Wall clock time and date at job start Wed Apr 1 2020 03:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30085 * 124.88478 * 2 1 4 4 C 1.35576 * 108.84510 * 179.97438 * 3 2 1 5 5 C 1.40289 * 106.62143 * 0.02562 * 4 3 2 6 6 C 1.38592 * 119.92474 * 179.97438 * 5 4 3 7 7 C 1.38216 * 120.21261 * 0.25640 * 6 5 4 8 8 C 1.38184 * 120.67302 * 359.41279 * 7 6 5 9 9 C 1.39366 * 120.24388 * 0.61844 * 8 7 6 10 10 C 1.47432 * 120.29950 * 179.70012 * 9 8 7 11 11 O 1.21596 * 119.99711 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00107 * 359.97433 * 10 9 8 13 13 C 1.46503 * 119.99764 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46779 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.51158 * 60.00652 * 14 13 12 16 16 C 1.53297 * 109.51232 * 180.10244 * 14 13 12 17 17 N 1.47143 * 108.38582 * 172.22748 * 16 14 13 18 18 C 1.36938 * 120.98480 * 129.48982 * 17 16 14 19 19 H 1.08000 * 120.00310 * 206.22972 * 18 17 16 20 20 C 1.38817 * 119.99679 * 26.22354 * 18 17 16 21 21 N 1.31613 * 119.99999 * 16.90992 * 20 18 17 22 22 Si 1.86800 * 119.99734 * 196.91187 * 20 18 17 23 23 H 1.48498 * 109.47445 * 90.00272 * 22 20 18 24 24 H 1.48501 * 109.46686 * 210.00187 * 22 20 18 25 25 H 1.48502 * 109.47259 * 329.99708 * 22 20 18 26 26 C 1.47163 * 118.03678 * 309.46804 * 17 16 14 27 27 C 1.53291 * 108.38388 * 50.53536 * 26 17 16 28 28 O 1.42962 * 109.26488 * 307.72075 * 27 26 17 29 29 O 1.34143 * 124.88008 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46677 * 90.00695 * 1 2 3 31 31 H 1.08996 * 109.47265 * 209.99971 * 1 2 3 32 32 H 1.08994 * 109.46926 * 330.00542 * 1 2 3 33 33 H 1.07994 * 119.89341 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.66282 * 179.74869 * 7 6 5 35 35 H 1.07999 * 119.88090 * 180.27577 * 8 7 6 36 36 H 0.96996 * 119.99821 * 0.02562 * 12 10 9 37 37 H 1.08992 * 109.47602 * 300.00399 * 13 12 10 38 38 H 1.09000 * 109.46901 * 60.00665 * 13 12 10 39 39 H 1.08998 * 109.68420 * 291.95235 * 16 14 13 40 40 H 1.09008 * 109.67509 * 52.46741 * 16 14 13 41 41 H 0.96999 * 120.00143 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.68006 * 170.25827 * 26 17 16 43 43 H 1.09000 * 109.67839 * 290.76942 * 26 17 16 44 44 H 1.08996 * 109.51575 * 67.61927 * 27 26 17 45 45 H 1.08999 * 109.51423 * 187.77437 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0671 0.0000 4 6 3.5540 0.6925 0.0006 5 6 3.5682 -0.7103 0.0003 6 6 4.7763 -1.3895 0.0003 7 6 5.9679 -0.6892 0.0058 8 6 5.9735 0.6927 -0.0008 9 6 4.7723 1.3995 -0.0001 10 6 4.7769 2.8738 -0.0004 11 8 3.7256 3.4849 -0.0002 12 7 5.9461 3.5441 -0.0008 13 6 5.9505 5.0091 -0.0017 14 6 7.3946 5.5147 -0.0027 15 1 7.9075 5.1497 -0.8926 16 6 7.4004 7.0477 -0.0010 17 7 8.7858 7.5063 0.1868 18 6 9.3405 8.4360 -0.6518 19 1 10.4104 8.4627 -0.7964 20 6 8.5274 9.3440 -1.3162 21 7 7.2922 9.5429 -0.9077 22 14 9.1866 10.2835 -2.7901 23 1 8.9160 9.5124 -4.0301 24 1 8.5168 11.6062 -2.8737 25 1 10.6508 10.4788 -2.6382 26 6 9.5577 6.9369 1.3029 27 6 9.4468 5.4094 1.2376 28 8 8.0679 5.0392 1.1654 29 8 2.2741 -1.1004 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 4.7867 -2.4694 0.0005 34 1 6.9042 -1.2274 0.0098 35 1 6.9120 1.2269 -0.0008 36 1 6.7846 3.0565 -0.0013 37 1 5.4377 5.3735 -0.8917 38 1 5.4379 5.3745 0.8882 39 1 7.0171 7.4173 -0.9521 40 1 6.7773 7.4162 0.8140 41 1 6.7242 10.1777 -1.3717 42 1 10.6029 7.2332 1.2152 43 1 9.1529 7.2949 2.2495 44 1 9.9679 5.0439 0.3528 45 1 9.8945 4.9733 2.1307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035624858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:08 Heat of formation + Delta-G solvation = -8.044710 kcal Electronic energy + Delta-G solvation = -29589.547043 eV Core-core repulsion = 25381.829802 eV Total energy + Delta-G solvation = -4207.717241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.54255 -39.81935 -38.53325 -37.70319 -35.16610 -34.72374 -34.29302 -32.01198 -31.76592 -31.26625 -30.39906 -28.43970 -27.37953 -25.66493 -23.89888 -23.34379 -23.01475 -22.09717 -21.57591 -20.48875 -19.63372 -18.33842 -17.92076 -17.14600 -16.93846 -16.76054 -16.00177 -15.60717 -15.53804 -15.09978 -14.67826 -14.37587 -14.22948 -14.06781 -14.01505 -13.80914 -13.62046 -13.28617 -13.14693 -12.92350 -12.88152 -12.61749 -12.40936 -12.22831 -12.05404 -11.53482 -11.51246 -11.10985 -10.85876 -10.75295 -10.70714 -10.42518 -10.26446 -10.04480 -9.74225 -9.64675 -9.18442 -9.09204 -8.86602 -8.66544 -8.56269 -6.77678 -5.85676 -3.29779 0.08614 0.78459 2.15372 2.16382 2.76289 3.21002 3.34282 3.40817 3.42502 3.50977 3.64387 4.18156 4.28923 4.42194 4.44059 4.59129 4.68081 4.74005 4.97080 4.97722 5.08000 5.18376 5.28714 5.34375 5.45537 5.52982 5.60869 5.64009 5.81840 5.84175 5.85292 5.91327 5.93501 6.03935 6.11672 6.20577 6.24160 6.37117 6.49064 6.67347 6.76894 7.05702 7.40257 7.47278 7.67241 7.69670 7.82503 8.31552 8.38829 9.09305 9.72253 10.29210 11.22378 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.002282 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.033419 B =12266.078966 C =13146.037073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.244 3.756 3 N -0.452 5.452 4 C 0.075 3.925 5 C -0.004 4.004 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.083 4.083 9 C -0.073 4.073 10 C 0.548 3.452 11 O -0.511 6.511 12 N -0.715 5.715 13 C 0.134 3.866 14 C 0.055 3.945 15 H 0.056 0.944 16 C 0.152 3.848 17 N -0.594 5.594 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.050 3.950 28 O -0.390 6.390 29 O -0.215 6.215 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.399 0.601 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -24.763 1.972 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 N -0.180 5.180 4 C -0.039 4.039 5 C -0.054 4.054 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.077 4.077 10 C 0.333 3.667 11 O -0.387 6.387 12 N -0.368 5.368 13 C 0.011 3.989 14 C -0.004 4.004 15 H 0.074 0.926 16 C 0.026 3.974 17 N -0.318 5.318 18 C -0.387 4.387 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.028 4.028 28 O -0.310 6.310 29 O -0.108 6.108 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.235 0.765 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.392 -23.614 2.047 24.828 hybrid contribution 1.166 -0.209 -0.906 1.491 sum -6.226 -23.823 1.141 24.649 Atomic orbital electron populations 1.20439 0.80635 1.05693 1.05297 1.26807 0.96923 0.78097 0.94815 1.70813 1.00634 1.27899 1.18702 1.19535 0.91638 0.90520 1.02245 1.20242 0.84185 0.94187 1.06831 1.20028 0.87279 1.00485 1.01070 1.20948 0.97381 0.93716 0.99965 1.21365 0.96971 0.94510 0.97500 1.19346 0.90539 0.93748 1.04098 1.17933 0.84354 0.86390 0.78024 1.90860 1.30916 1.68972 1.47903 1.45881 1.07984 1.08027 1.74900 1.21440 0.96219 0.78035 1.03255 1.23158 0.90644 0.98872 0.87759 0.92583 1.21308 0.86637 0.86551 1.02932 1.44052 1.10755 1.46908 1.30101 1.19193 0.92312 1.08110 1.19047 0.91314 1.25070 0.96826 0.97099 1.00616 1.70013 1.07828 1.36727 1.39921 0.86245 0.78296 0.79053 0.82897 1.21333 1.21632 1.20405 1.21602 0.96665 0.91704 0.91799 1.23003 0.82324 0.97193 1.00263 1.87780 1.23385 1.76199 1.43601 1.84486 1.15053 1.36455 1.74757 0.88212 0.88894 0.87364 0.84305 0.83434 0.83891 0.76528 0.89838 0.90571 0.88548 0.95005 0.93355 0.91982 0.95544 0.93868 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.24 2.78 8.24 -13.02 -0.11 2.67 16 3 N -0.45 -7.01 10.62 -8.48 -0.09 -7.10 16 4 C 0.07 1.11 6.84 -84.45 -0.58 0.53 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.34 16 6 C -0.07 -0.59 10.05 -39.46 -0.40 -0.99 16 7 C -0.10 -0.76 10.00 -39.61 -0.40 -1.16 16 8 C -0.08 -0.81 9.53 -39.18 -0.37 -1.18 16 9 C -0.07 -1.02 5.90 -104.74 -0.62 -1.64 16 10 C 0.55 9.21 7.76 -12.52 -0.10 9.11 16 11 O -0.51 -10.65 16.07 5.28 0.08 -10.56 16 12 N -0.72 -10.84 5.40 -61.38 -0.33 -11.17 16 13 C 0.13 2.35 5.37 -4.04 -0.02 2.33 16 14 C 0.06 1.04 2.86 -26.58 -0.08 0.96 16 15 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.15 3.59 4.73 -3.54 -0.02 3.58 16 17 N -0.59 -14.75 3.05 -171.83 -0.52 -15.27 16 18 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 21 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 22 Si 0.91 21.41 29.59 -169.99 -5.03 16.38 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.24 6.74 -3.53 -0.02 2.21 16 27 C 0.05 0.86 6.98 37.31 0.26 1.12 16 28 O -0.39 -7.14 10.14 -35.23 -0.36 -7.49 16 29 O -0.22 -2.46 10.77 3.71 0.04 -2.42 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 1.06 6.39 -52.49 -0.34 0.72 16 36 H 0.40 4.99 6.38 -40.82 -0.26 4.73 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.10 2.51 6.14 -51.93 -0.32 2.19 16 40 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -36.13 376.23 -8.45 -44.58 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.95 Total: 2.57 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -2.58 Total: 10.11 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.33 Total: -58.84 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.23 Total: -20.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.13 -8.45 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035624858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.536 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds