Wall clock time and date at job start Wed Apr 1 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34493 * 126.83603 * 2 1 4 4 N 1.36441 * 108.85747 * 180.24757 * 3 2 1 5 5 H 0.97003 * 124.85286 * 179.76434 * 4 3 2 6 6 C 1.34660 * 110.29919 * 359.75244 * 4 3 2 7 7 C 1.36772 * 108.39493 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94018 * 179.97438 * 7 6 4 9 9 O 1.21624 * 120.00513 * 143.95793 * 8 7 6 10 10 N 1.34782 * 119.99871 * 323.95062 * 8 7 6 11 11 C 1.46923 * 120.63134 * 354.07297 * 10 8 7 12 12 C 1.53186 * 108.78042 * 233.58936 * 11 10 8 13 13 C 1.53046 * 109.31302 * 305.36589 * 12 11 10 14 14 H 1.09000 * 109.44714 * 301.35534 * 13 12 11 15 15 C 1.52997 * 109.46494 * 181.38203 * 13 12 11 16 16 F 1.39901 * 109.47333 * 299.93589 * 15 13 12 17 17 F 1.39909 * 109.46846 * 59.93055 * 15 13 12 18 18 F 1.39898 * 109.47205 * 179.97438 * 15 13 12 19 19 C 1.53040 * 109.53469 * 61.35930 * 13 12 11 20 20 H 1.09001 * 109.49842 * 58.59584 * 19 13 12 21 21 N 1.46501 * 109.49514 * 178.65260 * 19 13 12 22 22 C 1.36943 * 120.00075 * 204.93865 * 21 19 13 23 23 H 1.08000 * 120.00076 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00055 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00016 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00191 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47198 * 59.99762 * 26 24 22 28 28 H 1.48497 * 109.47447 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47038 * 300.00029 * 26 24 22 30 30 C 1.46929 * 120.63028 * 174.05565 * 10 8 7 31 31 H 1.08995 * 109.47262 * 270.14953 * 1 2 3 32 32 H 1.09003 * 109.46857 * 30.15081 * 1 2 3 33 33 H 1.08996 * 109.46966 * 150.14712 * 1 2 3 34 34 H 1.08000 * 125.57000 * 359.96531 * 3 2 1 35 35 H 1.07996 * 125.79962 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.58623 * 113.79945 * 11 10 8 37 37 H 1.09008 * 109.70322 * 353.44684 * 11 10 8 38 38 H 1.08998 * 109.50489 * 185.41450 * 12 11 10 39 39 H 1.09001 * 109.52488 * 65.32943 * 12 11 10 40 40 H 0.97003 * 120.00158 * 24.93551 * 21 19 13 41 41 H 0.96999 * 120.00223 * 180.02562 * 25 24 22 42 42 H 1.08991 * 109.58595 * 6.62127 * 30 10 8 43 43 H 1.09005 * 109.58141 * 246.19858 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3840 1.2413 -0.0100 6 6 3.6656 -0.6902 -0.0038 7 6 2.3863 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.9906 -2.9333 0.6329 10 7 2.6891 -3.4995 -0.6823 11 6 3.8017 -3.0812 -1.5458 12 6 3.5825 -3.6592 -2.9474 13 6 3.4006 -5.1755 -2.8468 14 1 4.2825 -5.6167 -2.3823 15 6 3.2158 -5.7609 -4.2483 16 9 2.0836 -5.1951 -4.8444 17 9 4.3437 -5.4755 -5.0253 18 9 3.0501 -7.1470 -4.1565 19 6 2.1668 -5.4877 -1.9970 20 1 1.2883 -5.0257 -2.4476 21 7 1.9750 -6.9384 -1.9279 22 6 0.7288 -7.4538 -1.6895 23 1 -0.1126 -6.7907 -1.5528 24 6 0.5472 -8.8284 -1.6235 25 7 1.5726 -9.6365 -1.7907 26 14 -1.1525 -9.5314 -1.2976 27 1 -2.0818 -9.0978 -2.3716 28 1 -1.0790 -11.0144 -1.2760 29 1 -1.6479 -9.0407 0.0135 30 6 2.3699 -4.9303 -0.5847 31 1 -0.3633 0.0027 1.0276 32 1 -0.3633 0.8887 -0.5162 33 1 -0.3633 -0.8913 -0.5115 34 1 1.9868 2.1059 -0.0005 35 1 4.5664 -1.2859 -0.0076 36 1 4.7409 -3.4558 -1.1389 37 1 3.8355 -1.9930 -1.6005 38 1 4.4477 -3.4373 -3.5720 39 1 2.6909 -3.2145 -3.3895 40 1 2.7307 -7.5340 -2.0512 41 1 1.4457 -10.5970 -1.7450 42 1 1.4565 -5.0622 -0.0048 43 1 3.1925 -5.4558 -0.0993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998314670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:14 Heat of formation + Delta-G solvation = -144.635988 kcal Electronic energy + Delta-G solvation = -31965.514227 eV Core-core repulsion = 27210.017204 eV Total energy + Delta-G solvation = -4755.497023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.94791 -48.46496 -48.36832 -42.18140 -40.67695 -38.69460 -36.23439 -34.36671 -33.34759 -33.01819 -31.25430 -29.86518 -28.10472 -27.42081 -26.04610 -24.86652 -23.44817 -23.09279 -21.58715 -20.86726 -19.63430 -19.40072 -19.19481 -19.05428 -18.65600 -18.32633 -17.36343 -16.82646 -16.57541 -16.14522 -15.75204 -15.51309 -15.21755 -15.11123 -15.06699 -14.83637 -14.81459 -14.64327 -14.53754 -14.48914 -14.24597 -14.08939 -13.94897 -13.81969 -13.61840 -13.51437 -13.19056 -13.06555 -12.89841 -12.60967 -12.33204 -12.25279 -12.19004 -12.08163 -11.71488 -11.59217 -11.12174 -10.86663 -9.79277 -9.44277 -9.08757 -9.00852 -7.95588 -5.25468 0.93674 1.45051 1.47119 1.53193 1.54782 1.90879 1.98887 2.39723 2.52899 2.58869 2.92313 3.10751 3.14335 3.37846 3.66702 3.80647 3.95585 4.06082 4.09012 4.18936 4.20039 4.29657 4.35102 4.44372 4.53150 4.61833 4.66514 4.71134 4.81938 4.89437 4.94315 4.99114 5.07541 5.16394 5.20990 5.32880 5.45890 5.60542 5.85484 6.03995 6.24809 6.56394 6.79689 7.33660 7.33974 7.99476 8.27068 9.26008 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003945 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.823120 B = 7096.595147 C = 8734.797727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.159 4.159 3 C 0.000 4.000 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.065 3.935 7 C -0.261 4.261 8 C 0.578 3.422 9 O -0.598 6.598 10 N -0.606 5.606 11 C 0.103 3.897 12 C -0.124 4.124 13 C -0.130 4.130 14 H 0.131 0.869 15 C 0.453 3.547 16 F -0.196 7.196 17 F -0.184 7.184 18 F -0.183 7.183 19 C 0.174 3.826 20 H 0.037 0.963 21 N -0.724 5.724 22 C -0.246 4.246 23 H 0.062 0.938 24 C -0.058 4.058 25 N -0.956 5.956 26 Si 0.963 3.037 27 H -0.282 1.282 28 H -0.289 1.289 29 H -0.282 1.282 30 C 0.114 3.886 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.202 0.798 35 H 0.208 0.792 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.383 0.617 41 H 0.252 0.748 42 H 0.054 0.946 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.811 25.685 -0.589 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.165 4.165 3 C -0.129 4.129 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.073 4.073 7 C -0.272 4.272 8 C 0.370 3.630 9 O -0.480 6.480 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.162 4.162 13 C -0.150 4.150 14 H 0.149 0.851 15 C 0.399 3.601 16 F -0.177 7.177 17 F -0.165 7.165 18 F -0.164 7.164 19 C 0.063 3.937 20 H 0.055 0.945 21 N -0.365 5.365 22 C -0.378 4.378 23 H 0.080 0.920 24 C -0.251 4.251 25 N -0.605 5.605 26 Si 0.792 3.208 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.209 1.209 30 C -0.012 4.012 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.219 0.781 35 H 0.225 0.775 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.218 0.782 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.228 25.559 -0.290 28.335 hybrid contribution -1.011 -1.486 -0.097 1.800 sum 11.217 24.073 -0.387 26.561 Atomic orbital electron populations 1.20030 0.90599 1.01447 1.01258 1.20723 0.95588 0.91601 1.08612 1.21908 0.82409 0.99533 1.09001 1.41510 1.08637 1.06262 1.56187 0.71910 1.22299 0.97756 0.84576 1.02637 1.20265 0.95248 0.90964 1.20720 1.18187 0.81413 0.85670 0.77705 1.90738 1.28866 1.81883 1.46516 1.48154 1.34029 1.05857 1.45830 1.22299 0.89235 1.02688 0.87579 1.22045 1.04971 0.89521 0.99688 1.22810 1.02627 1.00406 0.89163 0.85106 1.20763 0.73153 0.76485 0.89692 1.93114 1.53426 1.84955 1.86228 1.93135 1.51890 1.93316 1.78171 1.93262 1.95202 1.31754 1.96224 1.20531 0.94413 0.85201 0.93516 0.94464 1.42528 1.07945 1.00424 1.85645 1.19353 0.87515 0.90526 1.40376 0.91958 1.25378 1.00406 0.96362 1.03001 1.69782 1.30567 1.02502 1.57672 0.85391 0.80402 0.77013 0.78013 1.20884 1.21526 1.20851 1.22106 1.01066 0.79734 0.98276 0.92638 0.89638 0.95048 0.78077 0.77533 0.87693 0.85757 0.85835 0.91429 0.78177 0.93887 0.92696 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.10 71.23 0.72 -1.11 16 2 C -0.16 -3.53 6.35 -18.52 -0.12 -3.65 16 3 C 0.00 0.00 11.82 83.12 0.98 0.99 16 4 N -0.53 -3.99 5.90 -194.56 -1.15 -5.14 16 5 H 0.44 -0.43 8.96 -92.71 -0.83 -1.26 16 6 C 0.06 0.82 9.49 83.92 0.80 1.62 16 7 C -0.26 -6.32 5.51 -19.04 -0.11 -6.42 16 8 C 0.58 19.46 7.56 86.61 0.66 20.12 16 9 O -0.60 -26.77 16.19 -4.11 -0.07 -26.84 16 10 N -0.61 -17.65 2.97 -822.98 -2.45 -20.09 16 11 C 0.10 1.77 5.35 86.36 0.46 2.23 16 12 C -0.12 -2.50 5.12 30.67 0.16 -2.34 16 13 C -0.13 -3.81 1.82 -10.77 -0.02 -3.83 16 14 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 15 C 0.45 15.59 2.68 71.98 0.19 15.78 16 16 F -0.20 -7.29 16.33 44.97 0.73 -6.56 16 17 F -0.18 -5.33 16.77 44.97 0.75 -4.58 16 18 F -0.18 -8.05 14.67 44.97 0.66 -7.39 16 19 C 0.17 6.91 2.24 45.07 0.10 7.01 16 20 H 0.04 1.68 7.78 -2.39 -0.02 1.66 16 21 N -0.72 -36.37 3.85 -322.57 -1.24 -37.61 16 22 C -0.25 -14.18 9.93 84.03 0.83 -13.34 16 23 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 25 N -0.96 -58.73 13.06 21.65 0.28 -58.45 16 26 Si 0.96 48.29 29.55 68.60 2.03 50.32 16 27 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 30 C 0.11 4.27 6.03 86.36 0.52 4.79 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 0.95 8.07 -2.39 -0.02 0.93 16 34 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.21 1.15 6.97 -2.91 -0.02 1.13 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 1.50 4.60 -2.38 -0.01 1.49 16 38 H 0.12 1.65 7.76 -2.39 -0.02 1.63 16 39 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 40 H 0.38 20.19 6.54 -92.71 -0.61 19.58 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.05 2.56 7.00 -2.39 -0.02 2.54 16 43 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -84.26 360.57 4.85 -79.42 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.35 Total: 18.02 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 5.65 Total: 18.89 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.55 Total: -121.29 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.84 kcal Atomic # 9 Polarization: -20.67 SS G_CDS: 2.15 Total: -18.52 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -84.26 4.85 -79.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998314670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.220 kcal (2) G-P(sol) polarization free energy of solvation -84.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds