Wall clock time and date at job start Wed Apr 1 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 108.58259 * 2 1 4 4 C 1.50707 * 109.47177 * 61.53592 * 3 2 1 5 5 O 1.21275 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99764 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63636 * 0.02562 * 6 4 3 8 8 C 1.53189 * 108.77554 * 126.41191 * 7 6 4 9 9 C 1.53038 * 109.31621 * 54.63783 * 8 7 6 10 10 C 1.53046 * 109.53758 * 298.63682 * 9 8 7 11 11 H 1.09003 * 109.49538 * 301.38002 * 10 9 8 12 12 N 1.46496 * 109.49635 * 181.31055 * 10 9 8 13 13 C 1.36945 * 119.99718 * 85.00093 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.46928 * 120.63060 * 180.02562 * 6 4 3 22 22 C 1.53200 * 108.51057 * 242.07857 * 2 1 3 23 23 C 1.55566 * 106.23845 * 211.43994 * 22 2 1 24 24 S 1.83903 * 99.64211 * 36.98890 * 23 22 2 25 25 O 1.42094 * 111.46735 * 215.91290 * 24 23 22 26 26 O 1.42099 * 111.61543 * 75.89702 * 24 23 22 27 27 N 1.46457 * 108.64583 * 117.99290 * 2 1 3 28 28 H 1.09001 * 109.46691 * 60.70688 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.69796 * 1 2 3 30 30 H 1.08998 * 109.47248 * 300.70312 * 1 2 3 31 31 H 1.09000 * 109.47145 * 301.54408 * 3 2 1 32 32 H 1.09000 * 109.47662 * 181.54410 * 3 2 1 33 33 H 1.09004 * 109.58457 * 6.62765 * 7 6 4 34 34 H 1.08997 * 109.70482 * 246.27386 * 7 6 4 35 35 H 1.09003 * 109.49746 * 294.68802 * 8 7 6 36 36 H 1.09001 * 109.49692 * 174.59282 * 8 7 6 37 37 H 1.08992 * 109.46437 * 178.61223 * 9 8 7 38 38 H 1.09004 * 109.44346 * 58.64541 * 9 8 7 39 39 H 0.96996 * 120.00499 * 264.99824 * 12 10 9 40 40 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.58847 * 113.79999 * 21 6 4 42 42 H 1.09005 * 109.58227 * 353.37268 * 21 6 4 43 43 H 1.08999 * 110.09594 * 330.62821 * 22 2 1 44 44 H 1.08995 * 110.10331 * 92.24825 * 22 2 1 45 45 H 1.08997 * 111.37143 * 279.38272 * 23 22 2 46 46 H 1.08999 * 111.40737 * 154.60560 * 23 22 2 47 47 H 0.96999 * 126.08288 * 302.61810 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0176 1.4502 0.0000 4 6 1.5358 2.1422 1.2491 5 8 0.8686 1.5351 2.0597 6 7 1.8464 3.4357 1.4653 7 6 2.6533 4.1847 0.4923 8 6 1.9015 5.4630 0.1083 9 6 1.5572 6.2480 1.3760 10 6 0.6473 5.4027 2.2703 11 1 -0.2591 5.1417 1.7239 12 7 0.2929 6.1668 3.4689 13 6 -0.7648 7.0361 3.4387 14 1 -1.3373 7.1587 2.5313 15 6 -1.1009 7.7598 4.5745 16 7 -0.4028 7.6108 5.6804 17 14 -2.5432 8.9462 4.5333 18 1 -2.0667 10.2906 4.1201 19 1 -3.5563 8.4602 3.5623 20 1 -3.1533 9.0309 5.8845 21 6 1.3845 4.1238 2.6785 22 6 2.0164 -0.6803 -1.2836 23 6 3.3629 -1.3724 -0.9258 24 16 2.9762 -1.9342 0.7820 25 8 4.1151 -1.8504 1.6275 26 8 2.1264 -3.0731 0.7786 27 7 1.9983 -0.6513 1.2253 28 1 -0.3633 0.5028 -0.8963 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 1.6238 1.9659 -0.8758 32 1 3.1071 1.4673 -0.0277 33 1 2.8137 3.5741 -0.3963 34 1 3.6146 4.4451 0.9351 35 1 0.9836 5.2010 -0.4179 36 1 2.5305 6.0744 -0.5388 37 1 1.0439 7.1702 1.1040 38 1 2.4741 6.4880 1.9145 39 1 0.8073 6.0570 4.2838 40 1 -0.6375 8.1168 6.4740 41 1 2.2410 4.3794 3.3022 42 1 0.7077 3.4731 3.2324 43 1 1.2894 -1.4228 -1.6126 44 1 2.1734 0.0631 -2.0652 45 1 4.1890 -0.6614 -0.9325 46 1 3.5640 -2.2164 -1.5856 47 1 1.7805 -0.3858 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000789033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:01 Heat of formation + Delta-G solvation = -114.843034 kcal Electronic energy + Delta-G solvation = -29610.319966 eV Core-core repulsion = 25533.415554 eV Total energy + Delta-G solvation = -4076.904412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50955 -39.54283 -38.22091 -37.87437 -36.88175 -36.18302 -33.87616 -32.76989 -32.53623 -31.63980 -30.24246 -28.75024 -26.24515 -25.67618 -24.81111 -23.33828 -21.93253 -21.17157 -20.44221 -20.03031 -19.13336 -18.52637 -17.96209 -17.50776 -16.81884 -16.74113 -16.47516 -16.39822 -15.79435 -15.64260 -15.36553 -15.18056 -15.06050 -14.72709 -14.45315 -14.27095 -14.16270 -13.93236 -13.62649 -13.50318 -13.19247 -13.11278 -13.03837 -12.95290 -12.85298 -12.56758 -12.51063 -12.33276 -12.19857 -12.13295 -12.08622 -11.84608 -11.78429 -11.67591 -11.51448 -11.35417 -10.91624 -10.53694 -10.30346 -9.57714 -9.03584 -7.97380 -5.26928 -0.62378 1.44694 1.46785 1.55018 1.70642 1.76966 2.03793 2.54903 2.75176 3.10553 3.35772 3.38214 3.57976 3.66317 3.75391 3.85186 4.03453 4.07817 4.16325 4.18740 4.33030 4.37138 4.39737 4.52595 4.65288 4.68802 4.72975 4.75480 4.83008 4.87503 4.90707 4.92614 4.99039 5.09531 5.12110 5.20719 5.33223 5.42737 5.44030 5.54344 5.59802 5.65647 6.24347 6.25591 6.57911 7.29824 7.31805 8.04116 8.27161 9.26064 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002456 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.483989 B =11395.766414 C =11740.085668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.149 3.851 3 C -0.143 4.143 4 C 0.505 3.495 5 O -0.578 6.578 6 N -0.607 5.607 7 C 0.102 3.898 8 C -0.123 4.123 9 C -0.130 4.130 10 C 0.168 3.832 11 H 0.032 0.968 12 N -0.738 5.738 13 C -0.238 4.238 14 H 0.074 0.926 15 C -0.076 4.076 16 N -0.970 5.970 17 Si 0.973 3.027 18 H -0.284 1.284 19 H -0.270 1.270 20 H -0.297 1.297 21 C 0.119 3.881 22 C -0.114 4.114 23 C -0.545 4.545 24 S 2.539 3.461 25 O -1.014 7.014 26 O -1.006 7.006 27 N -1.090 6.090 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.174 0.826 46 H 0.174 0.826 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.456 -15.513 -25.378 31.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 C -0.184 4.184 4 C 0.296 3.704 5 O -0.459 6.459 6 N -0.339 5.339 7 C -0.019 4.019 8 C -0.162 4.162 9 C -0.170 4.170 10 C 0.059 3.941 11 H 0.050 0.950 12 N -0.378 5.378 13 C -0.369 4.369 14 H 0.092 0.908 15 C -0.268 4.268 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.211 1.211 19 H -0.195 1.195 20 H -0.224 1.224 21 C -0.006 4.006 22 C -0.152 4.152 23 C -0.681 4.681 24 S 2.640 3.360 25 O -1.004 7.004 26 O -0.995 6.995 27 N -0.857 5.857 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.179 0.821 45 H 0.192 0.808 46 H 0.192 0.808 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 11.236 -16.632 -24.472 31.651 hybrid contribution -1.151 1.471 1.678 2.511 sum 10.085 -15.162 -22.794 29.174 Atomic orbital electron populations 1.22445 0.94187 1.02498 1.03643 1.20626 0.96135 0.92592 0.84795 1.22467 1.05036 0.94900 0.96025 1.21484 0.78849 0.80957 0.89122 1.90588 1.40952 1.65205 1.49113 1.48242 1.52906 1.10946 1.21838 1.22126 0.93531 0.93342 0.92898 1.21894 1.01388 0.96454 0.96470 1.22088 0.99180 0.98830 0.96925 1.20636 0.95204 0.90193 0.88070 0.95008 1.42536 1.35985 1.48691 1.10565 1.19544 1.05908 1.14930 0.96566 0.90800 1.25573 1.02539 1.02996 0.95729 1.69823 1.43653 1.46424 1.02154 0.85148 0.79188 0.79008 0.76471 1.21063 1.19522 1.22383 1.21470 0.98163 0.93375 0.87551 1.22732 0.93434 1.03129 0.95954 1.30605 1.06951 1.13592 1.16904 1.07045 0.73981 0.74103 0.80841 1.93543 1.52734 1.86927 1.67160 1.93583 1.66757 1.51331 1.87847 1.55195 1.67462 1.49522 1.13487 0.89465 0.92726 0.92734 0.83618 0.85130 0.85036 0.90447 0.91500 0.88064 0.93889 0.93060 0.79676 0.94020 0.92265 0.92259 0.87231 0.82078 0.80787 0.80834 0.72816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.17 71.98 0.59 -2.24 16 2 C 0.15 1.81 0.83 3.68 0.00 1.81 16 3 C -0.14 -1.39 3.01 29.85 0.09 -1.30 16 4 C 0.51 11.67 7.18 87.66 0.63 12.29 16 5 O -0.58 -18.71 11.21 -3.01 -0.03 -18.75 16 6 N -0.61 -14.55 2.97 -818.98 -2.43 -16.98 16 7 C 0.10 1.49 6.34 86.36 0.55 2.03 16 8 C -0.12 -2.27 6.08 30.67 0.19 -2.08 16 9 C -0.13 -4.06 5.47 30.62 0.17 -3.89 16 10 C 0.17 6.54 2.92 45.06 0.13 6.68 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 N -0.74 -37.57 5.12 -322.63 -1.65 -39.22 16 13 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 14 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 16 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 17 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 21 C 0.12 4.12 5.90 86.35 0.51 4.63 16 22 C -0.11 -0.25 5.56 31.55 0.18 -0.07 16 23 C -0.54 -1.34 7.66 72.87 0.56 -0.78 16 24 S 2.54 45.71 6.47 -56.49 -0.37 45.34 16 25 O -1.01 -27.18 18.14 -127.79 -2.32 -29.49 16 26 O -1.01 -26.44 18.14 -127.79 -2.32 -28.76 16 27 N -1.09 -21.49 5.64 -152.02 -0.86 -22.34 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.39 5.55 -2.39 -0.01 1.38 16 31 H 0.15 0.29 7.64 -2.39 -0.02 0.27 16 32 H 0.13 0.48 7.95 -2.39 -0.02 0.46 16 33 H 0.13 0.60 5.93 -2.38 -0.01 0.58 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 2.44 7.01 -2.38 -0.02 2.42 16 43 H 0.11 0.20 7.82 -2.39 -0.02 0.18 16 44 H 0.16 -0.99 7.74 -2.39 -0.02 -1.01 16 45 H 0.17 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.17 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.43 11.03 7.07 -93.00 -0.66 10.37 16 Total: -1.00 -91.77 376.33 -3.17 -94.94 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.39 Total: 25.93 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.89 Total: 0.68 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -4.66 Total: -138.40 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -4.67 Total: -77.00 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 45.71 SS G_CDS: -0.37 Total: 45.34 kcal Total: -91.77 -3.17 -94.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000789033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -91.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds