Wall clock time and date at job start Wed Apr 1 2020 03:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83500 * 2 1 4 4 N 1.36452 * 108.85765 * 180.26555 * 3 2 1 5 5 H 0.96997 * 124.85273 * 179.72850 * 4 3 2 6 6 C 1.34660 * 110.29333 * 359.71736 * 4 3 2 7 7 C 1.36769 * 108.39952 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94197 * 180.02562 * 7 6 4 9 9 O 1.21631 * 120.00115 * 143.82466 * 8 7 6 10 10 N 1.34774 * 120.00094 * 323.82542 * 8 7 6 11 11 C 1.46927 * 120.63298 * 354.07965 * 10 8 7 12 12 C 1.53184 * 108.78062 * 233.61299 * 11 10 8 13 13 C 1.53049 * 109.31023 * 305.36372 * 12 11 10 14 14 H 1.08995 * 109.45977 * 301.34283 * 13 12 11 15 15 C 1.53006 * 109.45801 * 181.38498 * 13 12 11 16 16 F 1.39904 * 109.46958 * 299.93208 * 15 13 12 17 17 F 1.39898 * 109.47151 * 59.93404 * 15 13 12 18 18 F 1.39899 * 109.46965 * 179.97438 * 15 13 12 19 19 C 1.53041 * 109.53777 * 61.36549 * 13 12 11 20 20 H 1.08999 * 109.49424 * 178.67906 * 19 13 12 21 21 N 1.46503 * 109.49577 * 58.58551 * 19 13 12 22 22 C 1.36932 * 119.99591 * 155.16356 * 21 19 13 23 23 H 1.08001 * 120.00282 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00253 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99373 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00509 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47202 * 60.00023 * 26 24 22 28 28 H 1.48501 * 109.47326 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47335 * 300.00163 * 26 24 22 30 30 C 1.46928 * 120.63300 * 174.08566 * 10 8 7 31 31 H 1.09005 * 109.47133 * 270.20249 * 1 2 3 32 32 H 1.09001 * 109.47339 * 30.19725 * 1 2 3 33 33 H 1.08998 * 109.47145 * 150.20081 * 1 2 3 34 34 H 1.08001 * 125.57268 * 359.97438 * 3 2 1 35 35 H 1.08005 * 125.79960 * 179.97438 * 6 4 3 36 36 H 1.09005 * 109.58486 * 113.81752 * 11 10 8 37 37 H 1.09000 * 109.70017 * 353.47280 * 11 10 8 38 38 H 1.08997 * 109.50183 * 185.41265 * 12 11 10 39 39 H 1.09002 * 109.52873 * 65.32942 * 12 11 10 40 40 H 0.96996 * 120.00396 * 335.16037 * 21 19 13 41 41 H 0.97006 * 120.00052 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.58696 * 6.60036 * 30 10 8 43 43 H 1.08999 * 109.58616 * 246.18005 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2413 -0.0110 6 6 3.6656 -0.6903 -0.0037 7 6 2.3863 -1.1741 0.0045 8 6 1.9749 -2.5880 0.0101 9 8 0.9920 -2.9329 0.6381 10 7 2.6874 -3.4999 -0.6806 11 6 3.7983 -3.0823 -1.5468 12 6 3.5756 -3.6606 -2.9477 13 6 3.3935 -5.1768 -2.8462 14 1 4.2762 -5.6185 -2.3838 15 6 3.2053 -5.7625 -4.2472 16 9 2.0719 -5.1965 -4.8408 17 9 4.3315 -5.4778 -5.0268 18 9 3.0393 -7.1485 -4.1547 19 6 2.1614 -5.4884 -1.9936 20 1 2.0187 -6.5677 -1.9412 21 7 0.9796 -4.8671 -2.5967 22 6 -0.2650 -5.3834 -2.3528 23 1 -0.3754 -6.2488 -1.7162 24 6 -1.3849 -4.7944 -2.9238 25 7 -1.2502 -3.7401 -3.7000 26 14 -3.0826 -5.4991 -2.5917 27 1 -3.3594 -5.4570 -1.1332 28 1 -4.1019 -4.6953 -3.3129 29 1 -3.1362 -6.9056 -3.0653 30 6 2.3680 -4.9307 -0.5819 31 1 -0.3634 0.0036 1.0277 32 1 -0.3634 0.8882 -0.5169 33 1 -0.3633 -0.8918 -0.5107 34 1 1.9868 2.1059 -0.0004 35 1 4.5664 -1.2861 -0.0077 36 1 4.7383 -3.4571 -1.1418 37 1 3.8323 -1.9942 -1.6018 38 1 4.4395 -3.4391 -3.5743 39 1 2.6833 -3.2157 -3.3880 40 1 1.0788 -4.0900 -3.1687 41 1 -2.0327 -3.3287 -4.0993 42 1 1.4558 -5.0621 0.0001 43 1 3.1913 -5.4563 -0.0982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998314669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:12 Heat of formation + Delta-G solvation = -116.038871 kcal Electronic energy + Delta-G solvation = -32756.763567 eV Core-core repulsion = 28002.506607 eV Total energy + Delta-G solvation = -4754.256959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.49656 -47.08308 -46.79952 -41.14446 -39.33475 -37.13666 -34.14677 -32.64810 -32.25951 -31.21574 -29.82558 -28.55357 -26.68096 -26.31999 -24.02650 -23.40017 -22.53529 -21.79147 -20.06438 -19.28390 -18.49312 -18.00249 -17.77801 -17.56702 -17.00940 -16.87501 -15.84220 -15.38387 -14.91125 -14.49240 -14.27659 -14.08599 -13.93850 -13.77513 -13.60401 -13.47359 -13.36457 -13.22959 -12.99814 -12.96469 -12.86149 -12.74244 -12.49574 -12.39622 -12.25082 -12.06613 -11.95689 -11.49209 -11.11645 -10.96563 -10.77199 -10.74240 -10.55642 -10.30964 -9.95265 -9.57406 -9.27984 -8.91853 -8.41925 -8.12982 -8.07809 -6.85013 -5.64160 -2.93108 2.04740 2.60296 3.22881 3.29891 3.44871 3.54830 3.58349 3.60184 3.93296 4.31872 4.41670 4.60314 4.71627 4.90236 5.00758 5.05047 5.17742 5.23961 5.35122 5.46572 5.46864 5.52704 5.62074 5.69255 5.72012 5.84164 5.94015 6.00253 6.10127 6.15691 6.18048 6.32929 6.36071 6.53823 6.56169 6.68963 6.97470 7.03429 7.13689 7.50183 7.80262 8.00006 8.51370 8.89743 9.65019 10.15084 10.50423 11.57818 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008987 B = 0.005624 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.730591 B = 4977.541534 C = 7042.144118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.106 4.106 3 C -0.030 4.030 4 N -0.555 5.555 5 H 0.414 0.586 6 C 0.027 3.973 7 C -0.207 4.207 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.598 5.598 11 C 0.110 3.890 12 C -0.134 4.134 13 C -0.138 4.138 14 H 0.106 0.894 15 C 0.455 3.545 16 F -0.154 7.154 17 F -0.200 7.200 18 F -0.188 7.188 19 C 0.164 3.836 20 H 0.071 0.929 21 N -0.707 5.707 22 C -0.237 4.237 23 H 0.068 0.932 24 C -0.003 4.003 25 N -0.926 5.926 26 Si 0.903 3.097 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.287 1.287 30 C 0.098 3.902 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.388 0.612 41 H 0.253 0.747 42 H 0.101 0.899 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.764 7.125 4.705 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.158 4.158 4 N -0.149 5.149 5 H 0.249 0.751 6 C -0.107 4.107 7 C -0.218 4.218 8 C 0.380 3.620 9 O -0.402 6.402 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.158 4.158 14 H 0.124 0.876 15 C 0.401 3.599 16 F -0.135 7.135 17 F -0.182 7.182 18 F -0.170 7.170 19 C 0.052 3.948 20 H 0.088 0.912 21 N -0.350 5.350 22 C -0.368 4.368 23 H 0.086 0.914 24 C -0.200 4.200 25 N -0.574 5.574 26 Si 0.735 3.265 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.214 1.214 30 C -0.028 4.028 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.113 6.939 5.035 18.252 hybrid contribution -0.445 0.037 -0.424 0.616 sum 15.668 6.976 4.611 17.760 Atomic orbital electron populations 1.20155 0.89301 1.02756 1.01783 1.20578 0.95679 0.90345 1.04625 1.21499 0.82460 0.99020 1.12807 1.41415 1.08051 1.06552 1.58910 0.75052 1.21900 0.98369 0.83651 1.06823 1.20488 0.92650 0.93293 1.15379 1.17325 0.82025 0.83752 0.78888 1.90776 1.25117 1.80486 1.43829 1.47660 1.33084 1.07080 1.45274 1.21809 0.89301 1.01045 0.89245 1.21955 1.04018 0.92961 0.98299 1.22756 1.03294 0.98389 0.91397 0.87600 1.20499 0.73983 0.76119 0.89306 1.93318 1.50649 1.84137 1.85420 1.93109 1.53311 1.93426 1.78322 1.93134 1.95406 1.31917 1.96510 1.20588 0.85946 0.97698 0.90618 0.91169 1.42425 1.00404 1.35267 1.56924 1.19054 0.83656 1.09654 1.24467 0.91358 1.24642 0.97550 0.97907 0.99863 1.69652 1.28756 1.23034 1.35950 0.86331 0.84604 0.77964 0.77641 1.21222 1.21867 1.21437 1.22416 1.01294 0.79412 0.99661 0.91830 0.92449 0.90443 0.81690 0.81186 0.91917 0.88706 0.90361 0.89133 0.77473 0.93680 0.88086 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.11 36.00 0.36 -0.99 16 2 C -0.11 -1.64 6.35 -102.54 -0.65 -2.29 16 3 C -0.03 -0.34 11.82 -16.82 -0.20 -0.54 16 4 N -0.55 -4.98 5.90 -12.84 -0.08 -5.06 16 5 H 0.41 2.04 8.96 -40.82 -0.37 1.67 16 6 C 0.03 0.30 9.50 -16.84 -0.16 0.14 16 7 C -0.21 -3.32 5.51 -103.35 -0.57 -3.89 16 8 C 0.59 11.50 7.56 -12.60 -0.10 11.40 16 9 O -0.53 -12.61 16.20 5.25 0.09 -12.52 16 10 N -0.60 -10.00 2.89 -174.10 -0.50 -10.51 16 11 C 0.11 1.37 5.35 -3.71 -0.02 1.35 16 12 C -0.13 -1.88 4.95 -26.61 -0.13 -2.02 16 13 C -0.14 -2.09 2.02 -90.57 -0.18 -2.27 16 14 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 15 C 0.46 7.88 2.69 37.16 0.10 7.98 16 16 F -0.15 -3.32 14.40 2.25 0.03 -3.29 16 17 F -0.20 -3.13 16.77 2.25 0.04 -3.09 16 18 F -0.19 -3.38 16.77 2.25 0.04 -3.34 16 19 C 0.16 3.08 2.45 -67.81 -0.17 2.91 16 20 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 21 N -0.71 -17.16 3.69 -53.31 -0.20 -17.36 16 22 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 25 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 26 Si 0.90 23.36 29.55 -169.99 -5.02 18.34 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 C 0.10 1.72 6.05 -3.71 -0.02 1.70 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 34 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.17 1.34 6.97 -52.48 -0.37 0.98 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.09 4.61 -51.93 -0.24 0.85 16 38 H 0.08 0.90 7.76 -51.93 -0.40 0.49 16 39 H 0.09 1.62 6.11 -51.93 -0.32 1.31 16 40 H 0.39 10.12 4.94 -40.82 -0.20 9.92 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.10 2.15 7.00 -51.93 -0.36 1.79 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -36.02 357.39 -6.63 -42.65 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.16 Total: 9.88 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.98 Total: 6.51 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.05 Total: -60.52 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 0.11 Total: -9.72 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.02 -6.63 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998314669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.388 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds