Wall clock time and date at job start Wed Apr 1 2020 03:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29862 * 124.83444 * 2 1 4 4 C 1.36132 * 108.76746 * 179.97438 * 3 2 1 5 5 C 1.39269 * 133.76614 * 180.29738 * 4 3 2 6 6 C 1.39190 * 119.46715 * 180.19038 * 5 4 3 7 7 C 1.47714 * 119.95113 * 179.75029 * 6 5 4 8 8 O 1.21572 * 119.99925 * 359.73453 * 7 6 5 9 9 N 1.34773 * 119.99983 * 179.45226 * 7 6 5 10 10 C 1.46503 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47080 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.51353 * 304.99964 * 11 10 9 13 13 C 1.53295 * 109.51284 * 184.89343 * 11 10 9 14 14 N 1.47149 * 108.38459 * 187.77590 * 13 11 10 15 15 C 1.36944 * 120.98108 * 230.55701 * 14 13 11 16 16 H 1.08004 * 119.99350 * 26.24235 * 15 14 13 17 17 C 1.38806 * 120.00193 * 206.24393 * 15 14 13 18 18 N 1.31615 * 120.00079 * 16.90032 * 17 15 14 19 19 Si 1.86799 * 120.00085 * 196.90923 * 17 15 14 20 20 H 1.48503 * 109.47444 * 59.99507 * 19 17 15 21 21 H 1.48497 * 109.47451 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46960 * 300.00073 * 19 17 15 23 23 C 1.47148 * 118.03701 * 50.53661 * 14 13 11 24 24 C 1.53296 * 108.38459 * 309.46255 * 23 14 13 25 25 O 1.42958 * 109.26248 * 52.28222 * 24 23 14 26 26 C 1.40045 * 120.09465 * 359.48437 * 6 5 4 27 27 C 1.36527 * 120.47506 * 0.24352 * 26 6 5 28 28 C 1.38900 * 120.19119 * 0.03111 * 27 26 6 29 29 O 1.34241 * 124.83182 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47711 * 299.97743 * 1 2 3 32 32 H 1.09008 * 109.46962 * 59.97992 * 1 2 3 33 33 H 1.08002 * 120.26371 * 359.94592 * 5 4 3 34 34 H 0.97009 * 119.99999 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.46889 * 299.99799 * 10 9 7 36 36 H 1.08997 * 109.47499 * 59.99974 * 10 9 7 37 37 H 1.09002 * 109.67940 * 307.50184 * 13 11 10 38 38 H 1.09002 * 109.67827 * 68.01095 * 13 11 10 39 39 H 0.96996 * 120.00532 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.67889 * 69.19152 * 23 14 13 41 41 H 1.09004 * 109.67931 * 189.70319 * 23 14 13 42 42 H 1.09002 * 109.51066 * 172.22230 * 24 23 14 43 43 H 1.08991 * 109.51508 * 292.37792 * 24 23 14 44 44 H 1.07998 * 119.76200 * 180.27320 * 26 6 5 45 45 H 1.07999 * 119.90615 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0659 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7610 1.3890 0.0061 6 6 5.9619 0.6854 0.0009 7 6 7.2452 1.4169 0.0010 8 8 7.2519 2.6326 0.0008 9 7 8.4087 0.7366 0.0072 10 6 9.6815 1.4621 0.0079 11 6 10.8389 0.4614 0.0160 12 1 10.7262 -0.2187 0.8602 13 6 12.1674 1.2161 0.1400 14 7 13.2662 0.2545 -0.0427 15 6 14.2965 0.1823 0.8565 16 1 14.1408 0.4852 1.8815 17 6 15.5408 -0.2800 0.4507 18 7 15.8373 -0.3332 -0.8305 19 14 16.7944 -0.8270 1.7229 20 1 16.2358 -1.9505 2.5173 21 1 18.0331 -1.2743 1.0369 22 1 17.1107 0.3085 2.6262 23 6 13.2249 -0.6275 -1.2198 24 6 11.8449 -1.2924 -1.2776 25 8 10.8328 -0.2856 -1.2031 26 6 5.9553 -0.7150 0.0011 27 6 4.7754 -1.4019 0.0014 28 6 3.5678 -0.7157 0.0009 29 8 2.2737 -1.1019 0.0005 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8899 33 1 4.7628 2.4690 0.0103 34 1 8.4033 -0.2335 0.0118 35 1 9.7452 2.0847 -0.8845 36 1 9.7402 2.0920 0.8954 37 1 12.2239 1.9883 -0.6273 38 1 12.2390 1.6733 1.1269 39 1 16.7069 -0.6559 -1.1141 40 1 13.3880 -0.0409 -2.1238 41 1 13.9977 -1.3914 -1.1334 42 1 11.7441 -1.8412 -2.2140 43 1 11.7364 -1.9795 -0.4385 44 1 6.8903 -1.2556 0.0016 45 1 4.7811 -2.4819 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035409074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:56 Heat of formation + Delta-G solvation = -12.761463 kcal Electronic energy + Delta-G solvation = -28972.244163 eV Core-core repulsion = 24764.322388 eV Total energy + Delta-G solvation = -4207.921775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.69463 -40.16119 -38.62421 -37.74813 -35.34412 -35.00087 -34.34565 -32.32089 -31.57466 -31.22237 -30.66404 -28.70604 -27.47307 -25.73454 -24.18735 -23.20661 -22.82409 -22.01950 -21.86750 -21.03221 -19.77992 -18.54715 -17.97087 -17.30227 -17.09139 -16.69772 -16.08942 -16.01861 -15.20448 -14.97807 -14.86931 -14.58332 -14.44441 -14.17406 -14.10361 -13.79721 -13.78889 -13.48094 -13.28128 -13.15455 -13.07441 -12.88911 -12.71673 -12.31232 -11.98149 -11.69275 -11.59889 -11.15538 -10.90249 -10.87352 -10.77266 -10.45295 -10.32550 -10.13677 -10.00735 -9.70461 -9.29536 -9.12324 -9.00049 -8.92974 -8.57868 -6.79760 -5.88012 -3.31857 0.27902 0.39310 1.93002 1.99992 2.61968 2.94996 3.32661 3.38611 3.39105 3.40941 3.46926 4.03751 4.17409 4.37661 4.41147 4.48998 4.57220 4.59867 4.80933 4.87397 4.93496 5.06813 5.11549 5.29361 5.39232 5.43255 5.47500 5.59159 5.72199 5.75222 5.77890 5.79239 5.82966 5.98203 6.07080 6.10287 6.23388 6.32299 6.43144 6.44599 6.71373 7.05813 7.15337 7.43273 7.47807 7.66711 7.80074 8.11362 8.29504 9.07482 9.70153 10.26759 11.20138 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.001806 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.919562 B =15503.350341 C =15804.051309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.246 3.754 3 N -0.474 5.474 4 C 0.013 3.987 5 C 0.004 3.996 6 C -0.130 4.130 7 C 0.559 3.441 8 O -0.536 6.536 9 N -0.712 5.712 10 C 0.130 3.870 11 C 0.064 3.936 12 H 0.059 0.941 13 C 0.122 3.878 14 N -0.593 5.593 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.390 6.390 26 C -0.062 4.062 27 C -0.095 4.095 28 C 0.027 3.973 29 O -0.212 6.212 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.402 0.598 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.256 0.744 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.147 0.853 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.878 -4.393 1.162 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 N -0.204 5.204 4 C -0.098 4.098 5 C -0.015 4.015 6 C -0.135 4.135 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.364 5.364 10 C 0.006 3.994 11 C 0.004 3.996 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.317 5.317 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.309 6.309 26 C -0.081 4.081 27 C -0.114 4.114 28 C -0.024 4.024 29 O -0.104 6.104 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.985 -2.916 0.941 28.152 hybrid contribution 1.237 -1.589 0.712 2.136 sum -26.748 -4.505 1.652 27.175 Atomic orbital electron populations 1.20436 0.80626 1.05322 1.05705 1.26543 0.96726 0.78108 0.95180 1.70642 1.00725 1.28899 1.20102 1.19721 0.92104 0.91187 1.06755 1.20408 0.87239 1.01200 0.92685 1.19808 0.93541 0.93529 1.06605 1.17953 0.83413 0.87116 0.76940 1.90801 1.87498 1.13191 1.49949 1.45852 1.05553 1.10678 1.74286 1.21486 0.80290 0.94313 1.03269 1.22819 0.95464 0.93549 0.87747 0.92274 1.21438 0.87088 0.92032 1.00013 1.44053 1.22727 1.37975 1.26952 1.19157 0.88435 1.40999 0.90066 0.91355 1.25045 0.96705 1.01855 0.95958 1.70017 1.21810 1.49318 1.13508 0.86317 0.80548 0.78871 0.80714 1.20989 1.21539 1.20768 1.21448 0.93127 0.94733 0.89371 1.23328 0.90559 0.89734 1.00198 1.87792 1.54605 1.50594 1.37933 1.20919 0.97896 0.92882 0.96357 1.19528 0.86927 1.00724 1.04183 1.20518 0.83913 0.94498 1.03498 1.84492 1.15289 1.36372 1.74258 0.88845 0.87828 0.87818 0.83074 0.76195 0.90325 0.89800 0.95157 0.91710 0.93408 0.95342 0.88748 0.90014 0.94089 0.83569 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.25 2.14 8.23 -13.11 -0.11 2.03 16 3 N -0.47 -5.49 11.34 -8.72 -0.10 -5.59 16 4 C 0.01 0.16 7.23 -84.72 -0.61 -0.45 16 5 C 0.00 0.05 9.64 -38.84 -0.37 -0.32 16 6 C -0.13 -1.49 5.87 -105.00 -0.62 -2.10 16 7 C 0.56 7.64 7.77 -12.39 -0.10 7.54 16 8 O -0.54 -9.15 16.33 5.30 0.09 -9.06 16 9 N -0.71 -8.95 5.45 -61.29 -0.33 -9.28 16 10 C 0.13 1.87 5.35 -4.04 -0.02 1.85 16 11 C 0.06 1.06 2.81 -26.58 -0.07 0.99 16 12 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.12 2.45 6.02 -3.54 -0.02 2.43 16 14 N -0.59 -14.46 3.05 -171.83 -0.52 -14.98 16 15 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 16 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 17 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 18 N -0.90 -25.57 11.14 55.49 0.62 -24.95 16 19 Si 0.91 21.11 29.59 -169.99 -5.03 16.08 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.14 3.22 5.45 -3.54 -0.02 3.20 16 24 C 0.04 0.73 6.98 37.31 0.26 0.99 16 25 O -0.39 -6.93 10.33 -35.23 -0.36 -7.30 16 26 C -0.06 -0.54 9.47 -39.52 -0.37 -0.91 16 27 C -0.09 -0.81 9.99 -39.95 -0.40 -1.21 16 28 C 0.03 0.28 7.43 -38.49 -0.29 0.00 16 29 O -0.21 -2.07 10.77 3.81 0.04 -2.03 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.15 1.87 7.64 -52.49 -0.40 1.47 16 34 H 0.40 4.18 6.48 -40.82 -0.26 3.92 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.15 0.92 6.37 -52.49 -0.33 0.59 16 45 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -33.99 376.92 -8.45 -42.44 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.93 Total: 1.80 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.60 Total: 7.20 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.34 Total: -54.80 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.24 Total: -18.39 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.99 -8.45 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035409074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.679 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds