219 30 C -0.013 4.013 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.177 0.823 35 H 0.235 0.765 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.218 0.782 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.573 21.794 -1.721 25.732 hybrid contribution -0.980 -1.644 0.304 1.938 sum 12.592 20.150 -1.417 23.804 Atomic orbital electron populations 1.20300 0.90519 1.02494 1.01846 1.20148 0.95775 0.92125 1.03388 1.21057 0.92290 0.98757 1.12754 1.22702 1.00296 0.82497 1.03408 1.42271 1.06009 1.07976 1.56562 0.72580 1.19738 0.85873 0.91799 1.21503 1.17676 0.81869 0.84211 0.79095 1.90807 1.31494 1.79955 1.43250 1.48276 1.30597 1.09934 1.44798 1.22279 0.87490 1.03168 0.89359 1.21987 1.04813 0.90693 0.98534 1.22795 1.01973 1.02004 0.88308 0.85108 1.20711 0.73277 0.74826 0.91188 1.93267 1.92662 1.33656 1.96785 1.93138 1.47988 1.94153 1.81248 1.93121 1.59949 1.76333 1.88198 1.20536 0.93451 0.86499 0.93213 0.93952 1.42541 1.06635 1.02030 1.85246 1.19431 0.86194 0.91678 1.40317 0.91655 1.25382 1.00855 0.96067 1.02838 1.69793 1.32922 1.00870 1.56916 0.85254 0.80812 0.77913 0.76852 1.19846 1.21732 1.21904 1.22223 1.00175 0.80709 0.98164 0.91725 0.89774 0.93622 0.82306 0.76548 0.87375 0.86811 0.85749 0.91022 0.78166 0.93905 0.90686 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 10.19 71.24 0.73 -1.62 16 2 C -0.11 -2.50 6.20 -19.56 -0.12 -2.62 16 3 C -0.23 -3.57 10.76 22.01 0.24 -3.33 16 4 C 0.05 0.47 11.89 83.48 0.99 1.46 16 5 N -0.53 -6.99 4.64 -183.62 -0.85 -7.84 16 6 H 0.43 3.04 7.41 -92.71 -0.69 2.35 16 7 C -0.08 -1.84 6.07 40.35 0.24 -1.59 16 8 C 0.58 18.38 7.43 86.45 0.64 19.02 16 9 O -0.58 -23.91 15.15 -4.32 -0.07 -23.98 16 10 N -0.60 -16.50 2.97 -823.62 -2.45 -18.95 16 11 C 0.10 1.59 5.78 86.36 0.50 2.09 16 12 C -0.12 -2.30 5.12 30.67 0.16 -2.15 16 13 C -0.13 -3.65 1.82 -10.77 -0.02 -3.67 16 14 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 15 C 0.45 15.04 2.68 71.98 0.19 15.23 16 16 F -0.18 -7.80 14.67 44.97 0.66 -7.14 16 17 F -0.18 -5.16 16.77 44.97 0.75 -4.41 16 18 F -0.19 -6.96 16.34 44.97 0.73 -6.22 16 19 C 0.17 6.56 2.24 45.07 0.10 6.66 16 20 H 0.04 1.80 7.78 -2.39 -0.02 1.78 16 21 N -0.72 -35.11 3.85 -322.55 -1.24 -36.35 16 22 C -0.24 -13.67 9.93 84.04 0.83 -12.84 16 23 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 25 N -0.96 -57.76 13.06 21.65 0.28 -57.48 16 26 Si 0.96 47.37 29.55 68.60 2.03 49.40 16 27 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 30 C 0.11 3.99 6.01 86.36 0.52 4.51 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.42 6.77 -2.39 -0.02 1.40 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.22 0.10 8.06 -2.91 -0.02 0.08 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 1.32 4.35 -2.38 -0.01 1.31 16 38 H 0.12 1.54 7.77 -2.38 -0.02 1.52 16 39 H 0.07 1.57 7.85 -2.39 -0.02 1.56 16 40 H 0.38 19.66 6.54 -92.71 -0.61 19.05 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.06 2.68 7.03 -2.39 -0.02 2.67 16 Total: -1.00 -78.06 358.39 5.11 -72.94 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.21 Total: 21.73 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.47 Total: 18.30 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.26 Total: -120.62 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 9 Polarization: -19.92 SS G_CDS: 2.15 Total: -17.77 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -78.06 5.11 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998264284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.230 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds