Wall clock time and date at job start Wed Apr 1 2020 03:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34488 * 126.83367 * 2 1 4 4 N 1.36451 * 108.85412 * 180.02562 * 3 2 1 5 5 H 0.96998 * 124.84398 * 180.02562 * 4 3 2 6 6 C 1.34656 * 110.29853 * 359.72512 * 4 3 2 7 7 C 1.36764 * 108.39762 * 0.44555 * 6 4 3 8 8 C 1.47267 * 126.93977 * 179.83271 * 7 6 4 9 9 O 1.21627 * 119.99714 * 229.65900 * 8 7 6 10 10 N 1.34773 * 119.99881 * 49.66971 * 8 7 6 11 11 C 1.46931 * 120.63171 * 355.72131 * 10 8 7 12 12 C 1.53191 * 108.77183 * 126.37387 * 11 10 8 13 13 C 1.53042 * 109.34008 * 54.62223 * 12 11 10 14 14 H 1.08997 * 109.42831 * 58.68717 * 13 12 11 15 15 C 1.52993 * 109.48550 * 178.64128 * 13 12 11 16 16 F 1.39908 * 109.46973 * 180.08438 * 15 13 12 17 17 F 1.39900 * 109.47707 * 300.08464 * 15 13 12 18 18 F 1.39904 * 109.47239 * 60.09122 * 15 13 12 19 19 C 1.53034 * 109.54052 * 298.68372 * 13 12 11 20 20 H 1.08992 * 109.50124 * 181.28258 * 19 13 12 21 21 N 1.46508 * 109.49481 * 301.34794 * 19 13 12 22 22 C 1.36937 * 119.99806 * 204.93341 * 21 19 13 23 23 H 1.08004 * 119.99991 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00012 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00025 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00169 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46793 * 60.00270 * 26 24 22 28 28 H 1.48500 * 109.47139 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47177 * 300.00565 * 26 24 22 30 30 C 1.46923 * 120.63111 * 175.70802 * 10 8 7 31 31 H 1.08998 * 109.47382 * 269.96010 * 1 2 3 32 32 H 1.08995 * 109.47350 * 29.96341 * 1 2 3 33 33 H 1.09003 * 109.47149 * 149.95861 * 1 2 3 34 34 H 1.08000 * 125.56994 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.79592 * 180.30074 * 6 4 3 36 36 H 1.08997 * 109.59023 * 246.16285 * 11 10 8 37 37 H 1.09004 * 109.58191 * 6.58886 * 11 10 8 38 38 H 1.08997 * 109.49437 * 174.58791 * 12 11 10 39 39 H 1.09002 * 109.50185 * 294.68372 * 12 11 10 40 40 H 0.96997 * 119.99727 * 24.93302 * 21 19 13 41 41 H 0.97000 * 120.00430 * 179.97438 * 25 24 22 42 42 H 1.09000 * 109.58691 * 113.83294 * 30 10 8 43 43 H 1.09000 * 109.58875 * 353.41240 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6656 -0.6902 0.0051 7 6 2.3864 -1.1741 -0.0006 8 6 1.9750 -2.5881 -0.0008 9 8 1.1543 -2.9825 -0.8072 10 7 2.5077 -3.4450 0.8927 11 6 3.5673 -3.0062 1.8111 12 6 3.1425 -3.3331 3.2461 13 6 2.8002 -4.8214 3.3468 14 1 3.6689 -5.4135 3.0591 15 6 2.4080 -5.1586 4.7866 16 9 2.0970 -6.5195 4.8786 17 9 3.4757 -4.8654 5.6418 18 9 1.2925 -4.3994 5.1561 19 6 1.6321 -5.1423 2.4116 20 1 1.3740 -6.1974 2.5007 21 7 0.4738 -4.3230 2.7771 22 6 -0.7907 -4.7495 2.4701 23 1 -0.9342 -5.6900 1.9589 24 6 -1.8882 -3.9735 2.8168 25 7 -1.7134 -2.8276 3.4403 26 14 -3.6133 -4.5556 2.3987 27 1 -3.8707 -5.8584 3.0633 28 1 -4.6020 -3.5539 2.8721 29 1 -3.7383 -4.7170 0.9279 30 6 2.0397 -4.8357 0.9670 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 1.9867 2.1059 0.0004 35 1 4.5664 -1.2859 0.0106 36 1 4.4943 -3.5293 1.5762 37 1 3.7163 -1.9311 1.7100 38 1 3.9595 -3.1007 3.9292 39 1 2.2669 -2.7402 3.5104 40 1 0.6027 -3.4785 3.2365 41 1 -2.4802 -2.2852 3.6823 42 1 2.8421 -5.5080 0.6633 43 1 1.1808 -4.9680 0.3091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998314668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:08 Heat of formation + Delta-G solvation = -117.958886 kcal Electronic energy + Delta-G solvation = -32875.194622 eV Core-core repulsion = 28120.854405 eV Total energy + Delta-G solvation = -4754.340217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.49867 -47.08280 -46.80415 -41.09233 -39.33837 -37.16452 -34.13327 -32.64364 -32.21647 -31.20965 -29.80723 -28.56202 -26.68133 -26.25299 -24.04054 -23.37409 -22.54340 -21.78892 -20.00546 -19.26312 -18.44911 -18.00064 -17.78008 -17.59466 -17.02782 -16.88681 -15.86829 -15.38382 -14.86678 -14.49772 -14.29497 -14.04972 -13.94504 -13.73240 -13.59751 -13.48133 -13.38149 -13.23773 -12.99489 -12.95987 -12.88225 -12.73805 -12.46523 -12.30335 -12.25681 -12.08267 -11.88211 -11.48508 -11.08299 -10.96020 -10.78728 -10.75788 -10.56830 -10.31910 -9.96687 -9.59094 -9.32115 -8.93647 -8.35493 -8.11007 -8.06911 -6.87026 -5.66078 -2.95244 2.13984 2.68371 3.25837 3.29690 3.39022 3.53446 3.56934 3.58808 3.85552 4.31420 4.41560 4.59803 4.69933 4.95056 5.01942 5.05932 5.20369 5.26391 5.35588 5.46550 5.47612 5.57446 5.64700 5.71330 5.74126 5.85259 5.94204 6.04698 6.11823 6.15832 6.29451 6.34902 6.43887 6.55648 6.59107 6.68563 7.03066 7.08841 7.12321 7.55229 7.78628 7.97956 8.49398 8.86090 9.63136 10.13119 10.48793 11.55643 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.005860 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.516695 B = 4776.879937 C = 6752.110643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.104 4.104 3 C -0.030 4.030 4 N -0.555 5.555 5 H 0.413 0.587 6 C 0.023 3.977 7 C -0.205 4.205 8 C 0.597 3.403 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.110 3.890 12 C -0.133 4.133 13 C -0.138 4.138 14 H 0.106 0.894 15 C 0.455 3.545 16 F -0.188 7.188 17 F -0.200 7.200 18 F -0.154 7.154 19 C 0.164 3.836 20 H 0.071 0.929 21 N -0.708 5.708 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.002 4.002 25 N -0.925 5.925 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.098 3.902 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.389 0.611 41 H 0.254 0.746 42 H 0.051 0.949 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.969 4.977 -2.812 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.157 4.157 4 N -0.150 5.150 5 H 0.249 0.751 6 C -0.111 4.111 7 C -0.216 4.216 8 C 0.385 3.615 9 O -0.409 6.409 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.172 4.172 13 C -0.159 4.159 14 H 0.124 0.876 15 C 0.401 3.599 16 F -0.170 7.170 17 F -0.182 7.182 18 F -0.135 7.135 19 C 0.051 3.949 20 H 0.089 0.911 21 N -0.351 5.351 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.199 4.199 25 N -0.573 5.573 26 Si 0.734 3.266 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.212 1.212 30 C -0.028 4.028 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.226 0.774 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.403 4.786 -3.251 17.394 hybrid contribution -0.531 0.178 0.372 0.673 sum 15.872 4.964 -2.879 16.877 Atomic orbital electron populations 1.20204 0.89211 1.02278 1.02769 1.20565 0.95676 0.90203 1.04634 1.21487 0.82431 0.99011 1.12811 1.41373 1.08011 1.06478 1.59127 0.75103 1.21733 0.98108 0.83707 1.07543 1.20420 0.92805 0.93232 1.15109 1.17335 0.80092 0.83860 0.80208 1.90752 1.33112 1.78091 1.38989 1.47707 1.38302 1.11556 1.35267 1.21755 0.89868 1.01477 0.88216 1.21946 1.03354 0.94054 0.97832 1.22750 1.02467 1.00130 0.90509 0.87597 1.20494 0.75128 0.74513 0.89752 1.93136 1.93252 1.33685 1.96900 1.93109 1.57363 1.93304 1.74388 1.93317 1.52504 1.75075 1.92630 1.20595 0.86593 0.96975 0.90702 0.91105 1.42438 1.00040 1.23308 1.69307 1.19064 0.83093 1.03295 1.31547 0.91352 1.24638 0.97533 0.96853 1.00869 1.69649 1.29391 1.13042 1.45173 0.86343 0.84834 0.77419 0.78028 1.21418 1.21846 1.21232 1.22428 0.99625 0.80411 1.00288 0.90917 0.92589 0.90678 0.81708 0.81404 0.91825 0.88753 0.90395 0.89140 0.77437 0.93667 0.93117 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 10.35 36.00 0.37 -1.15 16 2 C -0.10 -1.68 6.36 -102.54 -0.65 -2.33 16 3 C -0.03 -0.35 11.82 -16.82 -0.20 -0.55 16 4 N -0.56 -5.21 5.90 -12.85 -0.08 -5.28 16 5 H 0.41 2.19 8.96 -40.82 -0.37 1.83 16 6 C 0.02 0.27 9.54 -16.85 -0.16 0.11 16 7 C -0.20 -3.34 5.33 -103.35 -0.55 -3.89 16 8 C 0.60 11.63 7.53 -12.59 -0.09 11.54 16 9 O -0.53 -12.67 16.04 5.25 0.08 -12.59 16 10 N -0.60 -10.02 2.89 -174.09 -0.50 -10.52 16 11 C 0.11 1.39 5.89 -3.71 -0.02 1.37 16 12 C -0.13 -1.88 4.95 -26.61 -0.13 -2.01 16 13 C -0.14 -2.09 2.01 -90.58 -0.18 -2.27 16 14 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.46 7.86 2.69 37.15 0.10 7.96 16 16 F -0.19 -3.38 16.77 2.25 0.04 -3.34 16 17 F -0.20 -3.13 16.77 2.25 0.04 -3.09 16 18 F -0.15 -3.31 14.40 2.25 0.03 -3.27 16 19 C 0.16 3.06 2.45 -67.81 -0.17 2.90 16 20 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 21 N -0.71 -17.01 3.68 -53.31 -0.20 -17.20 16 22 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 25 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 26 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 C 0.10 1.73 6.03 -3.71 -0.02 1.71 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.54 7.64 -51.93 -0.40 1.14 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.17 1.36 7.55 -52.49 -0.40 0.97 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.10 4.55 -51.93 -0.24 0.86 16 38 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 39 H 0.09 1.62 6.11 -51.93 -0.32 1.30 16 40 H 0.39 10.01 4.94 -40.82 -0.20 9.81 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 2.15 7.03 -51.93 -0.36 1.79 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -35.34 357.95 -6.61 -41.95 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.17 Total: 10.49 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.95 Total: 6.46 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.05 Total: -60.09 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 0.11 Total: -9.70 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.34 -6.61 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998314668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.009 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds