Wall clock time and date at job start Wed Apr 1 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30093 * 124.88065 * 2 1 4 4 C 1.35585 * 108.83891 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.61928 * 359.58004 * 4 3 2 6 6 C 1.38589 * 119.91949 * 180.30002 * 5 4 3 7 7 C 1.38211 * 120.21326 * 359.49851 * 6 5 4 8 8 C 1.38178 * 120.67776 * 0.22658 * 7 6 5 9 9 C 1.39360 * 120.24243 * 0.02562 * 8 7 6 10 10 C 1.47434 * 120.30106 * 180.02562 * 9 8 7 11 11 O 1.21605 * 120.00060 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99966 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99931 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46828 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.51295 * 304.99907 * 14 13 12 16 16 C 1.53298 * 109.51041 * 184.90058 * 14 13 12 17 17 N 1.47156 * 108.38489 * 187.77565 * 16 14 13 18 18 C 1.36935 * 120.97913 * 230.55508 * 17 16 14 19 19 H 1.07998 * 120.00064 * 26.58993 * 18 17 16 20 20 C 1.38807 * 119.99936 * 206.58417 * 18 17 16 21 21 N 1.31615 * 120.00350 * 17.02776 * 20 18 17 22 22 Si 1.86804 * 120.00068 * 197.02493 * 20 18 17 23 23 H 1.48505 * 109.46999 * 94.15536 * 22 20 18 24 24 H 1.48494 * 109.47146 * 214.15149 * 22 20 18 25 25 H 1.48495 * 109.47141 * 334.15693 * 22 20 18 26 26 C 1.47145 * 118.03608 * 50.53111 * 17 16 14 27 27 C 1.53300 * 108.38851 * 309.46658 * 26 17 16 28 28 O 1.42958 * 109.26282 * 52.27479 * 27 26 17 29 29 O 1.34143 * 124.88143 * 179.42410 * 2 1 3 30 30 H 1.08998 * 109.47110 * 180.60115 * 1 2 3 31 31 H 1.08997 * 109.47068 * 300.60127 * 1 2 3 32 32 H 1.09008 * 109.47104 * 60.60243 * 1 2 3 33 33 H 1.08000 * 119.89079 * 179.76800 * 6 5 4 34 34 H 1.08005 * 119.66034 * 180.25354 * 7 6 5 35 35 H 1.08009 * 119.88351 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00382 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.47256 * 299.99779 * 13 12 10 38 38 H 1.08994 * 109.47280 * 60.00173 * 13 12 10 39 39 H 1.09000 * 109.67945 * 307.49271 * 16 14 13 40 40 H 1.08998 * 109.68359 * 68.04675 * 16 14 13 41 41 H 0.97000 * 120.00420 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.68409 * 69.19164 * 26 17 16 43 43 H 1.08999 * 109.68208 * 189.70683 * 26 17 16 44 44 H 1.08990 * 109.51263 * 172.22520 * 27 26 17 45 45 H 1.08996 * 109.50940 * 292.33404 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0672 0.0000 4 6 3.5540 0.6925 -0.0006 5 6 3.5682 -0.7103 0.0089 6 6 4.7763 -1.3893 0.0169 7 6 5.9678 -0.6891 0.0051 8 6 5.9734 0.6926 -0.0100 9 6 4.7724 1.3994 -0.0131 10 6 4.7769 2.8736 -0.0298 11 8 3.7256 3.4849 -0.0329 12 7 5.9461 3.5438 -0.0428 13 6 5.9505 5.0087 -0.0600 14 6 7.3946 5.5142 -0.0728 15 1 7.9370 5.0882 0.7713 16 6 7.4027 7.0435 0.0327 17 7 8.7818 7.5154 -0.1698 18 6 9.3664 8.3838 0.7129 19 1 9.0407 8.4081 1.7423 20 6 10.3778 9.2326 0.2847 21 7 10.5512 9.4536 -1.0011 22 14 11.4928 10.0614 1.5335 23 1 12.7185 9.2444 1.7217 24 1 11.8685 11.4115 1.0424 25 1 10.7779 10.1870 2.8289 26 6 9.5141 7.0261 -1.3486 27 6 9.4032 5.4976 -1.3868 28 8 8.0270 5.1222 -1.2935 29 8 2.2742 -1.1004 0.0111 30 1 -0.3633 -1.0276 0.0108 31 1 -0.3633 0.5231 0.8845 32 1 -0.3634 0.5045 -0.8954 33 1 4.7866 -2.4692 0.0280 34 1 6.9042 -1.2274 0.0074 35 1 6.9121 1.2268 -0.0195 36 1 6.7847 3.0563 -0.0414 37 1 5.4340 5.3632 -0.9519 38 1 5.4418 5.3841 0.8279 39 1 6.7535 7.4677 -0.7332 40 1 7.0526 7.3453 1.0198 41 1 11.2577 10.0471 -1.3003 42 1 9.0774 7.4486 -2.2536 43 1 10.5621 7.3170 -1.2765 44 1 9.8194 5.1257 -2.3229 45 1 9.9543 5.0716 -0.5485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035624855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:04 Heat of formation + Delta-G solvation = -8.488217 kcal Electronic energy + Delta-G solvation = -29383.792824 eV Core-core repulsion = 25176.056352 eV Total energy + Delta-G solvation = -4207.736473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.59048 -39.90630 -38.56034 -37.76174 -35.22560 -34.81239 -34.28276 -32.09094 -31.86672 -31.23167 -30.34575 -28.48764 -27.51759 -25.65173 -23.95388 -23.29666 -23.02744 -22.14841 -21.69364 -20.58911 -19.64775 -18.39201 -17.98150 -17.18977 -16.91907 -16.79682 -16.07012 -15.73786 -15.58976 -14.99679 -14.81836 -14.41910 -14.29941 -14.12071 -14.04353 -13.78507 -13.65798 -13.25786 -13.20536 -13.06307 -12.84073 -12.67572 -12.46379 -12.27878 -12.16031 -11.56879 -11.55326 -11.14281 -10.87792 -10.77945 -10.73126 -10.41971 -10.26926 -10.01084 -9.85499 -9.65021 -9.23741 -9.08898 -8.96871 -8.73082 -8.56604 -6.77580 -5.86418 -3.30413 0.03375 0.73911 2.10576 2.11867 2.69116 3.11355 3.32855 3.40167 3.41771 3.45652 3.57376 4.14334 4.24639 4.38596 4.41696 4.53002 4.62086 4.69424 4.91440 4.96165 5.03096 5.12645 5.22705 5.30877 5.41476 5.47679 5.50306 5.56805 5.77239 5.78602 5.80362 5.86222 5.89396 6.03197 6.14311 6.15984 6.27337 6.35271 6.47051 6.53346 6.74729 7.07903 7.34864 7.49057 7.56314 7.69299 7.83342 8.28157 8.31412 9.09246 9.71814 10.28868 11.21748 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002018 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.831890 B =13873.573760 C =14396.796248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.245 3.755 3 N -0.453 5.453 4 C 0.075 3.925 5 C -0.004 4.004 6 C -0.068 4.068 7 C -0.102 4.102 8 C -0.082 4.082 9 C -0.075 4.075 10 C 0.550 3.450 11 O -0.512 6.512 12 N -0.716 5.716 13 C 0.132 3.868 14 C 0.065 3.935 15 H 0.059 0.941 16 C 0.122 3.878 17 N -0.594 5.594 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.139 3.861 27 C 0.040 3.960 28 O -0.389 6.389 29 O -0.215 6.215 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.400 0.600 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 -24.708 1.554 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 N -0.182 5.182 4 C -0.039 4.039 5 C -0.055 4.055 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.102 4.102 9 C -0.079 4.079 10 C 0.335 3.665 11 O -0.387 6.387 12 N -0.369 5.369 13 C 0.008 3.992 14 C 0.005 3.995 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.318 5.318 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.014 3.986 27 C -0.038 4.038 28 O -0.309 6.309 29 O -0.107 6.107 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.236 0.764 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.512 -23.563 1.342 27.196 hybrid contribution 1.554 -0.280 0.684 1.721 sum -11.958 -23.844 2.026 26.751 Atomic orbital electron populations 1.20432 0.80620 1.05073 1.05878 1.26817 0.96930 0.78102 0.94704 1.70793 1.00612 1.27910 1.18883 1.19529 0.91615 0.90520 1.02206 1.20235 0.84191 0.94193 1.06861 1.20041 0.87273 1.00537 1.00876 1.20956 0.97423 0.93720 0.99921 1.21368 0.96954 0.94546 0.97369 1.19306 0.90562 0.93644 1.04430 1.17928 0.84255 0.86441 0.77850 1.90856 1.30919 1.68997 1.47970 1.45865 1.08115 1.07888 1.75035 1.21436 0.96192 0.78457 1.03094 1.22809 0.91319 0.97706 0.87649 0.92325 1.21446 0.88795 0.90352 0.99982 1.44068 1.08291 1.51924 1.27481 1.19212 1.16207 1.12869 0.90190 0.91297 1.25063 1.01435 0.97238 0.95934 1.70037 1.33237 1.38463 1.12892 0.86219 0.80925 0.78576 0.80725 1.21406 1.21683 1.20310 1.21437 0.99666 0.88173 0.89373 1.23319 0.81336 0.99020 1.00140 1.87793 1.25299 1.79607 1.38189 1.84496 1.15057 1.36458 1.74673 0.88979 0.87756 0.87752 0.84260 0.83380 0.83875 0.76425 0.90499 0.89963 0.95151 0.91716 0.93488 0.95334 0.88851 0.90038 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.25 2.64 8.24 -13.01 -0.11 2.53 16 3 N -0.45 -6.68 10.62 -8.48 -0.09 -6.77 16 4 C 0.08 1.06 6.84 -84.44 -0.58 0.49 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.34 16 6 C -0.07 -0.55 10.05 -39.46 -0.40 -0.95 16 7 C -0.10 -0.72 10.00 -39.61 -0.40 -1.12 16 8 C -0.08 -0.75 9.53 -39.19 -0.37 -1.13 16 9 C -0.08 -1.00 5.90 -104.74 -0.62 -1.61 16 10 C 0.55 8.62 7.76 -12.52 -0.10 8.52 16 11 O -0.51 -9.99 16.07 5.27 0.08 -9.90 16 12 N -0.72 -9.95 5.46 -61.38 -0.33 -10.29 16 13 C 0.13 2.05 5.35 -4.04 -0.02 2.03 16 14 C 0.07 1.13 2.81 -26.58 -0.07 1.05 16 15 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.12 2.53 6.02 -3.53 -0.02 2.50 16 17 N -0.59 -14.74 3.05 -171.83 -0.52 -15.26 16 18 C -0.26 -6.89 9.64 -15.06 -0.15 -7.04 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 21 N -0.90 -25.84 11.18 55.49 0.62 -25.22 16 22 Si 0.91 21.32 29.59 -169.99 -5.03 16.29 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.14 3.28 5.44 -3.53 -0.02 3.26 16 27 C 0.04 0.74 6.98 37.31 0.26 1.00 16 28 O -0.39 -7.17 10.33 -35.23 -0.36 -7.53 16 29 O -0.21 -2.34 10.77 3.73 0.04 -2.30 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.14 0.98 6.39 -52.48 -0.34 0.65 16 36 H 0.40 4.60 6.50 -40.82 -0.27 4.34 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -36.07 376.58 -8.46 -44.53 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.96 Total: 1.56 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.58 Total: 9.21 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.33 Total: -57.54 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.24 Total: -19.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.07 -8.46 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035624855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.046 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds