Wall clock time and date at job start Wed Apr 1 2020 03:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34488 * 126.83367 * 2 1 4 4 N 1.36451 * 108.85412 * 180.02562 * 3 2 1 5 5 H 0.96998 * 124.84398 * 180.02562 * 4 3 2 6 6 C 1.34656 * 110.29853 * 359.72512 * 4 3 2 7 7 C 1.36764 * 108.39762 * 0.44555 * 6 4 3 8 8 C 1.47267 * 126.93977 * 179.83271 * 7 6 4 9 9 O 1.21627 * 119.99714 * 229.65900 * 8 7 6 10 10 N 1.34773 * 119.99881 * 49.66971 * 8 7 6 11 11 C 1.46931 * 120.63171 * 355.72131 * 10 8 7 12 12 C 1.53191 * 108.77183 * 126.37387 * 11 10 8 13 13 C 1.53042 * 109.34008 * 54.62223 * 12 11 10 14 14 H 1.08997 * 109.42831 * 58.68717 * 13 12 11 15 15 C 1.52993 * 109.48550 * 178.64128 * 13 12 11 16 16 F 1.39908 * 109.46973 * 180.08438 * 15 13 12 17 17 F 1.39900 * 109.47707 * 300.08464 * 15 13 12 18 18 F 1.39904 * 109.47239 * 60.09122 * 15 13 12 19 19 C 1.53034 * 109.54052 * 298.68372 * 13 12 11 20 20 H 1.08992 * 109.50124 * 181.28258 * 19 13 12 21 21 N 1.46508 * 109.49481 * 301.34794 * 19 13 12 22 22 C 1.36937 * 119.99806 * 204.93341 * 21 19 13 23 23 H 1.08004 * 119.99991 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00012 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00025 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00169 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46793 * 60.00270 * 26 24 22 28 28 H 1.48500 * 109.47139 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47177 * 300.00565 * 26 24 22 30 30 C 1.46923 * 120.63111 * 175.70802 * 10 8 7 31 31 H 1.08998 * 109.47382 * 269.96010 * 1 2 3 32 32 H 1.08995 * 109.47350 * 29.96341 * 1 2 3 33 33 H 1.09003 * 109.47149 * 149.95861 * 1 2 3 34 34 H 1.08000 * 125.56994 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.79592 * 180.30074 * 6 4 3 36 36 H 1.08997 * 109.59023 * 246.16285 * 11 10 8 37 37 H 1.09004 * 109.58191 * 6.58886 * 11 10 8 38 38 H 1.08997 * 109.49437 * 174.58791 * 12 11 10 39 39 H 1.09002 * 109.50185 * 294.68372 * 12 11 10 40 40 H 0.96997 * 119.99727 * 24.93302 * 21 19 13 41 41 H 0.97000 * 120.00430 * 179.97438 * 25 24 22 42 42 H 1.09000 * 109.58691 * 113.83294 * 30 10 8 43 43 H 1.09000 * 109.58875 * 353.41240 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6656 -0.6902 0.0051 7 6 2.3864 -1.1741 -0.0006 8 6 1.9750 -2.5881 -0.0008 9 8 1.1543 -2.9825 -0.8072 10 7 2.5077 -3.4450 0.8927 11 6 3.5673 -3.0062 1.8111 12 6 3.1425 -3.3331 3.2461 13 6 2.8002 -4.8214 3.3468 14 1 3.6689 -5.4135 3.0591 15 6 2.4080 -5.1586 4.7866 16 9 2.0970 -6.5195 4.8786 17 9 3.4757 -4.8654 5.6418 18 9 1.2925 -4.3994 5.1561 19 6 1.6321 -5.1423 2.4116 20 1 1.3740 -6.1974 2.5007 21 7 0.4738 -4.3230 2.7771 22 6 -0.7907 -4.7495 2.4701 23 1 -0.9342 -5.6900 1.9589 24 6 -1.8882 -3.9735 2.8168 25 7 -1.7134 -2.8276 3.4403 26 14 -3.6133 -4.5556 2.3987 27 1 -3.8707 -5.8584 3.0633 28 1 -4.6020 -3.5539 2.8721 29 1 -3.7383 -4.7170 0.9279 30 6 2.0397 -4.8357 0.9670 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 1.9867 2.1059 0.0004 35 1 4.5664 -1.2859 0.0106 36 1 4.4943 -3.5293 1.5762 37 1 3.7163 -1.9311 1.7100 38 1 3.9595 -3.1007 3.9292 39 1 2.2669 -2.7402 3.5104 40 1 0.6027 -3.4785 3.2365 41 1 -2.4802 -2.2852 3.6823 42 1 2.8421 -5.5080 0.6633 43 1 1.1808 -4.9680 0.3091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998314668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:07 Heat of formation + Delta-G solvation = -142.898665 kcal Electronic energy + Delta-G solvation = -32876.276092 eV Core-core repulsion = 28120.854405 eV Total energy + Delta-G solvation = -4755.421687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.90077 -48.43266 -48.31164 -42.11438 -40.64038 -38.64297 -35.84286 -34.24636 -33.34480 -32.80751 -31.14857 -30.05441 -28.03382 -27.43340 -25.93620 -24.68799 -23.96935 -23.01869 -21.12052 -20.56754 -19.77224 -19.27871 -19.14722 -19.04141 -18.62577 -18.22975 -17.23404 -16.83881 -16.22053 -16.18848 -15.87990 -15.45136 -15.16292 -15.11984 -15.01642 -14.80429 -14.66556 -14.61980 -14.49930 -14.43201 -14.18804 -14.04079 -13.87594 -13.67792 -13.63406 -13.45307 -13.18702 -13.04508 -12.81808 -12.74305 -12.33440 -12.25426 -12.11416 -11.91039 -11.65246 -11.52972 -11.03129 -10.74518 -9.62760 -9.37202 -9.06625 -8.83243 -7.88108 -5.13374 1.12584 1.41771 1.45884 1.49684 1.57155 1.95815 2.01906 2.45770 2.56594 2.65977 2.99370 3.11659 3.27380 3.45203 3.82592 3.87495 3.99928 4.06370 4.08807 4.13507 4.32072 4.35544 4.42436 4.53876 4.67549 4.69603 4.73683 4.78467 4.84410 4.85075 4.87749 5.03261 5.10861 5.19848 5.29936 5.34866 5.52840 5.76867 5.88070 6.06895 6.31836 6.67387 6.84372 7.41392 7.48267 8.14296 8.37238 9.34077 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.005860 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.516695 B = 4776.879937 C = 6752.110643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.163 4.163 3 C 0.000 4.000 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.061 3.939 7 C -0.258 4.258 8 C 0.585 3.415 9 O -0.600 6.600 10 N -0.594 5.594 11 C 0.109 3.891 12 C -0.129 4.129 13 C -0.125 4.125 14 H 0.158 0.842 15 C 0.451 3.549 16 F -0.194 7.194 17 F -0.186 7.186 18 F -0.186 7.186 19 C 0.155 3.845 20 H 0.067 0.933 21 N -0.717 5.717 22 C -0.231 4.231 23 H 0.067 0.933 24 C -0.065 4.065 25 N -0.956 5.956 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.290 1.290 30 C 0.104 3.896 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.026 0.974 34 H 0.200 0.800 35 H 0.213 0.787 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.379 0.621 41 H 0.246 0.754 42 H 0.098 0.902 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.725 5.742 -2.880 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.169 4.169 3 C -0.129 4.129 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.075 4.075 7 C -0.268 4.268 8 C 0.375 3.625 9 O -0.481 6.481 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.168 4.168 13 C -0.145 4.145 14 H 0.175 0.825 15 C 0.397 3.603 16 F -0.176 7.176 17 F -0.168 7.168 18 F -0.167 7.167 19 C 0.045 3.955 20 H 0.085 0.915 21 N -0.359 5.359 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.258 4.258 25 N -0.607 5.607 26 Si 0.786 3.214 27 H -0.204 1.204 28 H -0.222 1.222 29 H -0.217 1.217 30 C -0.021 4.021 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.216 0.784 35 H 0.229 0.771 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.063 0.937 40 H 0.214 0.786 41 H 0.054 0.946 42 H 0.116 0.884 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.255 5.535 -3.295 22.210 hybrid contribution -1.882 -0.092 0.404 1.927 sum 19.373 5.443 -2.891 20.330 Atomic orbital electron populations 1.19976 0.91714 1.01284 1.00401 1.20624 0.94917 0.92345 1.09017 1.21785 0.82655 0.99200 1.09294 1.41389 1.08181 1.06297 1.56726 0.71904 1.22155 0.97348 0.84464 1.03533 1.20351 0.95274 0.91511 1.19660 1.18005 0.79217 0.85466 0.79771 1.90698 1.36148 1.79389 1.41874 1.47842 1.38721 1.10792 1.35176 1.22151 0.90037 1.03143 0.85954 1.21956 1.02758 0.92250 0.99808 1.22774 1.02092 1.01922 0.87741 0.82483 1.20849 0.74506 0.73865 0.91051 1.93124 1.93354 1.34089 1.97007 1.93129 1.56293 1.93162 1.74187 1.93263 1.54495 1.75932 1.93032 1.20828 0.86479 0.95842 0.92327 0.91546 1.42510 1.00522 1.23571 1.69270 1.19385 0.84956 1.02639 1.29384 0.91543 1.25299 1.00702 0.97520 1.02310 1.69789 1.29447 1.14174 1.47262 0.85476 0.81399 0.77175 0.77310 1.20353 1.22156 1.21746 1.22194 0.99635 0.82300 0.98017 0.94044 0.89711 0.95431 0.78352 0.77075 0.86518 0.87439 0.86640 0.93709 0.78574 0.94552 0.88386 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.90 10.35 71.24 0.74 -2.16 16 2 C -0.16 -5.29 6.36 -18.51 -0.12 -5.41 16 3 C 0.00 -0.01 11.82 83.12 0.98 0.98 16 4 N -0.53 -7.32 5.90 -194.56 -1.15 -8.47 16 5 H 0.44 1.89 8.96 -92.71 -0.83 1.06 16 6 C 0.06 1.13 9.54 83.91 0.80 1.94 16 7 C -0.26 -8.24 5.33 -19.04 -0.10 -8.34 16 8 C 0.58 23.45 7.53 86.62 0.65 24.10 16 9 O -0.60 -30.78 16.04 -4.12 -0.07 -30.84 16 10 N -0.59 -19.36 2.89 -822.96 -2.38 -21.74 16 11 C 0.11 2.28 5.89 86.36 0.51 2.79 16 12 C -0.13 -3.25 4.95 30.67 0.15 -3.10 16 13 C -0.13 -3.44 2.01 -10.77 -0.02 -3.46 16 14 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 15 C 0.45 14.87 2.69 71.98 0.19 15.06 16 16 F -0.19 -6.72 16.77 44.97 0.75 -5.96 16 17 F -0.19 -5.28 16.77 44.97 0.75 -4.53 16 18 F -0.19 -8.11 14.40 44.97 0.65 -7.46 16 19 C 0.16 5.76 2.45 45.07 0.11 5.87 16 20 H 0.07 2.51 7.70 -2.39 -0.02 2.49 16 21 N -0.72 -35.82 3.68 -322.57 -1.19 -37.00 16 22 C -0.23 -13.40 9.93 84.03 0.83 -12.57 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 25 N -0.96 -60.86 13.06 21.65 0.28 -60.58 16 26 Si 0.96 49.94 29.55 68.60 2.03 51.97 16 27 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 29 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 30 C 0.10 3.62 6.03 86.36 0.52 4.14 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.03 1.25 7.64 -2.39 -0.02 1.23 16 34 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.21 1.99 7.55 -2.91 -0.02 1.97 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 2.01 4.55 -2.39 -0.01 2.00 16 38 H 0.12 2.08 7.77 -2.39 -0.02 2.06 16 39 H 0.04 1.58 6.11 -2.39 -0.01 1.57 16 40 H 0.38 20.51 4.94 -92.71 -0.46 20.05 16 41 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.05 2.34 7.03 -2.39 -0.02 2.32 16 Total: -1.00 -89.26 357.95 5.20 -84.06 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.20 Total: 24.22 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 5.72 Total: 16.34 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -4.43 Total: -127.79 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 9 Polarization: -20.11 SS G_CDS: 2.16 Total: -17.95 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.03 Total: 51.97 kcal Total: -89.26 5.20 -84.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998314668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.839 kcal (2) G-P(sol) polarization free energy of solvation -89.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds