Wall clock time and date at job start Wed Apr 1 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39832 * 126.45820 * 2 1 4 4 C 1.35453 * 107.86575 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.87062 * 359.76683 * 4 3 2 6 6 H 0.97002 * 125.68010 * 180.26876 * 5 4 3 7 7 C 1.37651 * 108.64187 * 0.37471 * 5 4 3 8 8 C 1.46684 * 126.23165 * 179.88761 * 7 5 4 9 9 O 1.21694 * 119.99732 * 76.28160 * 8 7 5 10 10 N 1.34775 * 119.99909 * 256.28333 * 8 7 5 11 11 C 1.46922 * 120.63090 * 355.11600 * 10 8 7 12 12 C 1.53190 * 108.77558 * 126.37360 * 11 10 8 13 13 C 1.53043 * 109.34205 * 54.61527 * 12 11 10 14 14 H 1.08998 * 109.42841 * 58.68842 * 13 12 11 15 15 C 1.52996 * 109.48390 * 178.64588 * 13 12 11 16 16 F 1.39904 * 109.46842 * 180.08638 * 15 13 12 17 17 F 1.39903 * 109.47757 * 300.08474 * 15 13 12 18 18 F 1.39902 * 109.47265 * 60.08628 * 15 13 12 19 19 C 1.53041 * 109.53875 * 298.68357 * 13 12 11 20 20 H 1.08993 * 109.49612 * 181.28131 * 19 13 12 21 21 N 1.46495 * 109.49537 * 301.35089 * 19 13 12 22 22 C 1.36942 * 119.99539 * 204.93616 * 21 19 13 23 23 H 1.07997 * 120.00376 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00008 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00082 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99691 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47365 * 90.00567 * 26 24 22 28 28 H 1.48510 * 109.47026 * 210.00302 * 26 24 22 29 29 H 1.48495 * 109.47374 * 330.00215 * 26 24 22 30 30 C 1.46925 * 120.62762 * 175.09341 * 10 8 7 31 31 H 1.09005 * 109.47149 * 270.04129 * 1 2 3 32 32 H 1.09000 * 109.47280 * 30.03747 * 1 2 3 33 33 H 1.08997 * 109.47492 * 150.04468 * 1 2 3 34 34 H 1.07998 * 126.07155 * 359.97438 * 3 2 1 35 35 H 1.07996 * 125.56534 * 179.97438 * 4 3 2 36 36 H 1.09006 * 109.58492 * 246.15313 * 11 10 8 37 37 H 1.08998 * 109.59241 * 6.57964 * 11 10 8 38 38 H 1.09002 * 109.49856 * 174.58619 * 12 11 10 39 39 H 1.08999 * 109.49749 * 294.67528 * 12 11 10 40 40 H 0.96998 * 120.00744 * 24.93372 * 21 19 13 41 41 H 0.97002 * 120.00058 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.59021 * 113.84199 * 30 10 8 43 43 H 1.08995 * 109.70552 * 353.48423 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6625 0.0062 6 1 4.4190 -1.2245 0.0114 7 6 2.3262 -1.1089 0.0007 8 6 1.8897 -2.5093 0.0017 9 8 1.9422 -3.1622 1.0273 10 7 1.4306 -3.0728 -1.1333 11 6 1.2608 -2.2701 -2.3521 12 6 2.0173 -2.9483 -3.4986 13 6 1.5449 -4.3981 -3.6299 14 1 0.4711 -4.4141 -3.8159 15 6 2.2741 -5.0687 -4.7958 16 9 1.8407 -6.3934 -4.9168 17 9 1.9959 -4.3771 -5.9797 18 9 3.6525 -5.0490 -4.5571 19 6 1.8495 -5.1549 -2.3350 20 1 1.5336 -6.1930 -2.4375 21 7 3.2889 -5.1059 -2.0671 22 6 3.8775 -6.0816 -1.3075 23 1 3.2805 -6.8869 -0.9057 24 6 5.2414 -6.0350 -1.0532 25 7 5.8070 -6.9724 -0.3227 26 14 6.2738 -4.6417 -1.7476 27 1 6.3064 -3.5183 -0.7769 28 1 7.6567 -5.1247 -1.9923 29 1 5.6794 -4.1745 -3.0257 30 6 1.0910 -4.5016 -1.1753 31 1 -0.3634 0.0007 1.0277 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3634 -0.8903 -0.5131 34 1 2.0137 2.1548 -0.0004 35 1 4.4972 1.3252 0.0003 36 1 0.2017 -2.2044 -2.6016 37 1 1.6628 -1.2700 -2.1900 38 1 1.8208 -2.4159 -4.4292 39 1 3.0867 -2.9321 -3.2886 40 1 3.8251 -4.3825 -2.4277 41 1 6.7601 -6.9400 -0.1453 42 1 0.0182 -4.6179 -1.3289 43 1 1.3793 -4.9757 -0.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998264286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:24 Heat of formation + Delta-G solvation = -142.978892 kcal Electronic energy + Delta-G solvation = -33040.628008 eV Core-core repulsion = 28285.202842 eV Total energy + Delta-G solvation = -4755.425166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.00086 -48.50008 -48.45272 -42.35441 -40.78841 -38.90175 -36.07904 -34.44365 -33.50854 -33.12600 -31.28670 -30.40777 -28.53780 -27.46336 -25.75824 -24.64380 -23.97206 -22.89002 -21.58968 -20.75909 -20.16509 -19.72799 -19.27521 -19.17778 -18.91563 -18.24961 -17.47303 -16.79500 -16.53018 -16.24283 -16.00134 -15.54839 -15.31852 -15.17174 -14.98229 -14.89324 -14.79164 -14.64262 -14.62728 -14.50261 -14.33362 -14.27466 -14.05008 -13.81870 -13.75868 -13.52880 -13.30778 -13.11139 -13.01712 -12.86840 -12.41189 -12.35436 -12.19139 -12.02138 -11.82675 -11.67594 -11.22890 -11.04198 -9.87246 -9.67279 -9.23839 -9.01070 -8.05742 -5.37639 0.95993 1.20055 1.27886 1.30527 1.34695 1.84577 1.94031 2.10785 2.40787 2.57132 2.85832 2.99233 3.13369 3.26589 3.50099 3.60563 3.75296 3.85870 3.99350 4.19479 4.23115 4.28255 4.31110 4.44839 4.53697 4.59930 4.66191 4.71940 4.79122 4.87403 4.93939 5.02629 5.08190 5.12415 5.23241 5.43945 5.53171 5.72240 5.94806 6.09017 6.16469 6.33908 6.50874 7.03408 7.10353 7.76758 7.93707 9.16074 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.005666 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.246306 B = 4940.734496 C = 6208.090448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.117 4.117 3 C -0.207 4.207 4 C 0.014 3.986 5 N -0.540 5.540 6 H 0.415 0.585 7 C -0.070 4.070 8 C 0.585 3.415 9 O -0.583 6.583 10 N -0.585 5.585 11 C 0.114 3.886 12 C -0.131 4.131 13 C -0.130 4.130 14 H 0.165 0.835 15 C 0.452 3.548 16 F -0.191 7.191 17 F -0.183 7.183 18 F -0.191 7.191 19 C 0.162 3.838 20 H 0.076 0.924 21 N -0.738 5.738 22 C -0.214 4.214 23 H 0.059 0.941 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.937 3.063 27 H -0.281 1.281 28 H -0.299 1.299 29 H -0.249 1.249 30 C 0.103 3.897 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.167 0.833 35 H 0.200 0.800 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.048 0.952 40 H 0.366 0.634 41 H 0.254 0.746 42 H 0.107 0.893 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 19.272 -9.556 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C -0.231 4.231 4 C -0.120 4.120 5 N -0.134 5.134 6 H 0.252 0.748 7 C -0.184 4.184 8 C 0.372 3.628 9 O -0.462 6.462 10 N -0.316 5.316 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.149 4.149 14 H 0.182 0.818 15 C 0.398 3.602 16 F -0.173 7.173 17 F -0.164 7.164 18 F -0.173 7.173 19 C 0.052 3.948 20 H 0.094 0.906 21 N -0.382 5.382 22 C -0.345 4.345 23 H 0.077 0.923 24 C -0.252 4.252 25 N -0.634 5.634 26 Si 0.765 3.235 27 H -0.208 1.208 28 H -0.226 1.226 29 H -0.174 1.174 30 C -0.022 4.022 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.185 0.815 35 H 0.217 0.783 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.067 0.933 40 H 0.202 0.798 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.329 18.591 -8.958 24.567 hybrid contribution 2.134 -0.576 0.019 2.211 sum -11.195 18.014 -8.940 23.016 Atomic orbital electron populations 1.20293 0.88354 1.03425 1.02064 1.20131 0.96366 0.90555 1.05447 1.21008 0.91321 0.99228 1.11563 1.22583 1.01033 0.81842 1.06535 1.42051 1.06548 1.08223 1.56584 0.74819 1.19902 0.85704 0.92810 1.19950 1.17592 0.76747 0.85199 0.83215 1.90828 1.56557 1.64741 1.34098 1.47925 1.63520 1.09780 1.10391 1.21990 1.02660 0.94815 0.81318 1.22018 1.00392 0.92709 1.01841 1.22850 1.04152 0.97078 0.90860 0.81753 1.20798 0.77941 0.76958 0.84455 1.93151 1.89456 1.38235 1.96434 1.93151 1.93428 1.79038 1.50788 1.93207 1.33582 1.96260 1.94207 1.20808 0.84239 0.98341 0.91384 0.90608 1.42755 1.04329 1.29017 1.62102 1.18936 0.91654 1.02226 1.21677 0.92328 1.25347 0.98037 1.00649 1.01214 1.69868 1.10855 1.37184 1.45454 0.85675 0.78454 0.80148 0.79211 1.20755 1.22607 1.17385 1.22268 0.99902 0.79840 1.00140 0.92261 0.88753 0.92087 0.81523 0.78305 0.86486 0.88089 0.85959 0.93288 0.79847 0.93700 0.87487 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.20 71.24 0.73 -0.73 16 2 C -0.12 -2.65 5.46 -19.57 -0.11 -2.76 16 3 C -0.21 -3.86 10.76 22.01 0.24 -3.63 16 4 C 0.01 0.27 11.89 83.48 0.99 1.27 16 5 N -0.54 -14.33 6.10 -183.62 -1.12 -15.45 16 6 H 0.42 11.59 8.96 -92.71 -0.83 10.76 16 7 C -0.07 -2.04 5.21 40.35 0.21 -1.83 16 8 C 0.58 20.93 7.19 86.45 0.62 21.56 16 9 O -0.58 -27.49 16.55 -4.33 -0.07 -27.56 16 10 N -0.58 -16.78 2.89 -823.61 -2.38 -19.16 16 11 C 0.11 2.12 5.95 86.36 0.51 2.63 16 12 C -0.13 -2.68 4.95 30.67 0.15 -2.53 16 13 C -0.13 -3.00 2.01 -10.77 -0.02 -3.02 16 14 H 0.16 2.29 8.14 -2.39 -0.02 2.27 16 15 C 0.45 12.96 2.69 71.98 0.19 13.15 16 16 F -0.19 -6.00 16.77 44.97 0.75 -5.25 16 17 F -0.18 -4.47 16.77 44.97 0.75 -3.71 16 18 F -0.19 -7.13 14.40 44.97 0.65 -6.49 16 19 C 0.16 5.33 2.45 45.07 0.11 5.44 16 20 H 0.08 2.63 7.70 -2.39 -0.02 2.62 16 21 N -0.74 -32.60 3.49 -322.58 -1.12 -33.73 16 22 C -0.21 -12.13 10.41 84.03 0.88 -11.25 16 23 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 24 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.98 -64.87 13.97 21.65 0.30 -64.57 16 26 Si 0.94 46.54 27.73 68.60 1.90 48.44 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 29 H -0.25 -11.27 6.52 99.48 0.65 -10.62 16 30 C 0.10 3.21 6.02 86.36 0.52 3.73 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.04 7.58 -2.39 -0.02 1.02 16 34 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.10 1.86 5.79 -2.39 -0.01 1.85 16 38 H 0.12 1.70 7.77 -2.39 -0.02 1.68 16 39 H 0.05 1.34 6.11 -2.39 -0.01 1.32 16 40 H 0.37 15.98 2.81 -92.71 -0.26 15.72 16 41 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 42 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.43 7.04 -2.39 -0.02 2.41 16 Total: -1.00 -82.79 357.06 5.09 -77.71 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.07 Total: 30.97 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.49 Total: 18.79 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -4.32 Total: -132.91 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.07 Total: -27.56 kcal Atomic # 9 Polarization: -17.60 SS G_CDS: 2.16 Total: -15.44 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.90 Total: 48.44 kcal Total: -82.79 5.09 -77.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998264286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.273 kcal (2) G-P(sol) polarization free energy of solvation -82.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds