Wall clock time and date at job start Wed Apr 1 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47065 * 126.29859 * 2 1 4 4 C 1.54065 * 110.05060 * 209.02323 * 3 2 1 5 5 C 1.55556 * 104.31833 * 314.71134 * 4 3 2 6 6 H 1.09001 * 111.26393 * 280.11589 * 5 4 3 7 7 C 1.50707 * 111.14518 * 155.83663 * 5 4 3 8 8 O 1.21277 * 120.00015 * 337.27097 * 7 5 4 9 9 N 1.34783 * 119.99500 * 157.26586 * 7 5 4 10 10 C 1.46502 * 119.99613 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.45686 * 60.02926 * 10 9 7 12 12 C 1.53044 * 109.46143 * 300.07417 * 10 9 7 13 13 C 1.53191 * 109.31021 * 301.34112 * 12 10 9 14 14 N 1.46922 * 108.77732 * 305.36995 * 13 12 10 15 15 C 1.36942 * 120.62853 * 233.58829 * 14 13 12 16 16 H 1.07995 * 120.00173 * 27.69336 * 15 14 13 17 17 C 1.38812 * 119.99954 * 207.69438 * 15 14 13 18 18 N 1.31622 * 120.00199 * 17.35403 * 17 15 14 19 19 Si 1.86800 * 120.00314 * 197.35447 * 17 15 14 20 20 H 1.48502 * 109.46982 * 59.99705 * 19 17 15 21 21 H 1.48499 * 109.47482 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47035 * 300.00298 * 19 17 15 23 23 C 1.46925 * 118.74210 * 53.60607 * 14 13 12 24 24 C 1.53037 * 109.45992 * 180.02562 * 10 9 7 25 25 S 1.67002 * 126.30178 * 179.97438 * 2 1 3 26 26 O 1.42098 * 105.13325 * 291.43472 * 25 2 1 27 27 O 1.42101 * 105.13421 * 60.98735 * 25 2 1 28 28 H 1.08998 * 109.47343 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47223 * 120.02682 * 1 2 3 30 30 H 1.09006 * 109.46791 * 240.02846 * 1 2 3 31 31 H 1.08992 * 109.35866 * 329.17100 * 3 2 1 32 32 H 1.08998 * 109.35448 * 88.88702 * 3 2 1 33 33 H 1.09006 * 110.46310 * 73.46986 * 4 3 2 34 34 H 1.08999 * 110.47071 * 196.05706 * 4 3 2 35 35 H 0.96993 * 120.00481 * 0.02562 * 9 7 5 36 36 H 1.09001 * 109.47275 * 60.00389 * 11 10 9 37 37 H 1.09000 * 109.46982 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.47575 * 299.99459 * 11 10 9 39 39 H 1.08994 * 109.50069 * 61.29263 * 12 10 9 40 40 H 1.09001 * 109.49537 * 181.39469 * 12 10 9 41 41 H 1.09000 * 109.59084 * 185.57851 * 13 12 10 42 42 H 1.09006 * 109.58747 * 65.15328 * 13 12 10 43 43 H 0.96999 * 120.00556 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58731 * 186.60894 * 23 14 13 45 45 H 1.09000 * 109.70242 * 66.25083 * 23 14 13 46 46 H 1.08997 * 109.49894 * 178.60580 * 24 10 9 47 47 H 1.08997 * 109.49687 * 298.67112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3356 1.1853 0.0000 4 6 3.6683 0.8618 -0.7022 5 6 4.0864 -0.5176 -0.1173 6 1 4.5442 -0.4078 0.8658 7 6 5.0025 -1.2532 -1.0611 8 8 4.9982 -0.9837 -2.2435 9 7 5.8266 -2.2106 -0.5910 10 6 6.7168 -2.9260 -1.5086 11 6 7.6582 -1.9286 -2.1867 12 6 5.8827 -3.6437 -2.5723 13 6 4.9173 -4.6164 -1.8879 14 7 5.6887 -5.5149 -1.0183 15 6 5.5673 -6.8739 -1.1360 16 1 5.2939 -7.3114 -2.0847 17 6 5.7956 -7.6890 -0.0359 18 7 5.7900 -7.1756 1.1761 19 14 6.1109 -9.5145 -0.2753 20 1 7.3196 -9.7018 -1.1176 21 1 6.3234 -10.1578 1.0462 22 1 4.9399 -10.1355 -0.9450 23 6 6.5925 -4.9278 -0.0197 24 6 7.5388 -3.9520 -0.7252 25 16 2.4537 -1.3459 0.0006 26 8 2.2694 -1.9411 1.2777 27 8 2.1372 -2.0393 -1.1987 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8897 30 1 -0.3633 -0.5134 0.8903 31 1 1.8379 1.9992 -0.5270 32 1 2.5334 1.4882 1.0282 33 1 3.5237 0.7914 -1.7803 34 1 4.4171 1.6177 -0.4657 35 1 5.8298 -2.4263 0.3546 36 1 8.2521 -1.4169 -1.4294 37 1 8.3209 -2.4608 -2.8692 38 1 7.0727 -1.1978 -2.7445 39 1 5.3151 -2.9105 -3.1453 40 1 6.5430 -4.1964 -3.2406 41 1 4.3912 -5.2010 -2.6427 42 1 4.1982 -4.0571 -1.2893 43 1 5.9491 -7.7452 1.9449 44 1 7.1719 -5.7179 0.4580 45 1 6.0118 -4.3944 0.7329 46 1 8.1834 -4.5018 -1.4109 47 1 8.1505 -3.4384 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045586749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:18 Heat of formation + Delta-G solvation = -92.768628 kcal Electronic energy + Delta-G solvation = -30948.302909 eV Core-core repulsion = 26872.355715 eV Total energy + Delta-G solvation = -4075.947194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67230 -39.29264 -38.33435 -38.01722 -37.18295 -36.18876 -34.37477 -33.64050 -32.42597 -31.65050 -29.13745 -28.73509 -26.52647 -25.95077 -24.07619 -23.73708 -22.67175 -21.96560 -20.34533 -20.19263 -19.02183 -18.71720 -18.29779 -17.90935 -16.88192 -16.82059 -16.52554 -16.11466 -15.78838 -15.64056 -15.49849 -15.26390 -15.17215 -14.86177 -14.62526 -14.33561 -14.26571 -14.01919 -13.86239 -13.42074 -13.34528 -13.29396 -13.14229 -13.12718 -12.88965 -12.86084 -12.63795 -12.53617 -12.41401 -12.24308 -12.20268 -12.03305 -11.80949 -11.69630 -11.44243 -11.37045 -10.71729 -10.55042 -10.11632 -10.04218 -8.69888 -7.89695 -5.34522 -1.19283 1.36104 1.46159 1.47391 1.47743 1.55205 1.89292 2.41357 2.50128 2.79868 3.12254 3.24755 3.41778 3.53492 3.66141 3.83749 3.88294 3.98726 4.09397 4.11730 4.29197 4.43193 4.57378 4.60859 4.69472 4.71398 4.73906 4.79573 4.87242 4.87335 4.89733 4.95386 4.96106 5.02932 5.09937 5.16950 5.24324 5.35869 5.44641 5.56367 5.57690 5.61399 5.72983 6.36361 6.40422 7.01447 7.13570 7.82312 8.34855 9.16555 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004007 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.871663 B = 6986.867463 C = 8151.565046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.995 5.995 3 C 0.074 3.926 4 C -0.103 4.103 5 C -0.579 4.579 6 H 0.204 0.796 7 C 0.535 3.465 8 O -0.533 6.533 9 N -0.709 5.709 10 C 0.183 3.817 11 C -0.148 4.148 12 C -0.135 4.135 13 C 0.147 3.853 14 N -0.606 5.606 15 C -0.271 4.271 16 H 0.060 0.940 17 C -0.045 4.045 18 N -0.931 5.931 19 Si 0.969 3.031 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.171 3.829 24 C -0.130 4.130 25 S 2.563 3.437 26 O -0.987 6.987 27 O -0.988 6.988 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.038 0.962 42 H -0.006 1.006 43 H 0.252 0.748 44 H 0.062 0.938 45 H 0.003 0.997 46 H 0.074 0.926 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 23.890 -0.374 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.841 5.841 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.693 4.693 6 H 0.221 0.779 7 C 0.318 3.682 8 O -0.410 6.410 9 N -0.361 5.361 10 C 0.098 3.902 11 C -0.206 4.206 12 C -0.175 4.175 13 C 0.022 3.978 14 N -0.329 5.329 15 C -0.401 4.401 16 H 0.078 0.922 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.046 3.954 24 C -0.170 4.170 25 S 2.660 3.340 26 O -0.976 6.976 27 O -0.977 6.977 28 H 0.140 0.860 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.173 0.827 35 H 0.243 0.757 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.093 0.907 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.212 22.984 -1.017 23.112 hybrid contribution 0.036 -1.238 0.554 1.357 sum -2.176 21.746 -0.462 21.859 Atomic orbital electron populations 1.21560 0.74665 1.05889 1.01233 1.57013 1.14510 1.20966 1.91591 1.22518 0.88762 0.89758 1.04037 1.22875 0.97964 0.91462 1.01980 1.30874 1.16399 1.11479 1.10590 0.77885 1.19252 0.80853 0.80024 0.88082 1.90639 1.67850 1.65915 1.16629 1.46251 1.40273 1.36948 1.12609 1.20350 0.89239 0.91380 0.89252 1.22103 0.98467 0.98907 1.01131 1.22290 0.99105 0.98003 0.98062 1.20873 0.92599 0.91691 0.92683 1.44295 1.46524 1.01571 1.40559 1.19463 1.43418 0.83001 0.94197 0.92234 1.25758 1.01696 1.02013 0.94624 1.70159 1.53731 1.36249 0.97546 0.85332 0.78358 0.80149 0.76508 1.20054 1.21595 1.20760 1.20689 0.90674 0.94550 0.89516 1.22333 0.97934 0.96452 1.00247 1.06487 0.78732 0.74717 0.74020 1.93585 1.84716 1.76013 1.43284 1.93588 1.82233 1.72793 1.49046 0.85963 0.92856 0.92382 0.85286 0.87563 0.88760 0.82686 0.75689 0.90884 0.90923 0.91540 0.90906 0.91056 0.94329 0.98771 0.93879 0.91944 0.97861 0.90687 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 11.40 127.77 1.46 3.23 16 2 N -0.99 -19.85 3.72 -535.82 -1.99 -21.84 16 3 C 0.07 0.73 6.81 86.63 0.59 1.32 16 4 C -0.10 -1.31 6.10 31.84 0.19 -1.12 16 5 C -0.58 -12.07 3.72 30.73 0.11 -11.96 16 6 H 0.20 2.55 8.14 -2.39 -0.02 2.53 16 7 C 0.53 15.57 6.28 87.66 0.55 16.12 16 8 O -0.53 -17.84 12.06 -3.02 -0.04 -17.88 16 9 N -0.71 -21.62 4.10 -422.78 -1.73 -23.35 16 10 C 0.18 5.95 0.66 3.63 0.00 5.96 16 11 C -0.15 -3.85 8.40 71.98 0.60 -3.25 16 12 C -0.13 -5.28 4.67 30.67 0.14 -5.13 16 13 C 0.15 7.14 6.26 86.36 0.54 7.68 16 14 N -0.61 -31.96 2.99 -699.19 -2.09 -34.05 16 15 C -0.27 -15.66 9.59 84.03 0.81 -14.86 16 16 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 17 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 18 N -0.93 -55.61 11.19 21.65 0.24 -55.37 16 19 Si 0.97 46.03 29.59 68.60 2.03 48.06 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.17 8.02 5.03 86.35 0.43 8.46 16 24 C -0.13 -4.51 4.95 30.65 0.15 -4.36 16 25 S 2.56 78.30 5.83 -56.49 -0.33 77.97 16 26 O -0.99 -37.06 18.13 -127.76 -2.32 -39.38 16 27 O -0.99 -40.21 17.75 -127.76 -2.27 -42.48 16 28 H 0.12 0.93 8.11 -2.39 -0.02 0.91 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.59 7.27 -2.38 -0.02 1.57 16 34 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 11.60 7.27 -92.71 -0.67 10.93 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.86 6.17 -2.39 -0.01 1.85 16 39 H 0.07 2.90 6.20 -2.39 -0.01 2.88 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.04 1.92 7.93 -2.39 -0.02 1.90 16 42 H -0.01 -0.29 7.74 -2.38 -0.02 -0.31 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 45 H 0.00 0.16 6.94 -2.39 -0.02 0.15 16 46 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -85.83 374.87 -2.19 -88.02 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.30 Total: 20.35 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 6.00 Total: -0.07 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -5.58 Total: -134.61 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -4.62 Total: -99.73 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 78.30 SS G_CDS: -0.33 Total: 77.97 kcal Total: -85.83 -2.19 -88.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045586749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -85.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds