Wall clock time and date at job start Wed Apr 1 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47065 * 126.29859 * 2 1 4 4 C 1.54065 * 110.05060 * 209.02323 * 3 2 1 5 5 C 1.55556 * 104.31833 * 314.71134 * 4 3 2 6 6 H 1.09001 * 111.26393 * 280.11589 * 5 4 3 7 7 C 1.50707 * 111.14518 * 155.83663 * 5 4 3 8 8 O 1.21277 * 120.00015 * 337.27097 * 7 5 4 9 9 N 1.34783 * 119.99500 * 157.26586 * 7 5 4 10 10 C 1.46502 * 119.99613 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.45686 * 60.02926 * 10 9 7 12 12 C 1.53044 * 109.46143 * 300.07417 * 10 9 7 13 13 C 1.53191 * 109.31021 * 301.34112 * 12 10 9 14 14 N 1.46922 * 108.77732 * 305.36995 * 13 12 10 15 15 C 1.36942 * 120.62853 * 233.58829 * 14 13 12 16 16 H 1.07995 * 120.00173 * 27.69336 * 15 14 13 17 17 C 1.38812 * 119.99954 * 207.69438 * 15 14 13 18 18 N 1.31622 * 120.00199 * 17.35403 * 17 15 14 19 19 Si 1.86800 * 120.00314 * 197.35447 * 17 15 14 20 20 H 1.48502 * 109.46982 * 59.99705 * 19 17 15 21 21 H 1.48499 * 109.47482 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47035 * 300.00298 * 19 17 15 23 23 C 1.46925 * 118.74210 * 53.60607 * 14 13 12 24 24 C 1.53037 * 109.45992 * 180.02562 * 10 9 7 25 25 S 1.67002 * 126.30178 * 179.97438 * 2 1 3 26 26 O 1.42098 * 105.13325 * 291.43472 * 25 2 1 27 27 O 1.42101 * 105.13421 * 60.98735 * 25 2 1 28 28 H 1.08998 * 109.47343 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47223 * 120.02682 * 1 2 3 30 30 H 1.09006 * 109.46791 * 240.02846 * 1 2 3 31 31 H 1.08992 * 109.35866 * 329.17100 * 3 2 1 32 32 H 1.08998 * 109.35448 * 88.88702 * 3 2 1 33 33 H 1.09006 * 110.46310 * 73.46986 * 4 3 2 34 34 H 1.08999 * 110.47071 * 196.05706 * 4 3 2 35 35 H 0.96993 * 120.00481 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47275 * 60.00389 * 11 10 9 37 37 H 1.09000 * 109.46982 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.47575 * 299.99459 * 11 10 9 39 39 H 1.08994 * 109.50069 * 61.29263 * 12 10 9 40 40 H 1.09001 * 109.49537 * 181.39469 * 12 10 9 41 41 H 1.09000 * 109.59084 * 185.57851 * 13 12 10 42 42 H 1.09006 * 109.58747 * 65.15328 * 13 12 10 43 43 H 0.96999 * 120.00556 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58731 * 186.60894 * 23 14 13 45 45 H 1.09000 * 109.70242 * 66.25083 * 23 14 13 46 46 H 1.08997 * 109.49894 * 178.60580 * 24 10 9 47 47 H 1.08997 * 109.49687 * 298.67112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3356 1.1853 0.0000 4 6 3.6683 0.8618 -0.7022 5 6 4.0864 -0.5176 -0.1173 6 1 4.5442 -0.4078 0.8658 7 6 5.0025 -1.2532 -1.0611 8 8 4.9982 -0.9837 -2.2435 9 7 5.8266 -2.2106 -0.5910 10 6 6.7168 -2.9260 -1.5086 11 6 7.6582 -1.9286 -2.1867 12 6 5.8827 -3.6437 -2.5723 13 6 4.9173 -4.6164 -1.8879 14 7 5.6887 -5.5149 -1.0183 15 6 5.5673 -6.8739 -1.1360 16 1 5.2939 -7.3114 -2.0847 17 6 5.7956 -7.6890 -0.0359 18 7 5.7900 -7.1756 1.1761 19 14 6.1109 -9.5145 -0.2753 20 1 7.3196 -9.7018 -1.1176 21 1 6.3234 -10.1578 1.0462 22 1 4.9399 -10.1355 -0.9450 23 6 6.5925 -4.9278 -0.0197 24 6 7.5388 -3.9520 -0.7252 25 16 2.4537 -1.3459 0.0006 26 8 2.2694 -1.9411 1.2777 27 8 2.1372 -2.0393 -1.1987 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8897 30 1 -0.3633 -0.5134 0.8903 31 1 1.8379 1.9992 -0.5270 32 1 2.5334 1.4882 1.0282 33 1 3.5237 0.7914 -1.7803 34 1 4.4171 1.6177 -0.4657 35 1 5.8298 -2.4263 0.3546 36 1 8.2521 -1.4169 -1.4294 37 1 8.3209 -2.4608 -2.8692 38 1 7.0727 -1.1978 -2.7445 39 1 5.3151 -2.9105 -3.1453 40 1 6.5430 -4.1964 -3.2406 41 1 4.3912 -5.2010 -2.6427 42 1 4.1982 -4.0571 -1.2893 43 1 5.9491 -7.7452 1.9449 44 1 7.1719 -5.7179 0.4580 45 1 6.0118 -4.3944 0.7329 46 1 8.1834 -4.5018 -1.4109 47 1 8.1505 -3.4384 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045586749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:19 Heat of formation + Delta-G solvation = -63.606659 kcal Electronic energy + Delta-G solvation = -30947.038351 eV Core-core repulsion = 26872.355715 eV Total energy + Delta-G solvation = -4074.682636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.37225 -37.98873 -37.12002 -36.98701 -35.94428 -34.46711 -33.39586 -32.00329 -30.86115 -29.92596 -27.93493 -27.42447 -25.74287 -24.08550 -22.91616 -22.27524 -21.29130 -20.54931 -19.10096 -18.80172 -17.82664 -17.41142 -16.94710 -16.70377 -15.70939 -15.31811 -15.03891 -14.82496 -14.68223 -14.30159 -14.22858 -13.82908 -13.54875 -13.42926 -13.35331 -13.23919 -13.16089 -13.00118 -12.40571 -12.30959 -12.10513 -12.00165 -11.87449 -11.73221 -11.66033 -11.36472 -11.28541 -11.21987 -10.92026 -10.72732 -10.67579 -10.36550 -10.29749 -9.92673 -9.83554 -9.65666 -9.28801 -9.25424 -8.78944 -8.43045 -6.63408 -5.75583 -3.16717 -0.09819 2.29203 2.65014 3.03079 3.42164 3.47123 3.47263 3.48941 3.56977 4.15294 4.21804 4.52992 4.55365 4.62052 4.84828 4.89360 5.19306 5.26009 5.26315 5.35404 5.36447 5.43532 5.49134 5.49608 5.57384 5.60910 5.62481 5.93444 6.02319 6.16667 6.22874 6.25150 6.33087 6.37390 6.51374 6.64325 6.67491 6.85711 6.94580 7.05825 7.28958 7.57757 7.64397 7.84129 8.22727 8.48507 9.24895 9.88132 10.45079 11.33416 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004007 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.871663 B = 6986.867463 C = 8151.565046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -1.000 6.000 3 C 0.080 3.920 4 C -0.108 4.108 5 C -0.603 4.603 6 H 0.164 0.836 7 C 0.541 3.459 8 O -0.513 6.513 9 N -0.704 5.704 10 C 0.182 3.818 11 C -0.160 4.160 12 C -0.146 4.146 13 C 0.148 3.852 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.168 3.832 24 C -0.146 4.146 25 S 2.587 3.413 26 O -0.939 6.939 27 O -0.926 6.926 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.402 0.598 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.254 0.746 44 H 0.092 0.908 45 H 0.015 0.985 46 H 0.075 0.925 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 20.871 -0.628 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.844 5.844 3 C -0.046 4.046 4 C -0.147 4.147 5 C -0.714 4.714 6 H 0.182 0.818 7 C 0.323 3.677 8 O -0.388 6.388 9 N -0.356 5.356 10 C 0.097 3.903 11 C -0.218 4.218 12 C -0.186 4.186 13 C 0.022 3.978 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.042 3.958 24 C -0.185 4.185 25 S 2.679 3.321 26 O -0.928 6.928 27 O -0.915 6.915 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.238 0.762 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.033 0.967 46 H 0.094 0.906 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.635 19.965 -1.267 20.333 hybrid contribution 0.567 -0.366 0.648 0.936 sum -3.069 19.599 -0.619 19.847 Atomic orbital electron populations 1.21292 0.75770 1.03361 1.01790 1.57228 1.13894 1.21362 1.91896 1.22127 0.89882 0.90785 1.01771 1.22649 0.96241 0.92904 1.02931 1.31003 1.20527 1.10875 1.08997 0.81811 1.18775 0.80924 0.80261 0.87776 1.90648 1.67277 1.65348 1.15569 1.46219 1.39938 1.36924 1.12505 1.20416 0.89147 0.90872 0.89853 1.22221 0.99039 0.99856 1.00681 1.22439 0.99676 0.98948 0.97488 1.20862 0.92033 0.91553 0.93402 1.44058 1.45555 1.01917 1.39830 1.19179 1.43235 0.81414 0.94211 0.91625 1.25020 1.01715 0.97938 0.94988 1.70011 1.52927 1.34961 0.97028 0.86358 0.78409 0.85285 0.76663 1.21091 1.21685 1.20910 1.20774 0.90707 0.94564 0.89773 1.22534 0.98880 0.97290 0.99844 1.06308 0.76753 0.73471 0.75581 1.93645 1.83281 1.73781 1.42102 1.93661 1.80397 1.69931 1.47463 0.90189 0.91830 0.91972 0.88624 0.90636 0.87127 0.86871 0.76195 0.93221 0.91907 0.90871 0.90588 0.91396 0.92649 0.96918 0.93597 0.88951 0.96719 0.90648 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.05 11.40 59.85 0.68 1.73 16 2 N -1.00 -10.69 3.72 -120.71 -0.45 -11.14 16 3 C 0.08 0.56 6.81 -3.18 -0.02 0.54 16 4 C -0.11 -0.88 6.10 -24.82 -0.15 -1.03 16 5 C -0.60 -6.91 3.72 -26.52 -0.10 -7.01 16 6 H 0.16 1.32 8.14 -51.93 -0.42 0.89 16 7 C 0.54 8.21 6.28 -10.98 -0.07 8.14 16 8 O -0.51 -8.82 12.06 5.56 0.07 -8.75 16 9 N -0.70 -11.12 4.10 -47.56 -0.19 -11.32 16 10 C 0.18 3.08 0.66 -131.78 -0.09 2.99 16 11 C -0.16 -2.32 8.40 37.16 0.31 -2.01 16 12 C -0.15 -2.83 4.67 -26.61 -0.12 -2.95 16 13 C 0.15 3.42 6.26 -3.71 -0.02 3.39 16 14 N -0.59 -15.06 2.99 -172.35 -0.52 -15.57 16 15 C -0.25 -7.03 9.59 -15.06 -0.14 -7.17 16 16 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 19 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.17 3.87 5.03 -3.74 -0.02 3.85 16 24 C -0.15 -2.62 4.95 -26.64 -0.13 -2.75 16 25 S 2.59 38.63 5.83 -107.50 -0.63 38.01 16 26 O -0.94 -16.86 18.13 -57.43 -1.04 -17.90 16 27 O -0.93 -17.59 17.75 -57.43 -1.02 -18.61 16 28 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 1.07 7.27 -51.93 -0.38 0.69 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 5.92 7.27 -40.82 -0.30 5.62 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 39 H 0.08 1.49 6.20 -51.93 -0.32 1.17 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 1.30 7.93 -51.93 -0.41 0.88 16 42 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 45 H 0.01 0.35 6.94 -51.93 -0.36 -0.01 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -36.72 374.87 -9.93 -46.64 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.42 Total: 4.02 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.54 Total: -63.70 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.99 Total: -45.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 38.63 SS G_CDS: -0.63 Total: 38.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.72 -9.93 -46.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045586749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.966 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds