Wall clock time and date at job start Wed Apr 1 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.45530 * 2 1 4 4 C 1.34764 * 120.00283 * 60.00187 * 3 2 1 5 5 O 1.21621 * 120.00172 * 359.97438 * 4 3 2 6 6 C 1.47334 * 120.00307 * 179.97438 * 4 3 2 7 7 C 1.39504 * 120.30088 * 0.02562 * 6 4 3 8 8 C 1.38054 * 120.21319 * 179.97438 * 7 6 4 9 9 C 1.38365 * 120.67657 * 359.97438 * 8 7 6 10 10 C 1.38397 * 120.25369 * 0.02562 * 9 8 7 11 11 O 1.35314 * 133.76146 * 180.02562 * 10 9 8 12 12 C 1.34327 * 108.10869 * 179.97438 * 11 10 9 13 13 O 1.35099 * 124.96198 * 180.26669 * 12 11 10 14 14 N 1.30860 * 110.07896 * 0.02562 * 12 11 10 15 15 C 1.35544 * 108.77675 * 359.97438 * 14 12 11 16 16 C 1.53042 * 109.45905 * 119.96685 * 2 1 3 17 17 C 1.53160 * 109.32642 * 181.38731 * 16 2 1 18 18 N 1.46923 * 108.77060 * 305.35684 * 17 16 2 19 19 C 1.36934 * 120.63313 * 233.63109 * 18 17 16 20 20 H 1.08000 * 120.00033 * 151.81361 * 19 18 17 21 21 C 1.38809 * 120.00072 * 331.80735 * 19 18 17 22 22 N 1.31621 * 119.99985 * 343.08303 * 21 19 18 23 23 Si 1.86799 * 120.00027 * 163.07617 * 21 19 18 24 24 H 1.48500 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47052 * 120.00607 * 23 21 19 26 26 H 1.48497 * 109.47657 * 240.00500 * 23 21 19 27 27 C 1.46934 * 118.73785 * 53.61110 * 18 17 16 28 28 C 1.53032 * 109.46321 * 240.02252 * 2 1 3 29 29 H 1.08997 * 109.46909 * 60.00693 * 1 2 3 30 30 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47173 * 300.00418 * 1 2 3 32 32 H 0.96998 * 119.99568 * 239.99156 * 3 2 1 33 33 H 1.07997 * 119.89206 * 359.96786 * 7 6 4 34 34 H 1.07998 * 119.65590 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.87035 * 179.97438 * 9 8 7 36 36 H 0.96695 * 113.99496 * 269.69972 * 13 12 11 37 37 H 1.08999 * 109.49984 * 301.32526 * 16 2 1 38 38 H 1.09003 * 109.49567 * 61.42702 * 16 2 1 39 39 H 1.09002 * 109.59251 * 185.56915 * 17 16 2 40 40 H 1.09001 * 109.71035 * 65.21553 * 17 16 2 41 41 H 0.97004 * 119.99645 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.58789 * 186.60480 * 27 18 17 43 43 H 1.08999 * 109.70192 * 66.25042 * 27 18 17 44 44 H 1.09004 * 109.49986 * 298.58065 * 28 2 1 45 45 H 1.09008 * 109.49609 * 58.64147 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6923 2.2112 1.0107 5 8 0.9928 1.8134 1.9227 6 6 2.1835 3.6002 1.0110 7 6 2.9857 4.0633 -0.0321 8 6 3.4445 5.3654 -0.0303 9 6 3.1171 6.2278 1.0010 10 6 2.3227 5.7932 2.0477 11 8 1.8446 6.3836 3.1675 12 6 1.1140 5.4775 3.8378 13 8 0.4741 5.7092 5.0049 14 7 1.1084 4.3389 3.1928 15 6 1.8472 4.4730 2.0644 16 6 2.0399 -0.7208 1.2501 17 6 3.5711 -0.6888 1.2646 18 7 4.0677 -1.2492 0.0005 19 6 4.9754 -2.2745 0.0007 20 1 5.0028 -2.9716 -0.8237 21 6 5.8604 -2.4177 1.0605 22 7 6.0656 -1.4140 1.8868 23 14 6.7600 -4.0351 1.3140 24 1 6.3574 -4.9965 0.2563 25 1 8.2250 -3.8035 1.2403 26 1 6.4132 -4.5909 2.6466 27 6 3.5715 -0.6890 -1.2639 28 6 2.0399 -0.7209 -1.2498 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5757 1.6987 -0.7275 33 1 3.2488 3.4010 -0.8436 34 1 4.0654 5.7143 -0.8421 35 1 3.4835 7.2437 0.9895 36 1 1.0067 5.5206 5.7896 37 1 1.6574 -0.2207 2.1399 38 1 1.6977 -1.7556 1.2383 39 1 3.9412 -1.2846 2.0989 40 1 3.9163 0.3399 1.3689 41 1 6.6838 -1.5143 2.6276 42 1 3.9418 -1.2850 -2.0980 43 1 3.9146 0.3402 -1.3696 44 1 1.6977 -1.7558 -1.2381 45 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045505388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:04 Heat of formation + Delta-G solvation = -25.164131 kcal Electronic energy + Delta-G solvation = -31103.479822 eV Core-core repulsion = 26895.020228 eV Total energy + Delta-G solvation = -4208.459595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.40326 -41.50641 -39.57818 -38.86592 -38.15303 -36.16200 -35.71226 -33.82546 -32.90323 -31.60513 -31.17230 -30.45128 -29.06485 -25.95704 -25.40245 -24.35685 -23.96923 -23.89531 -22.64091 -21.61708 -20.54853 -20.14052 -19.25019 -19.00198 -18.49508 -18.27244 -17.31968 -16.84277 -16.36810 -16.13990 -15.98684 -15.63230 -15.45093 -15.36881 -15.15430 -14.97231 -14.82468 -14.58721 -14.03396 -13.83777 -13.49552 -13.24474 -13.17093 -13.11371 -12.90028 -12.84768 -12.81021 -12.56983 -12.53288 -12.47096 -12.18069 -11.94780 -11.73594 -11.67830 -11.28706 -11.28072 -10.52608 -10.46797 -10.05171 -9.88827 -9.52563 -8.64159 -7.85002 -5.30350 -0.79125 -0.02118 0.77303 1.18640 1.45095 1.48133 1.57667 1.83797 2.18307 2.36750 2.52149 2.72415 3.29965 3.33547 3.67939 3.70057 3.76708 3.89141 3.99987 4.06585 4.10412 4.16120 4.29145 4.51443 4.58853 4.67662 4.69894 4.76393 4.82519 4.89609 4.92848 4.98072 5.07075 5.10951 5.16533 5.18087 5.25334 5.37740 5.39757 5.51604 5.52939 5.65109 5.69541 5.79653 6.14610 6.39643 6.40632 6.69366 7.16467 7.36613 7.89452 8.41106 9.20788 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.003208 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.644457 B = 8725.296118 C = 9102.676880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.189 3.811 3 N -0.698 5.698 4 C 0.549 3.451 5 O -0.551 6.551 6 C -0.109 4.109 7 C -0.068 4.068 8 C -0.084 4.084 9 C -0.054 4.054 10 C -0.008 4.008 11 O -0.224 6.224 12 C 0.421 3.579 13 O -0.404 6.404 14 N -0.487 5.487 15 C 0.047 3.953 16 C -0.140 4.140 17 C 0.197 3.803 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.297 1.297 27 C 0.140 3.860 28 C -0.123 4.123 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.407 0.593 33 H 0.166 0.834 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.445 0.555 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.037 0.963 40 H -0.008 1.008 41 H 0.246 0.754 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 17.864 -6.089 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.103 3.897 3 N -0.351 5.351 4 C 0.336 3.664 5 O -0.430 6.430 6 C -0.113 4.113 7 C -0.088 4.088 8 C -0.101 4.101 9 C -0.072 4.072 10 C -0.058 4.058 11 O -0.119 6.119 12 C 0.172 3.828 13 O -0.217 6.217 14 N -0.230 5.230 15 C -0.067 4.067 16 C -0.180 4.180 17 C 0.070 3.930 18 N -0.330 5.330 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.225 1.225 27 C 0.015 3.985 28 C -0.162 4.162 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.216 0.784 35 H 0.197 0.803 36 H 0.310 0.690 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.547 17.227 -5.394 19.973 hybrid contribution 1.377 -0.374 1.258 1.902 sum -7.171 16.853 -4.136 18.776 Atomic orbital electron populations 1.22107 0.93842 1.02515 1.02389 1.20188 0.93699 0.80166 0.95630 1.45876 1.53039 1.11462 1.24710 1.18263 0.80374 0.85566 0.82181 1.90758 1.38701 1.77161 1.36345 1.19429 1.03298 0.93022 0.95598 1.21758 0.93117 0.97811 0.96110 1.21547 0.98806 0.91268 0.98483 1.20641 0.94621 1.03160 0.88786 1.20416 1.03183 0.91688 0.90469 1.84478 1.55207 1.41138 1.31040 1.22802 0.88613 0.81117 0.90314 1.84842 1.37271 1.88060 1.11503 1.71154 1.22295 1.21536 1.07993 1.19573 0.98612 0.94268 0.94214 1.22373 0.97940 0.99218 0.98450 1.20250 0.89333 0.94379 0.88994 1.44272 1.48162 1.39623 1.00951 1.19579 1.09130 1.03560 1.06466 0.91072 1.25775 0.98697 1.00118 1.00146 1.70215 1.38475 1.30868 1.18677 0.85284 0.77767 0.80463 0.77423 1.18671 1.21863 1.22477 1.21103 0.92505 0.96637 0.88278 1.22223 0.96967 1.00944 0.96098 0.90947 0.91235 0.93255 0.75526 0.81696 0.78450 0.80275 0.68978 0.93053 0.92677 0.94456 0.99007 0.94505 0.91889 0.95485 0.90805 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.40 71.98 0.60 -3.94 16 2 C 0.19 6.31 0.66 3.63 0.00 6.31 16 3 N -0.70 -21.84 4.05 -426.11 -1.73 -23.56 16 4 C 0.55 19.95 7.18 86.64 0.62 20.57 16 5 O -0.55 -24.50 12.28 -4.10 -0.05 -24.55 16 6 C -0.11 -3.33 5.90 -19.93 -0.12 -3.45 16 7 C -0.07 -1.35 9.53 22.53 0.21 -1.13 16 8 C -0.08 -1.09 10.01 22.26 0.22 -0.86 16 9 C -0.05 -0.83 10.04 22.34 0.22 -0.61 16 10 C -0.01 -0.19 7.41 22.82 0.17 -0.03 16 11 O -0.22 -5.65 10.79 9.27 0.10 -5.55 16 12 C 0.42 11.47 9.54 130.39 1.24 12.71 16 13 O -0.40 -7.74 13.62 -61.47 -0.84 -8.58 16 14 N -0.49 -17.29 10.65 -421.85 -4.49 -21.78 16 15 C 0.05 1.54 6.83 39.73 0.27 1.81 16 16 C -0.14 -6.04 4.66 30.66 0.14 -5.89 16 17 C 0.20 10.03 5.04 86.35 0.44 10.47 16 18 N -0.61 -29.70 2.99 -699.15 -2.09 -31.79 16 19 C -0.26 -13.94 9.58 84.03 0.81 -13.14 16 20 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 21 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 22 N -0.94 -56.72 11.20 21.65 0.24 -56.48 16 23 Si 0.96 45.36 29.59 68.60 2.03 47.39 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 C 0.14 5.12 6.24 86.36 0.54 5.66 16 28 C -0.12 -3.63 4.96 30.67 0.15 -3.47 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.77 6.16 -2.39 -0.01 1.76 16 32 H 0.41 10.24 5.30 -92.71 -0.49 9.75 16 33 H 0.17 2.38 6.40 -2.91 -0.02 2.36 16 34 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.44 3.10 9.06 -74.06 -0.67 2.43 16 37 H 0.05 2.43 6.20 -2.39 -0.01 2.41 16 38 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 2.22 6.06 -2.39 -0.01 2.21 16 40 H -0.01 -0.45 7.74 -2.39 -0.02 -0.47 16 41 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 43 H 0.03 0.93 6.94 -2.39 -0.02 0.91 16 44 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -85.40 362.20 -0.97 -86.37 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.10 Total: 16.05 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 5.95 Total: 22.48 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -8.07 Total: -133.61 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.79 Total: -38.68 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -85.40 -0.97 -86.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045505388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.207 kcal (2) G-P(sol) polarization free energy of solvation -85.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds