Wall clock time and date at job start Wed Apr 1 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 108.58259 * 2 1 4 4 C 1.50707 * 109.47177 * 61.53592 * 3 2 1 5 5 O 1.21275 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99764 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63636 * 0.02562 * 6 4 3 8 8 C 1.53189 * 108.77554 * 126.41191 * 7 6 4 9 9 C 1.53038 * 109.31621 * 54.63783 * 8 7 6 10 10 C 1.53046 * 109.53758 * 298.63682 * 9 8 7 11 11 H 1.09003 * 109.49538 * 301.38002 * 10 9 8 12 12 N 1.46496 * 109.49635 * 181.31055 * 10 9 8 13 13 C 1.36945 * 119.99718 * 85.00093 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.46928 * 120.63060 * 180.02562 * 6 4 3 22 22 C 1.53200 * 108.51057 * 242.07857 * 2 1 3 23 23 C 1.55566 * 106.23845 * 211.43994 * 22 2 1 24 24 S 1.83903 * 99.64211 * 36.98890 * 23 22 2 25 25 O 1.42094 * 111.46735 * 215.91290 * 24 23 22 26 26 O 1.42099 * 111.61543 * 75.89702 * 24 23 22 27 27 N 1.46457 * 108.64583 * 117.99290 * 2 1 3 28 28 H 1.09001 * 109.46691 * 60.70688 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.69796 * 1 2 3 30 30 H 1.08998 * 109.47248 * 300.70312 * 1 2 3 31 31 H 1.09000 * 109.47145 * 301.54408 * 3 2 1 32 32 H 1.09000 * 109.47662 * 181.54410 * 3 2 1 33 33 H 1.09004 * 109.58457 * 6.62765 * 7 6 4 34 34 H 1.08997 * 109.70482 * 246.27386 * 7 6 4 35 35 H 1.09003 * 109.49746 * 294.68802 * 8 7 6 36 36 H 1.09001 * 109.49692 * 174.59282 * 8 7 6 37 37 H 1.08992 * 109.46437 * 178.61223 * 9 8 7 38 38 H 1.09004 * 109.44346 * 58.64541 * 9 8 7 39 39 H 0.96996 * 120.00499 * 264.99824 * 12 10 9 40 40 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.58847 * 113.79999 * 21 6 4 42 42 H 1.09005 * 109.58227 * 353.37268 * 21 6 4 43 43 H 1.08999 * 110.09594 * 330.62821 * 22 2 1 44 44 H 1.08995 * 110.10331 * 92.24825 * 22 2 1 45 45 H 1.08997 * 111.37143 * 279.38272 * 23 22 2 46 46 H 1.08999 * 111.40737 * 154.60560 * 23 22 2 47 47 H 0.96999 * 126.08288 * 302.61810 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.5358 2.1422 1.2491 5 8 0.8686 1.5351 2.0597 6 7 1.8464 3.4357 1.4653 7 6 2.6533 4.1847 0.4923 8 6 1.9015 5.4630 0.1083 9 6 1.5572 6.2480 1.3760 10 6 0.6473 5.4027 2.2703 11 1 -0.2591 5.1417 1.7239 12 7 0.2929 6.1668 3.4689 13 6 -0.7648 7.0361 3.4387 14 1 -1.3373 7.1587 2.5313 15 6 -1.1009 7.7598 4.5745 16 7 -0.4028 7.6108 5.6804 17 14 -2.5432 8.9462 4.5333 18 1 -2.0667 10.2906 4.1201 19 1 -3.5563 8.4602 3.5623 20 1 -3.1533 9.0309 5.8845 21 6 1.3845 4.1238 2.6785 22 6 2.0164 -0.6803 -1.2836 23 6 3.3629 -1.3724 -0.9258 24 16 2.9762 -1.9342 0.7820 25 8 4.1151 -1.8504 1.6275 26 8 2.1264 -3.0731 0.7786 27 7 1.9983 -0.6513 1.2253 28 1 -0.3633 0.5028 -0.8963 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 1.6238 1.9659 -0.8758 32 1 3.1071 1.4673 -0.0277 33 1 2.8137 3.5741 -0.3963 34 1 3.6146 4.4451 0.9351 35 1 0.9836 5.2010 -0.4179 36 1 2.5305 6.0744 -0.5388 37 1 1.0439 7.1702 1.1040 38 1 2.4741 6.4880 1.9145 39 1 0.8073 6.0570 4.2838 40 1 -0.6375 8.1168 6.4740 41 1 2.2410 4.3794 3.3022 42 1 0.7077 3.4731 3.2324 43 1 1.2894 -1.4228 -1.6126 44 1 2.1734 0.0631 -2.0652 45 1 4.1890 -0.6614 -0.9325 46 1 3.5640 -2.2164 -1.5856 47 1 1.7805 -0.3858 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000789033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:02 Heat of formation + Delta-G solvation = -83.768575 kcal Electronic energy + Delta-G solvation = -29608.972477 eV Core-core repulsion = 25533.415554 eV Total energy + Delta-G solvation = -4075.556923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63148 -38.66015 -37.31933 -36.94541 -36.08523 -34.57409 -32.35222 -32.10188 -31.40040 -30.78457 -28.96190 -27.72512 -25.12807 -24.48423 -23.71695 -22.11965 -21.10510 -20.08510 -19.76251 -18.95492 -17.81785 -17.24368 -17.05933 -16.78075 -16.05059 -15.73531 -15.47644 -15.09338 -14.74981 -14.63758 -14.23685 -14.14078 -13.79648 -13.71461 -13.57678 -13.35783 -13.07614 -12.98636 -12.76546 -12.39138 -12.36078 -12.29743 -12.20638 -12.09244 -11.79353 -11.53806 -11.29649 -11.08731 -11.00117 -10.93348 -10.85646 -10.69916 -10.45936 -10.39709 -10.10336 -9.76978 -9.64346 -9.56089 -8.95212 -8.46770 -7.03048 -5.81311 -3.11297 -0.01338 2.36532 2.63327 2.99545 3.33299 3.40559 3.46005 3.47791 3.57624 3.82276 4.06826 4.22627 4.47839 4.54998 4.56689 4.77130 4.83708 4.94576 5.03647 5.05592 5.08058 5.18014 5.23103 5.32971 5.40385 5.46359 5.51688 5.61504 5.70247 5.73018 5.75450 5.88294 5.96405 6.09516 6.16680 6.31641 6.33782 6.49189 6.63328 6.81787 6.98565 7.11348 7.50750 7.65290 8.23111 8.36655 9.47759 10.02780 10.37490 11.41081 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002456 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.483989 B =11395.766414 C =11740.085668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.158 3.842 3 C -0.149 4.149 4 C 0.518 3.482 5 O -0.536 6.536 6 N -0.603 5.603 7 C 0.106 3.894 8 C -0.133 4.133 9 C -0.138 4.138 10 C 0.169 3.831 11 H 0.049 0.951 12 N -0.721 5.721 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.282 1.282 20 H -0.291 1.291 21 C 0.105 3.895 22 C -0.116 4.116 23 C -0.596 4.596 24 S 2.564 3.436 25 O -0.963 6.963 26 O -0.955 6.955 27 N -1.077 6.077 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -15.698 -19.884 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.067 3.933 3 C -0.191 4.191 4 C 0.306 3.694 5 O -0.414 6.414 6 N -0.336 5.336 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.179 4.179 10 C 0.058 3.942 11 H 0.067 0.933 12 N -0.362 5.362 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.207 1.207 20 H -0.217 1.217 21 C -0.018 4.018 22 C -0.156 4.156 23 C -0.726 4.726 24 S 2.658 3.342 25 O -0.952 6.952 26 O -0.944 6.944 27 N -0.847 5.847 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 9.605 -16.772 -18.934 27.056 hybrid contribution -0.619 1.568 0.045 1.687 sum 8.986 -15.203 -18.890 25.859 Atomic orbital electron populations 1.22479 0.92489 1.03380 1.04383 1.20268 0.97197 0.91695 0.84110 1.22289 1.02986 0.95873 0.97963 1.20363 0.79774 0.81471 0.87801 1.90574 1.39235 1.64363 1.47250 1.48141 1.52438 1.10391 1.22658 1.21788 0.94351 0.93684 0.91877 1.21934 1.00247 0.95930 0.99101 1.22295 1.00793 0.99759 0.95032 1.20456 0.94925 0.89201 0.89596 0.93289 1.42313 1.36453 1.48291 1.09167 1.19186 1.05800 1.15442 0.96698 0.91187 1.24754 0.99550 1.00616 0.95857 1.69662 1.41700 1.44930 1.01608 0.86188 0.82121 0.81042 0.76801 1.21710 1.20740 1.21718 1.22011 0.99322 0.94831 0.85591 1.22536 0.93806 1.01868 0.97355 1.30803 1.05686 1.12023 1.24128 1.06553 0.75082 0.74645 0.77957 1.93615 1.51693 1.86532 1.63355 1.93652 1.65746 1.48951 1.86056 1.55131 1.67009 1.49428 1.13167 0.92110 0.91798 0.88650 0.87764 0.88532 0.90340 0.91280 0.91856 0.91341 0.91568 0.92483 0.78184 0.93414 0.91721 0.88793 0.88002 0.86915 0.84069 0.84193 0.71090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.17 37.16 0.30 -1.22 16 2 C 0.16 1.22 0.83 -131.74 -0.11 1.11 16 3 C -0.15 -1.11 3.01 -27.88 -0.08 -1.20 16 4 C 0.52 6.39 7.18 -10.98 -0.08 6.31 16 5 O -0.54 -8.29 11.21 5.56 0.06 -8.23 16 6 N -0.60 -7.75 2.97 -172.79 -0.51 -8.26 16 7 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 8 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 9 C -0.14 -2.21 5.47 -26.69 -0.15 -2.35 16 10 C 0.17 3.20 2.92 -67.83 -0.20 3.00 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 N -0.72 -17.54 5.12 -53.33 -0.27 -17.81 16 13 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.11 1.75 5.90 -3.73 -0.02 1.73 16 22 C -0.12 -0.50 5.56 -25.26 -0.14 -0.64 16 23 C -0.60 -2.50 7.66 38.52 0.29 -2.21 16 24 S 2.56 23.92 6.47 -107.50 -0.70 23.23 16 25 O -0.96 -12.59 18.14 -57.40 -1.04 -13.64 16 26 O -0.95 -12.10 18.14 -57.40 -1.04 -13.14 16 27 N -1.08 -10.76 5.64 0.60 0.00 -10.76 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.17 5.55 -51.93 -0.29 0.88 16 31 H 0.10 0.53 7.64 -51.93 -0.40 0.13 16 32 H 0.10 0.53 7.95 -51.93 -0.41 0.12 16 33 H 0.08 0.49 5.93 -51.93 -0.31 0.18 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.77 7.01 -51.93 -0.36 1.41 16 43 H 0.10 0.38 7.82 -51.93 -0.41 -0.03 16 44 H 0.11 0.20 7.74 -51.93 -0.40 -0.20 16 45 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.44 5.23 7.07 -40.36 -0.29 4.94 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -36.89 376.33 -10.11 -47.00 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.37 Total: 9.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.61 Total: -3.20 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.06 Total: -63.90 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -2.02 Total: -35.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 23.92 SS G_CDS: -0.70 Total: 23.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.89 -10.11 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000789033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.766 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds