Wall clock time and date at job start Wed Apr 1 2020 03:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29862 * 124.83444 * 2 1 4 4 C 1.36132 * 108.76746 * 179.97438 * 3 2 1 5 5 C 1.39269 * 133.76614 * 180.29738 * 4 3 2 6 6 C 1.39190 * 119.46715 * 180.19038 * 5 4 3 7 7 C 1.47714 * 119.95113 * 179.75029 * 6 5 4 8 8 O 1.21572 * 119.99925 * 359.73453 * 7 6 5 9 9 N 1.34773 * 119.99983 * 179.45226 * 7 6 5 10 10 C 1.46503 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47080 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.51353 * 304.99964 * 11 10 9 13 13 C 1.53295 * 109.51284 * 184.89343 * 11 10 9 14 14 N 1.47149 * 108.38459 * 187.77590 * 13 11 10 15 15 C 1.36944 * 120.98108 * 230.55701 * 14 13 11 16 16 H 1.08004 * 119.99350 * 26.24235 * 15 14 13 17 17 C 1.38806 * 120.00193 * 206.24393 * 15 14 13 18 18 N 1.31615 * 120.00079 * 16.90032 * 17 15 14 19 19 Si 1.86799 * 120.00085 * 196.90923 * 17 15 14 20 20 H 1.48503 * 109.47444 * 59.99507 * 19 17 15 21 21 H 1.48497 * 109.47451 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46960 * 300.00073 * 19 17 15 23 23 C 1.47148 * 118.03701 * 50.53661 * 14 13 11 24 24 C 1.53296 * 108.38459 * 309.46255 * 23 14 13 25 25 O 1.42958 * 109.26248 * 52.28222 * 24 23 14 26 26 C 1.40045 * 120.09465 * 359.48437 * 6 5 4 27 27 C 1.36527 * 120.47506 * 0.24352 * 26 6 5 28 28 C 1.38900 * 120.19119 * 0.03111 * 27 26 6 29 29 O 1.34241 * 124.83182 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47711 * 299.97743 * 1 2 3 32 32 H 1.09008 * 109.46962 * 59.97992 * 1 2 3 33 33 H 1.08002 * 120.26371 * 359.94592 * 5 4 3 34 34 H 0.97009 * 119.99999 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.46889 * 299.99799 * 10 9 7 36 36 H 1.08997 * 109.47499 * 59.99974 * 10 9 7 37 37 H 1.09002 * 109.67940 * 307.50184 * 13 11 10 38 38 H 1.09002 * 109.67827 * 68.01095 * 13 11 10 39 39 H 0.96996 * 120.00532 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.67889 * 69.19152 * 23 14 13 41 41 H 1.09004 * 109.67931 * 189.70319 * 23 14 13 42 42 H 1.09002 * 109.51066 * 172.22230 * 24 23 14 43 43 H 1.08991 * 109.51508 * 292.37792 * 24 23 14 44 44 H 1.07998 * 119.76200 * 180.27320 * 26 6 5 45 45 H 1.07999 * 119.90615 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0659 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7610 1.3890 0.0061 6 6 5.9619 0.6854 0.0009 7 6 7.2452 1.4169 0.0010 8 8 7.2519 2.6326 0.0008 9 7 8.4087 0.7366 0.0072 10 6 9.6815 1.4621 0.0079 11 6 10.8389 0.4614 0.0160 12 1 10.7262 -0.2187 0.8602 13 6 12.1674 1.2161 0.1400 14 7 13.2662 0.2545 -0.0427 15 6 14.2965 0.1823 0.8565 16 1 14.1408 0.4852 1.8815 17 6 15.5408 -0.2800 0.4507 18 7 15.8373 -0.3332 -0.8305 19 14 16.7944 -0.8270 1.7229 20 1 16.2358 -1.9505 2.5173 21 1 18.0331 -1.2743 1.0369 22 1 17.1107 0.3085 2.6262 23 6 13.2249 -0.6275 -1.2198 24 6 11.8449 -1.2924 -1.2776 25 8 10.8328 -0.2856 -1.2031 26 6 5.9553 -0.7150 0.0011 27 6 4.7754 -1.4019 0.0014 28 6 3.5678 -0.7157 0.0009 29 8 2.2737 -1.1019 0.0005 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8899 33 1 4.7628 2.4690 0.0103 34 1 8.4033 -0.2335 0.0118 35 1 9.7452 2.0847 -0.8845 36 1 9.7402 2.0920 0.8954 37 1 12.2239 1.9883 -0.6273 38 1 12.2390 1.6733 1.1269 39 1 16.7069 -0.6559 -1.1141 40 1 13.3880 -0.0409 -2.1238 41 1 13.9977 -1.3914 -1.1334 42 1 11.7441 -1.8412 -2.2140 43 1 11.7364 -1.9795 -0.4385 44 1 6.8903 -1.2556 0.0016 45 1 4.7811 -2.4819 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035409074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:55 Heat of formation + Delta-G solvation = -38.520841 kcal Electronic energy + Delta-G solvation = -28973.361173 eV Core-core repulsion = 24764.322388 eV Total energy + Delta-G solvation = -4209.038785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.41443 -41.22629 -40.07056 -38.65670 -36.54258 -36.07568 -35.81390 -33.43960 -32.91466 -32.20565 -31.91188 -29.60530 -28.91655 -27.19214 -25.29495 -24.84216 -23.63322 -23.20787 -22.71993 -22.08709 -21.35408 -19.52683 -18.86411 -18.72097 -18.01885 -17.76701 -17.42588 -17.06639 -16.88383 -16.25414 -16.02037 -15.95009 -15.49526 -15.34189 -15.10400 -15.01506 -14.80091 -14.58556 -14.38935 -14.15835 -14.14048 -13.85780 -13.43428 -13.39455 -13.21177 -12.99038 -12.72665 -12.64468 -12.52388 -12.37142 -12.18026 -12.08377 -11.85987 -11.65624 -11.37186 -11.18608 -10.78299 -10.52863 -10.30021 -9.93664 -9.66336 -8.74463 -7.90453 -5.37717 -0.47853 -0.40598 1.23728 1.35369 1.48203 1.49614 1.56803 1.66856 1.93017 2.48623 2.58929 2.75225 2.80809 3.24672 3.28671 3.48355 3.55802 3.82004 3.87520 3.93019 4.03190 4.07740 4.16534 4.26999 4.49771 4.54103 4.56901 4.61550 4.62654 4.64227 4.73869 4.78131 4.80062 4.89941 4.92410 5.00709 5.04002 5.08245 5.20906 5.26085 5.27442 5.37561 5.57037 5.62794 6.26681 6.34186 6.42577 6.45180 7.07173 7.07856 7.75470 8.28690 9.15352 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029974 B = 0.001806 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.919562 B =15503.350341 C =15804.051309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.257 3.743 3 N -0.516 5.516 4 C -0.008 4.008 5 C -0.015 4.015 6 C -0.135 4.135 7 C 0.561 3.439 8 O -0.578 6.578 9 N -0.700 5.700 10 C 0.140 3.860 11 C 0.079 3.921 12 H 0.075 0.925 13 C 0.115 3.885 14 N -0.612 5.612 15 C -0.267 4.267 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.277 1.277 23 C 0.141 3.859 24 C 0.055 3.945 25 O -0.389 6.389 26 C -0.055 4.055 27 C -0.082 4.082 28 C 0.016 3.984 29 O -0.214 6.214 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.016 0.984 38 H 0.073 0.927 39 H 0.251 0.749 40 H -0.003 1.003 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.177 0.823 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.883 -6.781 2.170 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.046 3.954 3 N -0.246 5.246 4 C -0.119 4.119 5 C -0.035 4.035 6 C -0.139 4.139 7 C 0.349 3.651 8 O -0.459 6.459 9 N -0.352 5.352 10 C 0.015 3.985 11 C 0.020 3.980 12 H 0.093 0.907 13 C -0.011 4.011 14 N -0.336 5.336 15 C -0.397 4.397 16 H 0.091 0.909 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.203 1.203 23 C 0.016 3.984 24 C -0.023 4.023 25 O -0.308 6.308 26 C -0.073 4.073 27 C -0.101 4.101 28 C -0.035 4.035 29 O -0.106 6.106 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.194 0.806 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -30.024 -5.322 1.959 30.555 hybrid contribution 1.757 -0.790 0.383 1.964 sum -28.267 -6.112 2.342 29.015 Atomic orbital electron populations 1.20795 0.76928 1.07347 1.06966 1.27644 0.98323 0.77209 0.92270 1.70643 1.00979 1.30463 1.22517 1.19880 0.92284 0.92264 1.07445 1.20326 0.88120 1.00625 0.94451 1.19653 0.91866 0.94713 1.07698 1.18251 0.84199 0.86675 0.75929 1.90781 1.88068 1.15110 1.51898 1.45659 1.04546 1.11278 1.73724 1.21260 0.80429 0.93683 1.03090 1.22647 0.93966 0.93501 0.87895 0.90714 1.21608 0.87840 0.91667 1.00001 1.44329 1.23272 1.39247 1.26780 1.19527 0.89173 1.40212 0.90759 0.90905 1.25816 0.98619 1.02445 0.97629 1.70181 1.21997 1.50665 1.15319 0.85291 0.77901 0.78558 0.78375 1.20017 1.22151 1.20266 1.21333 0.95589 0.93712 0.87803 1.23155 0.87403 0.89463 1.02263 1.87810 1.53849 1.50547 1.38589 1.21189 0.99390 0.91472 0.95277 1.19938 0.85746 1.02327 1.02051 1.20873 0.84920 0.94057 1.03675 1.84516 1.15023 1.36718 1.74327 0.86429 0.86371 0.86408 0.84820 0.74567 0.91713 0.89016 0.96557 0.90892 0.93966 0.98501 0.91427 0.87303 0.92728 0.80580 0.80445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.26 4.11 8.23 88.40 0.73 4.84 16 3 N -0.52 -11.97 11.34 -296.35 -3.36 -15.33 16 4 C -0.01 -0.20 7.23 39.27 0.28 0.08 16 5 C -0.02 -0.38 9.64 22.75 0.22 -0.16 16 6 C -0.13 -2.98 5.87 -20.11 -0.12 -3.10 16 7 C 0.56 15.00 7.77 86.75 0.67 15.68 16 8 O -0.58 -20.13 16.33 -3.94 -0.06 -20.19 16 9 N -0.70 -16.22 5.45 -466.09 -2.54 -18.76 16 10 C 0.14 3.84 5.35 86.38 0.46 4.30 16 11 C 0.08 2.48 2.81 30.69 0.09 2.57 16 12 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 13 C 0.12 4.60 6.02 86.35 0.52 5.12 16 14 N -0.61 -29.86 3.05 -697.55 -2.13 -31.99 16 15 C -0.27 -14.22 9.65 84.03 0.81 -13.41 16 16 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 17 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 18 N -0.94 -54.25 11.14 21.65 0.24 -54.01 16 19 Si 0.97 43.50 29.59 68.60 2.03 45.53 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.14 6.60 5.45 86.35 0.47 7.07 16 24 C 0.05 1.90 6.98 72.08 0.50 2.40 16 25 O -0.39 -12.94 10.33 -148.98 -1.54 -14.48 16 26 C -0.05 -0.81 9.47 22.31 0.21 -0.59 16 27 C -0.08 -1.15 9.99 22.03 0.22 -0.93 16 28 C 0.02 0.31 7.43 22.98 0.17 0.48 16 29 O -0.21 -3.77 10.77 -9.29 -0.10 -3.87 16 30 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.13 3.66 7.64 -2.91 -0.02 3.64 16 34 H 0.42 7.27 6.48 -92.70 -0.60 6.67 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.07 3.51 6.14 -2.39 -0.01 3.50 16 42 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.18 1.45 6.37 -2.91 -0.02 1.43 16 45 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -76.55 376.92 -0.62 -77.17 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.43 Total: 13.38 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.41 Total: 22.57 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -7.79 Total: -120.09 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.70 Total: -38.55 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.55 -0.62 -77.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035409074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.645 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds