Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39832 * 126.45820 * 2 1 4 4 C 1.35453 * 107.86575 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.87062 * 359.76683 * 4 3 2 6 6 H 0.97002 * 125.68010 * 180.26876 * 5 4 3 7 7 C 1.37651 * 108.64187 * 0.37471 * 5 4 3 8 8 C 1.46684 * 126.23165 * 179.88761 * 7 5 4 9 9 O 1.21694 * 119.99732 * 76.28160 * 8 7 5 10 10 N 1.34775 * 119.99909 * 256.28333 * 8 7 5 11 11 C 1.46922 * 120.63090 * 355.11600 * 10 8 7 12 12 C 1.53190 * 108.77558 * 126.37360 * 11 10 8 13 13 C 1.53043 * 109.34205 * 54.61527 * 12 11 10 14 14 H 1.08998 * 109.42841 * 58.68842 * 13 12 11 15 15 C 1.52996 * 109.48390 * 178.64588 * 13 12 11 16 16 F 1.39904 * 109.46842 * 180.08638 * 15 13 12 17 17 F 1.39903 * 109.47757 * 300.08474 * 15 13 12 18 18 F 1.39902 * 109.47265 * 60.08628 * 15 13 12 19 19 C 1.53041 * 109.53875 * 298.68357 * 13 12 11 20 20 H 1.08993 * 109.49612 * 181.28131 * 19 13 12 21 21 N 1.46495 * 109.49537 * 301.35089 * 19 13 12 22 22 C 1.36942 * 119.99539 * 204.93616 * 21 19 13 23 23 H 1.07997 * 120.00376 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00008 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00082 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99691 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47365 * 90.00567 * 26 24 22 28 28 H 1.48510 * 109.47026 * 210.00302 * 26 24 22 29 29 H 1.48495 * 109.47374 * 330.00215 * 26 24 22 30 30 C 1.46925 * 120.62762 * 175.09341 * 10 8 7 31 31 H 1.09005 * 109.47149 * 270.04129 * 1 2 3 32 32 H 1.09000 * 109.47280 * 30.03747 * 1 2 3 33 33 H 1.08997 * 109.47492 * 150.04468 * 1 2 3 34 34 H 1.07998 * 126.07155 * 359.97438 * 3 2 1 35 35 H 1.07996 * 125.56534 * 179.97438 * 4 3 2 36 36 H 1.09006 * 109.58492 * 246.15313 * 11 10 8 37 37 H 1.08998 * 109.59241 * 6.57964 * 11 10 8 38 38 H 1.09002 * 109.49856 * 174.58619 * 12 11 10 39 39 H 1.08999 * 109.49749 * 294.67528 * 12 11 10 40 40 H 0.96998 * 120.00744 * 24.93372 * 21 19 13 41 41 H 0.97002 * 120.00058 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.59021 * 113.84199 * 30 10 8 43 43 H 1.08995 * 109.70552 * 353.48423 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6625 0.0062 6 1 4.4190 -1.2245 0.0114 7 6 2.3262 -1.1089 0.0007 8 6 1.8897 -2.5093 0.0017 9 8 1.9422 -3.1622 1.0273 10 7 1.4306 -3.0728 -1.1333 11 6 1.2608 -2.2701 -2.3521 12 6 2.0173 -2.9483 -3.4986 13 6 1.5449 -4.3981 -3.6299 14 1 0.4711 -4.4141 -3.8159 15 6 2.2741 -5.0687 -4.7958 16 9 1.8407 -6.3934 -4.9168 17 9 1.9959 -4.3771 -5.9797 18 9 3.6525 -5.0490 -4.5571 19 6 1.8495 -5.1549 -2.3350 20 1 1.5336 -6.1930 -2.4375 21 7 3.2889 -5.1059 -2.0671 22 6 3.8775 -6.0816 -1.3075 23 1 3.2805 -6.8869 -0.9057 24 6 5.2414 -6.0350 -1.0532 25 7 5.8070 -6.9724 -0.3227 26 14 6.2738 -4.6417 -1.7476 27 1 6.3064 -3.5183 -0.7769 28 1 7.6567 -5.1247 -1.9923 29 1 5.6794 -4.1745 -3.0257 30 6 1.0910 -4.5016 -1.1753 31 1 -0.3634 0.0007 1.0277 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3634 -0.8903 -0.5131 34 1 2.0137 2.1548 -0.0004 35 1 4.4972 1.3252 0.0003 36 1 0.2017 -2.2044 -2.6016 37 1 1.6628 -1.2700 -2.1900 38 1 1.8208 -2.4159 -4.4292 39 1 3.0867 -2.9321 -3.2886 40 1 3.8251 -4.3825 -2.4277 41 1 6.7601 -6.9400 -0.1453 42 1 0.0182 -4.6179 -1.3289 43 1 1.3793 -4.9757 -0.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998264286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = -119.408772 kcal Electronic energy + Delta-G solvation = -33039.605931 eV Core-core repulsion = 28285.202842 eV Total energy + Delta-G solvation = -4754.403089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.74004 -47.28894 -47.10133 -41.35029 -39.59031 -37.52179 -34.46768 -32.94715 -32.58155 -31.45243 -29.94809 -29.21251 -27.45623 -26.39388 -24.02289 -23.52233 -22.51013 -21.76840 -20.63221 -19.51912 -18.80306 -18.31778 -18.05122 -17.89871 -17.51744 -17.04646 -16.14946 -15.52682 -15.09207 -14.72523 -14.63581 -14.17758 -14.08774 -13.99819 -13.78010 -13.63210 -13.48731 -13.39583 -13.31054 -13.28705 -13.07990 -12.99434 -12.80216 -12.73912 -12.53576 -12.50869 -12.22568 -11.82943 -11.54703 -11.34823 -11.07109 -11.06727 -10.85883 -10.48547 -10.21763 -9.76747 -9.63862 -9.18587 -8.77929 -8.45741 -8.04986 -7.35376 -5.82018 -3.18925 1.96395 2.50484 2.80251 3.04173 3.22708 3.26142 3.31066 3.36081 3.60287 4.05777 4.16722 4.33220 4.51818 4.67031 4.79367 4.96957 5.02375 5.05869 5.09367 5.11508 5.22559 5.30578 5.36012 5.52017 5.52572 5.64182 5.68349 5.68743 5.76529 5.85827 5.96458 6.00710 6.09527 6.16586 6.25007 6.43084 6.73530 6.85134 6.99749 7.44720 7.55515 7.88704 8.34265 8.37767 9.10591 9.82970 9.98951 11.35995 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.005666 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.246306 B = 4940.734496 C = 6208.090448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.003 3.997 5 N -0.527 5.527 6 H 0.422 0.578 7 C -0.026 4.026 8 C 0.590 3.410 9 O -0.517 6.517 10 N -0.590 5.590 11 C 0.114 3.886 12 C -0.135 4.135 13 C -0.142 4.142 14 H 0.115 0.885 15 C 0.457 3.543 16 F -0.183 7.183 17 F -0.196 7.196 18 F -0.164 7.164 19 C 0.170 3.830 20 H 0.084 0.916 21 N -0.736 5.736 22 C -0.242 4.242 23 H 0.093 0.907 24 C 0.014 3.986 25 N -0.927 5.927 26 Si 0.874 3.126 27 H -0.290 1.290 28 H -0.289 1.289 29 H -0.272 1.272 30 C 0.097 3.903 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 15.282 -7.040 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C -0.226 4.226 4 C -0.131 4.131 5 N -0.121 5.121 6 H 0.259 0.741 7 C -0.142 4.142 8 C 0.375 3.625 9 O -0.391 6.391 10 N -0.323 5.323 11 C -0.009 4.009 12 C -0.173 4.173 13 C -0.163 4.163 14 H 0.133 0.867 15 C 0.403 3.597 16 F -0.164 7.164 17 F -0.178 7.178 18 F -0.146 7.146 19 C 0.059 3.941 20 H 0.102 0.898 21 N -0.380 5.380 22 C -0.371 4.371 23 H 0.111 0.889 24 C -0.183 4.183 25 N -0.574 5.574 26 Si 0.704 3.296 27 H -0.218 1.218 28 H -0.216 1.216 29 H -0.198 1.198 30 C -0.028 4.028 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.090 14.547 -6.359 19.365 hybrid contribution 1.603 0.670 -0.728 1.884 sum -9.487 15.217 -7.087 19.282 Atomic orbital electron populations 1.20197 0.89913 1.01998 1.01925 1.19740 0.95240 0.90976 1.07625 1.20626 0.91706 0.98350 1.11964 1.21899 0.99491 0.82805 1.08933 1.41912 1.07151 1.07213 1.55801 0.74053 1.20084 0.84525 0.93751 1.15821 1.17085 0.77615 0.84216 0.83543 1.90871 1.53761 1.62799 1.31640 1.47800 1.64838 1.10077 1.09624 1.21662 1.00154 0.95406 0.83699 1.21969 1.02164 0.93309 0.99855 1.22820 1.01586 0.97384 0.94503 0.86687 1.20455 0.79015 0.77015 0.83262 1.93163 1.89560 1.37363 1.96319 1.93128 1.93690 1.79502 1.51456 1.93263 1.31194 1.96147 1.93949 1.20584 0.87109 0.97625 0.88812 0.89793 1.42816 1.02008 1.30287 1.62867 1.18981 0.92040 1.02774 1.23323 0.88899 1.24583 0.96406 0.97648 0.99626 1.69677 1.10920 1.34366 1.42479 0.86716 0.80910 0.83078 0.78854 1.21768 1.21577 1.19802 1.22499 0.97654 0.79362 1.03281 0.91770 0.91574 0.92178 0.84362 0.81572 0.90809 0.88766 0.89632 0.90273 0.80088 0.93035 0.92072 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.20 36.00 0.37 -0.49 16 2 C -0.13 -1.63 5.46 -104.16 -0.57 -2.20 16 3 C -0.20 -2.26 10.76 -39.98 -0.43 -2.69 16 4 C 0.00 0.04 11.89 -16.91 -0.20 -0.16 16 5 N -0.53 -7.30 6.10 -9.39 -0.06 -7.36 16 6 H 0.42 5.91 8.96 -40.82 -0.37 5.55 16 7 C -0.03 -0.40 5.21 -81.98 -0.43 -0.82 16 8 C 0.59 10.50 7.19 -12.85 -0.09 10.41 16 9 O -0.52 -11.54 16.55 5.19 0.09 -11.46 16 10 N -0.59 -8.93 2.89 -174.31 -0.50 -9.43 16 11 C 0.11 1.30 5.95 -3.71 -0.02 1.28 16 12 C -0.13 -1.66 4.95 -26.61 -0.13 -1.79 16 13 C -0.14 -1.91 2.01 -90.58 -0.18 -2.09 16 14 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.46 7.14 2.69 37.16 0.10 7.24 16 16 F -0.18 -3.02 16.77 2.25 0.04 -2.98 16 17 F -0.20 -2.77 16.77 2.25 0.04 -2.73 16 18 F -0.16 -3.18 14.40 2.25 0.03 -3.15 16 19 C 0.17 2.88 2.45 -67.81 -0.17 2.72 16 20 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 21 N -0.74 -16.09 3.49 -53.31 -0.19 -16.28 16 22 C -0.24 -6.55 10.41 -15.05 -0.16 -6.71 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 24 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 25 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 26 Si 0.87 21.83 27.73 -169.99 -4.71 17.12 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 29 H -0.27 -6.41 6.52 56.52 0.37 -6.05 16 30 C 0.10 1.54 6.02 -3.71 -0.02 1.52 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.06 5.79 -51.93 -0.30 0.76 16 38 H 0.09 0.85 7.77 -51.93 -0.40 0.44 16 39 H 0.08 1.20 6.11 -51.93 -0.32 0.88 16 40 H 0.36 8.02 2.81 -40.82 -0.11 7.90 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.11 2.11 7.04 -51.93 -0.37 1.75 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -34.33 357.06 -6.35 -40.69 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.21 Total: 11.92 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.03 Total: 6.51 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.03 Total: -61.30 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.11 Total: -8.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.33 -6.35 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998264286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.721 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds