Wall clock time and date at job start Wed Apr 1 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30093 * 124.88065 * 2 1 4 4 C 1.35585 * 108.83891 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.61928 * 359.58004 * 4 3 2 6 6 C 1.38589 * 119.91949 * 180.30002 * 5 4 3 7 7 C 1.38211 * 120.21326 * 359.49851 * 6 5 4 8 8 C 1.38178 * 120.67776 * 0.22658 * 7 6 5 9 9 C 1.39360 * 120.24243 * 0.02562 * 8 7 6 10 10 C 1.47434 * 120.30106 * 180.02562 * 9 8 7 11 11 O 1.21605 * 120.00060 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99966 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99931 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46828 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.51295 * 304.99907 * 14 13 12 16 16 C 1.53298 * 109.51041 * 184.90058 * 14 13 12 17 17 N 1.47156 * 108.38489 * 187.77565 * 16 14 13 18 18 C 1.36935 * 120.97913 * 230.55508 * 17 16 14 19 19 H 1.07998 * 120.00064 * 26.58993 * 18 17 16 20 20 C 1.38807 * 119.99936 * 206.58417 * 18 17 16 21 21 N 1.31615 * 120.00350 * 17.02776 * 20 18 17 22 22 Si 1.86804 * 120.00068 * 197.02493 * 20 18 17 23 23 H 1.48505 * 109.46999 * 94.15536 * 22 20 18 24 24 H 1.48494 * 109.47146 * 214.15149 * 22 20 18 25 25 H 1.48495 * 109.47141 * 334.15693 * 22 20 18 26 26 C 1.47145 * 118.03608 * 50.53111 * 17 16 14 27 27 C 1.53300 * 108.38851 * 309.46658 * 26 17 16 28 28 O 1.42958 * 109.26282 * 52.27479 * 27 26 17 29 29 O 1.34143 * 124.88143 * 179.42410 * 2 1 3 30 30 H 1.08998 * 109.47110 * 180.60115 * 1 2 3 31 31 H 1.08997 * 109.47068 * 300.60127 * 1 2 3 32 32 H 1.09008 * 109.47104 * 60.60243 * 1 2 3 33 33 H 1.08000 * 119.89079 * 179.76800 * 6 5 4 34 34 H 1.08005 * 119.66034 * 180.25354 * 7 6 5 35 35 H 1.08009 * 119.88351 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00382 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.47256 * 299.99779 * 13 12 10 38 38 H 1.08994 * 109.47280 * 60.00173 * 13 12 10 39 39 H 1.09000 * 109.67945 * 307.49271 * 16 14 13 40 40 H 1.08998 * 109.68359 * 68.04675 * 16 14 13 41 41 H 0.97000 * 120.00420 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.68409 * 69.19164 * 26 17 16 43 43 H 1.08999 * 109.68208 * 189.70683 * 26 17 16 44 44 H 1.08990 * 109.51263 * 172.22520 * 27 26 17 45 45 H 1.08996 * 109.50940 * 292.33404 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0672 0.0000 4 6 3.5540 0.6925 -0.0006 5 6 3.5682 -0.7103 0.0089 6 6 4.7763 -1.3893 0.0169 7 6 5.9678 -0.6891 0.0051 8 6 5.9734 0.6926 -0.0100 9 6 4.7724 1.3994 -0.0131 10 6 4.7769 2.8736 -0.0298 11 8 3.7256 3.4849 -0.0329 12 7 5.9461 3.5438 -0.0428 13 6 5.9505 5.0087 -0.0600 14 6 7.3946 5.5142 -0.0728 15 1 7.9370 5.0882 0.7713 16 6 7.4027 7.0435 0.0327 17 7 8.7818 7.5154 -0.1698 18 6 9.3664 8.3838 0.7129 19 1 9.0407 8.4081 1.7423 20 6 10.3778 9.2326 0.2847 21 7 10.5512 9.4536 -1.0011 22 14 11.4928 10.0614 1.5335 23 1 12.7185 9.2444 1.7217 24 1 11.8685 11.4115 1.0424 25 1 10.7779 10.1870 2.8289 26 6 9.5141 7.0261 -1.3486 27 6 9.4032 5.4976 -1.3868 28 8 8.0270 5.1222 -1.2935 29 8 2.2742 -1.1004 0.0111 30 1 -0.3633 -1.0276 0.0108 31 1 -0.3633 0.5231 0.8845 32 1 -0.3634 0.5045 -0.8954 33 1 4.7866 -2.4692 0.0280 34 1 6.9042 -1.2274 0.0074 35 1 6.9121 1.2268 -0.0195 36 1 6.7847 3.0563 -0.0414 37 1 5.4340 5.3632 -0.9519 38 1 5.4418 5.3841 0.8279 39 1 6.7535 7.4677 -0.7332 40 1 7.0526 7.3453 1.0198 41 1 11.2577 10.0471 -1.3003 42 1 9.0774 7.4486 -2.2536 43 1 10.5621 7.3170 -1.2765 44 1 9.8194 5.1257 -2.3229 45 1 9.9543 5.0716 -0.5485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035624855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:03 Heat of formation + Delta-G solvation = -36.634956 kcal Electronic energy + Delta-G solvation = -29385.013358 eV Core-core repulsion = 25176.056352 eV Total energy + Delta-G solvation = -4208.957007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.36348 -41.05927 -40.04099 -38.64347 -36.55038 -36.02232 -35.71208 -33.46300 -32.83140 -32.53287 -31.61860 -29.25247 -29.08063 -27.25304 -25.09558 -24.72804 -24.12750 -23.11950 -22.85457 -21.82532 -21.15658 -19.23865 -19.01011 -18.70028 -17.98992 -17.71733 -17.52509 -17.05295 -16.74990 -16.31496 -16.15924 -15.95459 -15.52570 -15.43111 -15.09482 -14.92585 -14.71356 -14.60002 -14.39931 -14.14243 -13.87421 -13.64883 -13.27469 -13.23938 -13.09655 -13.01778 -12.95054 -12.69680 -12.53424 -12.30621 -12.16700 -12.07541 -11.88229 -11.67133 -11.34311 -10.97225 -10.80058 -10.55120 -10.24860 -9.92651 -9.52275 -8.76417 -7.91961 -5.39840 -0.74203 0.01234 1.32225 1.42653 1.47053 1.47678 1.57547 1.73180 1.98932 2.47547 2.66832 2.76697 2.80475 3.22870 3.36371 3.47582 3.72651 3.77412 3.94971 4.02802 4.04185 4.07520 4.21481 4.28628 4.47662 4.51336 4.58326 4.59978 4.61193 4.66526 4.70469 4.72163 4.81057 4.89726 4.92706 5.04742 5.12074 5.14273 5.23442 5.23539 5.30965 5.54712 5.55256 5.60995 6.25036 6.32438 6.46596 6.57629 7.05471 7.15669 7.73134 8.27080 9.14143 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002018 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.831890 B =13873.573760 C =14396.796248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.250 3.750 3 N -0.513 5.513 4 C 0.040 3.960 5 C -0.024 4.024 6 C -0.054 4.054 7 C -0.091 4.091 8 C -0.066 4.066 9 C -0.116 4.116 10 C 0.549 3.451 11 O -0.564 6.564 12 N -0.704 5.704 13 C 0.142 3.858 14 C 0.082 3.918 15 H 0.075 0.925 16 C 0.116 3.884 17 N -0.612 5.612 18 C -0.266 4.266 19 H 0.073 0.927 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.973 3.027 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.142 3.858 27 C 0.054 3.946 28 O -0.389 6.389 29 O -0.215 6.215 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.176 0.824 34 H 0.196 0.804 35 H 0.168 0.832 36 H 0.414 0.586 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.015 0.985 40 H 0.072 0.928 41 H 0.252 0.748 42 H -0.003 1.003 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -28.115 2.594 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.040 3.960 3 N -0.243 5.243 4 C -0.074 4.074 5 C -0.074 4.074 6 C -0.073 4.073 7 C -0.109 4.109 8 C -0.086 4.086 9 C -0.120 4.120 10 C 0.337 3.663 11 O -0.443 6.443 12 N -0.357 5.357 13 C 0.018 3.982 14 C 0.023 3.977 15 H 0.093 0.907 16 C -0.011 4.011 17 N -0.337 5.337 18 C -0.396 4.396 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.016 3.984 27 C -0.023 4.023 28 O -0.309 6.309 29 O -0.107 6.107 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.193 0.807 34 H 0.213 0.787 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.033 0.967 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.464 -27.016 2.392 29.849 hybrid contribution 1.179 0.730 0.341 1.428 sum -11.286 -26.286 2.732 28.737 Atomic orbital electron populations 1.20736 0.77282 1.07251 1.06597 1.27761 0.98434 0.77425 0.92404 1.70748 1.01853 1.30107 1.21601 1.19918 0.91754 0.92216 1.03468 1.20707 0.85227 0.93478 1.08027 1.20647 0.86124 1.02375 0.98114 1.21514 0.98862 0.92786 0.97689 1.21747 0.96198 0.95765 0.94887 1.19275 0.92098 0.92038 1.08616 1.18402 0.83645 0.87755 0.76533 1.90815 1.32647 1.70281 1.50548 1.45670 1.08527 1.07000 1.74510 1.21189 0.94762 0.79697 1.02577 1.22610 0.92281 0.95005 0.87851 0.90725 1.21597 0.86732 0.92845 0.99879 1.44348 1.09875 1.52063 1.27378 1.19559 1.16258 1.12949 0.90787 0.90954 1.25857 1.02924 0.98261 0.97610 1.70196 1.33822 1.39434 1.14713 0.85174 0.79038 0.77027 0.78716 1.20787 1.22367 1.19239 1.21329 0.97688 0.91594 0.87774 1.23167 0.81769 0.95071 1.02304 1.87811 1.25219 1.79071 1.38764 1.84492 1.15124 1.36420 1.74713 0.86038 0.86858 0.86911 0.80700 0.78727 0.81486 0.74776 0.92230 0.89527 0.96669 0.90966 0.93922 0.98491 0.91389 0.87201 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.25 5.44 8.24 88.37 0.73 6.16 16 3 N -0.51 -15.90 10.62 -295.52 -3.14 -19.04 16 4 C 0.04 1.15 6.84 39.71 0.27 1.42 16 5 C -0.02 -0.53 7.42 22.85 0.17 -0.36 16 6 C -0.05 -0.68 10.05 22.35 0.22 -0.46 16 7 C -0.09 -0.88 10.00 22.25 0.22 -0.66 16 8 C -0.07 -1.03 9.53 22.53 0.21 -0.81 16 9 C -0.12 -3.04 5.90 -19.94 -0.12 -3.16 16 10 C 0.55 17.57 7.76 86.67 0.67 18.24 16 11 O -0.56 -23.23 16.07 -4.05 -0.07 -23.30 16 12 N -0.70 -19.01 5.46 -466.37 -2.54 -21.56 16 13 C 0.14 4.39 5.35 86.38 0.46 4.85 16 14 C 0.08 2.74 2.81 30.70 0.09 2.83 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 16 C 0.12 4.84 6.02 86.35 0.52 5.36 16 17 N -0.61 -30.65 3.05 -697.54 -2.13 -32.77 16 18 C -0.27 -14.40 9.64 84.03 0.81 -13.59 16 19 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 20 C -0.05 -2.81 4.94 84.86 0.42 -2.39 16 21 N -0.94 -54.90 11.18 21.65 0.24 -54.66 16 22 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.14 6.77 5.44 86.36 0.47 7.24 16 27 C 0.05 1.95 6.98 72.08 0.50 2.45 16 28 O -0.39 -13.68 10.33 -148.98 -1.54 -15.22 16 29 O -0.22 -4.54 10.77 -9.55 -0.10 -4.65 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.20 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.17 1.63 6.39 -2.91 -0.02 1.61 16 36 H 0.41 8.59 6.50 -92.71 -0.60 7.98 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 2.86 7.96 -2.39 -0.02 2.84 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.07 3.58 6.17 -2.39 -0.01 3.56 16 44 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -83.86 376.58 -0.41 -84.27 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.43 Total: 13.59 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 6.41 Total: 27.26 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -7.57 Total: -128.03 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.71 Total: -43.16 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -83.86 -0.41 -84.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035624855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.637 kcal (2) G-P(sol) polarization free energy of solvation -83.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds