Wall clock time and date at job start Wed Apr 1 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 126.83500 * 2 1 4 4 N 1.36452 * 108.85765 * 180.26555 * 3 2 1 5 5 H 0.96997 * 124.85273 * 179.72850 * 4 3 2 6 6 C 1.34660 * 110.29333 * 359.71736 * 4 3 2 7 7 C 1.36769 * 108.39952 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94197 * 180.02562 * 7 6 4 9 9 O 1.21631 * 120.00115 * 143.82466 * 8 7 6 10 10 N 1.34774 * 120.00094 * 323.82542 * 8 7 6 11 11 C 1.46927 * 120.63298 * 354.07965 * 10 8 7 12 12 C 1.53184 * 108.78062 * 233.61299 * 11 10 8 13 13 C 1.53049 * 109.31023 * 305.36372 * 12 11 10 14 14 H 1.08995 * 109.45977 * 301.34283 * 13 12 11 15 15 C 1.53006 * 109.45801 * 181.38498 * 13 12 11 16 16 F 1.39904 * 109.46958 * 299.93208 * 15 13 12 17 17 F 1.39898 * 109.47151 * 59.93404 * 15 13 12 18 18 F 1.39899 * 109.46965 * 179.97438 * 15 13 12 19 19 C 1.53041 * 109.53777 * 61.36549 * 13 12 11 20 20 H 1.08999 * 109.49424 * 178.67906 * 19 13 12 21 21 N 1.46503 * 109.49577 * 58.58551 * 19 13 12 22 22 C 1.36932 * 119.99591 * 155.16356 * 21 19 13 23 23 H 1.08001 * 120.00282 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00253 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99373 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00509 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47202 * 60.00023 * 26 24 22 28 28 H 1.48501 * 109.47326 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47335 * 300.00163 * 26 24 22 30 30 C 1.46928 * 120.63300 * 174.08566 * 10 8 7 31 31 H 1.09005 * 109.47133 * 270.20249 * 1 2 3 32 32 H 1.09001 * 109.47339 * 30.19725 * 1 2 3 33 33 H 1.08998 * 109.47145 * 150.20081 * 1 2 3 34 34 H 1.08001 * 125.57268 * 359.97438 * 3 2 1 35 35 H 1.08005 * 125.79960 * 179.97438 * 6 4 3 36 36 H 1.09005 * 109.58486 * 113.81752 * 11 10 8 37 37 H 1.09000 * 109.70017 * 353.47280 * 11 10 8 38 38 H 1.08997 * 109.50183 * 185.41265 * 12 11 10 39 39 H 1.09002 * 109.52873 * 65.32942 * 12 11 10 40 40 H 0.96996 * 120.00396 * 335.16037 * 21 19 13 41 41 H 0.97006 * 120.00052 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.58696 * 6.60036 * 30 10 8 43 43 H 1.08999 * 109.58616 * 246.18005 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2413 -0.0110 6 6 3.6656 -0.6903 -0.0037 7 6 2.3863 -1.1741 0.0045 8 6 1.9749 -2.5880 0.0101 9 8 0.9920 -2.9329 0.6381 10 7 2.6874 -3.4999 -0.6806 11 6 3.7983 -3.0823 -1.5468 12 6 3.5756 -3.6606 -2.9477 13 6 3.3935 -5.1768 -2.8462 14 1 4.2762 -5.6185 -2.3838 15 6 3.2053 -5.7625 -4.2472 16 9 2.0719 -5.1965 -4.8408 17 9 4.3315 -5.4778 -5.0268 18 9 3.0393 -7.1485 -4.1547 19 6 2.1614 -5.4884 -1.9936 20 1 2.0187 -6.5677 -1.9412 21 7 0.9796 -4.8671 -2.5967 22 6 -0.2650 -5.3834 -2.3528 23 1 -0.3754 -6.2488 -1.7162 24 6 -1.3849 -4.7944 -2.9238 25 7 -1.2502 -3.7401 -3.7000 26 14 -3.0826 -5.4991 -2.5917 27 1 -3.3594 -5.4570 -1.1332 28 1 -4.1019 -4.6953 -3.3129 29 1 -3.1362 -6.9056 -3.0653 30 6 2.3680 -4.9307 -0.5819 31 1 -0.3634 0.0036 1.0277 32 1 -0.3634 0.8882 -0.5169 33 1 -0.3633 -0.8918 -0.5107 34 1 1.9868 2.1059 -0.0004 35 1 4.5664 -1.2861 -0.0077 36 1 4.7383 -3.4571 -1.1418 37 1 3.8323 -1.9942 -1.6018 38 1 4.4395 -3.4391 -3.5743 39 1 2.6833 -3.2157 -3.3880 40 1 1.0788 -4.0900 -3.1687 41 1 -2.0327 -3.3287 -4.0993 42 1 1.4558 -5.0621 0.0001 43 1 3.1913 -5.4563 -0.0982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998314669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:11 Heat of formation + Delta-G solvation = -141.837509 kcal Electronic energy + Delta-G solvation = -32757.882280 eV Core-core repulsion = 28002.506607 eV Total energy + Delta-G solvation = -4755.375672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.90038 -48.43348 -48.31098 -42.13110 -40.62542 -38.61030 -35.85434 -34.25705 -33.33903 -32.80795 -31.15985 -30.03970 -28.02517 -27.44160 -25.93358 -24.70616 -23.96053 -23.00501 -21.15200 -20.58461 -19.75392 -19.29988 -19.16164 -19.03928 -18.56647 -18.21007 -17.17993 -16.85099 -16.24115 -16.18847 -15.86257 -15.45089 -15.15588 -15.14488 -15.01332 -14.80236 -14.69661 -14.55543 -14.49675 -14.42939 -14.15542 -14.05144 -13.90088 -13.66891 -13.61684 -13.43637 -13.19321 -13.04082 -12.81333 -12.74790 -12.34085 -12.24913 -12.11361 -11.89214 -11.64893 -11.52599 -11.02244 -10.70720 -9.63525 -9.37693 -9.07164 -8.82264 -7.88715 -5.13558 1.03316 1.41011 1.45658 1.49421 1.55997 1.96019 2.11937 2.49411 2.56690 2.69912 3.00004 3.11996 3.27711 3.45122 3.82501 3.88956 4.00142 4.05965 4.07611 4.13860 4.31010 4.36339 4.41676 4.52799 4.67145 4.69137 4.73447 4.78742 4.84443 4.85379 4.88117 5.01200 5.10161 5.20630 5.29880 5.34431 5.52311 5.78723 5.89005 6.05315 6.31558 6.70586 6.83244 7.40943 7.53436 8.14617 8.36654 9.33976 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008987 B = 0.005624 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.730591 B = 4977.541534 C = 7042.144118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.163 4.163 3 C -0.001 4.001 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.066 3.934 7 C -0.262 4.262 8 C 0.579 3.421 9 O -0.597 6.597 10 N -0.597 5.597 11 C 0.107 3.893 12 C -0.130 4.130 13 C -0.125 4.125 14 H 0.159 0.841 15 C 0.451 3.549 16 F -0.186 7.186 17 F -0.186 7.186 18 F -0.194 7.194 19 C 0.155 3.845 20 H 0.066 0.934 21 N -0.717 5.717 22 C -0.228 4.228 23 H 0.067 0.933 24 C -0.069 4.069 25 N -0.960 5.960 26 Si 0.958 3.042 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.276 1.276 30 C 0.104 3.896 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.201 0.799 35 H 0.214 0.786 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.245 0.755 42 H 0.051 0.949 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.628 8.276 5.235 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.169 4.169 3 C -0.130 4.130 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.071 4.071 7 C -0.272 4.272 8 C 0.370 3.630 9 O -0.479 6.479 10 N -0.328 5.328 11 C -0.014 4.014 12 C -0.169 4.169 13 C -0.145 4.145 14 H 0.176 0.824 15 C 0.397 3.603 16 F -0.168 7.168 17 F -0.168 7.168 18 F -0.176 7.176 19 C 0.044 3.956 20 H 0.084 0.916 21 N -0.358 5.358 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.261 4.261 25 N -0.611 5.611 26 Si 0.788 3.212 27 H -0.217 1.217 28 H -0.222 1.222 29 H -0.202 1.202 30 C -0.022 4.022 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.218 0.782 35 H 0.231 0.769 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.213 0.787 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.084 8.080 5.559 23.253 hybrid contribution -1.814 -0.341 -0.579 1.934 sum 19.270 7.739 4.980 21.355 Atomic orbital electron populations 1.19960 0.91501 1.00724 1.00878 1.20693 0.95160 0.92353 1.08728 1.21814 0.82603 0.99260 1.09314 1.41438 1.08294 1.06327 1.56513 0.71862 1.22295 0.97553 0.84459 1.02805 1.20400 0.95224 0.91509 1.20071 1.18038 0.81217 0.85563 0.78164 1.90721 1.28287 1.81796 1.47048 1.47795 1.33710 1.06211 1.45109 1.22219 0.89597 1.02140 0.87464 1.21974 1.03443 0.91593 0.99866 1.22782 1.02849 0.99590 0.89246 0.82350 1.20868 0.73333 0.75782 0.90344 1.93263 1.52732 1.84668 1.86129 1.93129 1.52164 1.93283 1.78176 1.93122 1.95445 1.32445 1.96559 1.20840 0.85846 0.97062 0.91803 0.91614 1.42506 1.01024 1.35132 1.57187 1.19393 0.85493 1.08729 1.22423 0.91483 1.25326 1.00746 0.98977 1.01088 1.69800 1.28761 1.24668 1.37857 0.85444 0.81103 0.77726 0.76906 1.21729 1.22207 1.20227 1.22182 1.01122 0.80889 0.97966 0.92392 0.90242 0.96411 0.78212 0.76941 0.86288 0.87432 0.86523 0.93872 0.78669 0.94610 0.93005 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.62 10.11 71.24 0.72 -1.90 16 2 C -0.16 -5.09 6.35 -18.52 -0.12 -5.20 16 3 C 0.00 -0.02 11.82 83.12 0.98 0.96 16 4 N -0.53 -6.82 5.90 -194.55 -1.15 -7.97 16 5 H 0.44 1.50 8.96 -92.71 -0.83 0.67 16 6 C 0.07 1.17 9.50 83.91 0.80 1.96 16 7 C -0.26 -8.21 5.51 -19.04 -0.10 -8.31 16 8 C 0.58 23.25 7.56 86.62 0.65 23.90 16 9 O -0.60 -31.12 16.20 -4.13 -0.07 -31.19 16 10 N -0.60 -19.32 2.89 -822.97 -2.38 -21.70 16 11 C 0.11 2.20 5.35 86.36 0.46 2.67 16 12 C -0.13 -3.26 4.95 30.67 0.15 -3.11 16 13 C -0.12 -3.41 2.02 -10.76 -0.02 -3.43 16 14 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 15 C 0.45 14.88 2.69 71.98 0.19 15.07 16 16 F -0.19 -8.19 14.40 44.97 0.65 -7.55 16 17 F -0.19 -5.27 16.77 44.97 0.75 -4.51 16 18 F -0.19 -6.72 16.77 44.97 0.75 -5.97 16 19 C 0.15 5.75 2.45 45.07 0.11 5.86 16 20 H 0.07 2.49 7.70 -2.39 -0.02 2.47 16 21 N -0.72 -36.20 3.69 -322.57 -1.19 -37.39 16 22 C -0.23 -13.36 9.93 84.04 0.83 -12.53 16 23 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.96 -62.22 13.06 21.65 0.28 -61.94 16 26 Si 0.96 50.55 29.55 68.60 2.03 52.58 16 27 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 28 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 29 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 30 C 0.10 3.60 6.05 86.36 0.52 4.12 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.21 1.86 6.97 -2.91 -0.02 1.84 16 36 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.11 1.97 4.61 -2.39 -0.01 1.96 16 38 H 0.12 2.07 7.76 -2.39 -0.02 2.05 16 39 H 0.04 1.53 6.11 -2.39 -0.01 1.52 16 40 H 0.38 20.74 4.94 -92.71 -0.46 20.28 16 41 H 0.25 15.61 8.31 -92.70 -0.77 14.84 16 42 H 0.05 2.33 7.00 -2.39 -0.02 2.31 16 43 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -91.57 357.39 5.13 -86.44 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.20 Total: 22.91 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.65 Total: 16.29 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -4.43 Total: -129.00 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.07 Total: -31.19 kcal Atomic # 9 Polarization: -20.19 SS G_CDS: 2.16 Total: -18.03 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Total: -91.57 5.13 -86.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998314669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.402 kcal (2) G-P(sol) polarization free energy of solvation -91.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds