Wall clock time and date at job start Wed Apr 1 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46104 * 2 1 4 4 C 1.34776 * 119.99485 * 59.99906 * 3 2 1 5 5 O 1.21594 * 120.00327 * 0.02562 * 4 3 2 6 6 C 1.47524 * 119.99542 * 179.97438 * 4 3 2 7 7 C 1.40089 * 119.93500 * 359.97438 * 6 4 3 8 8 C 1.36291 * 120.38779 * 180.27594 * 7 6 4 9 9 C 1.39855 * 120.04314 * 359.49636 * 8 7 6 10 10 N 1.35814 * 133.52110 * 180.19985 * 9 8 7 11 11 C 1.30781 * 108.79631 * 180.27470 * 10 9 8 12 12 O 1.35105 * 124.91877 * 179.97438 * 11 10 9 13 13 O 1.34319 * 110.16110 * 0.02562 * 11 10 9 14 14 C 1.35320 * 108.12602 * 359.97438 * 13 11 10 15 15 C 1.38099 * 133.76362 * 180.02562 * 14 13 11 16 16 C 1.53045 * 109.45933 * 119.97474 * 2 1 3 17 17 C 1.53156 * 109.32623 * 181.38644 * 16 2 1 18 18 N 1.46930 * 108.77231 * 305.35327 * 17 16 2 19 19 C 1.36935 * 120.63230 * 233.63536 * 18 17 16 20 20 H 1.08008 * 119.99736 * 152.59830 * 19 18 17 21 21 C 1.38807 * 120.00248 * 332.59832 * 19 18 17 22 22 N 1.31617 * 120.00051 * 159.36393 * 21 19 18 23 23 Si 1.86799 * 119.99932 * 339.36177 * 21 19 18 24 24 H 1.48504 * 109.47170 * 92.90006 * 23 21 19 25 25 H 1.48503 * 109.47511 * 212.90263 * 23 21 19 26 26 H 1.48504 * 109.47060 * 332.90441 * 23 21 19 27 27 C 1.46931 * 118.73283 * 53.60697 * 18 17 16 28 28 C 1.53041 * 109.46203 * 240.02736 * 2 1 3 29 29 H 1.09003 * 109.46956 * 59.99712 * 1 2 3 30 30 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47120 * 299.99784 * 1 2 3 32 32 H 0.96998 * 120.00217 * 239.99402 * 3 2 1 33 33 H 1.08001 * 119.80587 * 0.02562 * 7 6 4 34 34 H 1.08005 * 119.97674 * 179.72615 * 8 7 6 35 35 H 0.96691 * 114.00238 * 0.02562 * 12 11 10 36 36 H 1.08005 * 120.18272 * 359.97438 * 15 14 13 37 37 H 1.09004 * 109.49403 * 301.32321 * 16 2 1 38 38 H 1.08999 * 109.49300 * 61.41781 * 16 2 1 39 39 H 1.09000 * 109.59075 * 185.56986 * 17 16 2 40 40 H 1.09004 * 109.71533 * 65.21186 * 17 16 2 41 41 H 0.97006 * 120.00090 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.58326 * 186.60715 * 27 18 17 43 43 H 1.09000 * 109.69992 * 66.25832 * 27 18 17 44 44 H 1.08998 * 109.49772 * 298.58203 * 28 2 1 45 45 H 1.09006 * 109.49301 * 58.64424 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2111 1.0109 5 8 0.9937 1.8131 1.9230 6 6 2.1842 3.6019 1.0112 7 6 2.9904 4.0585 -0.0396 8 6 3.4546 5.3399 -0.0459 9 6 3.1186 6.2114 0.9951 10 7 3.4154 7.5098 1.2603 11 6 2.8452 7.8508 2.3868 12 8 2.9285 9.0728 2.9569 13 8 2.1656 6.8098 2.8954 14 6 2.3105 5.7606 2.0532 15 6 1.8465 4.4599 2.0590 16 6 2.0398 -0.7210 1.2500 17 6 3.5710 -0.6890 1.2645 18 7 4.0677 -1.2494 0.0003 19 6 4.9753 -2.2747 0.0005 20 1 5.0112 -2.9642 -0.8300 21 6 5.8492 -2.4278 1.0680 22 7 6.4251 -3.5912 1.2853 23 14 6.2081 -0.9828 2.1960 24 1 5.2786 -1.0159 3.3538 25 1 7.6083 -1.0704 2.6827 26 1 6.0223 0.2868 1.4484 27 6 3.5713 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5758 1.6987 -0.7274 33 1 3.2488 3.3899 -0.8475 34 1 4.0792 5.6836 -0.8571 35 1 3.4602 9.7056 2.4551 36 1 1.2255 4.1085 2.8699 37 1 1.6574 -0.2209 2.1398 38 1 1.6975 -1.7557 1.2381 39 1 3.9411 -1.2849 2.0987 40 1 3.9163 0.3397 1.3689 41 1 7.0362 -3.6982 2.0311 42 1 3.9416 -1.2850 -2.0981 43 1 3.9145 0.3402 -1.3696 44 1 1.6976 -1.7557 -1.2382 45 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045647675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:01 Heat of formation + Delta-G solvation = 5.738610 kcal Electronic energy + Delta-G solvation = -30749.713931 eV Core-core repulsion = 26542.594380 eV Total energy + Delta-G solvation = -4207.119551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.71089 -40.56657 -38.96869 -38.24491 -37.22276 -34.94745 -34.66948 -32.31909 -31.32713 -31.12022 -30.47091 -29.44569 -27.73580 -24.69974 -24.07225 -23.87982 -22.84519 -22.45738 -21.63979 -20.82792 -19.46372 -19.10668 -18.61476 -18.12720 -17.65297 -16.99273 -16.31424 -15.53212 -15.31953 -15.13112 -14.97241 -14.51957 -14.34517 -14.19686 -14.08080 -13.88252 -13.69727 -13.56212 -13.28061 -13.06508 -12.82240 -12.37119 -12.10165 -12.03234 -11.92672 -11.75587 -11.48431 -11.36158 -11.22899 -10.96755 -10.82991 -10.57800 -10.28555 -10.04931 -9.76949 -9.53433 -9.36234 -9.28080 -8.93739 -8.64347 -8.54403 -6.97814 -5.95505 -3.31278 0.10040 0.80589 1.10983 1.81296 2.76975 2.97046 3.26316 3.35042 3.49282 3.51148 3.54901 3.96175 4.31518 4.50495 4.53455 4.63671 4.75140 4.88961 4.95998 5.08352 5.18061 5.21556 5.29088 5.44363 5.56396 5.60843 5.74788 5.80092 5.83384 5.87528 5.96208 5.98377 6.05678 6.09160 6.14082 6.29134 6.41073 6.48502 6.51371 6.53532 6.62705 6.69189 6.80078 6.96093 7.12900 7.62790 7.95799 8.27436 8.32003 8.93483 9.71977 10.09494 11.20409 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003217 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.564309 B = 8701.505044 C = 9749.092805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.705 5.705 4 C 0.563 3.437 5 O -0.530 6.530 6 C -0.113 4.113 7 C -0.076 4.076 8 C -0.075 4.075 9 C 0.073 3.927 10 N -0.526 5.526 11 C 0.456 3.544 12 O -0.413 6.413 13 O -0.197 6.197 14 C -0.009 4.009 15 C -0.017 4.017 16 C -0.144 4.144 17 C 0.131 3.869 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.085 0.915 21 C 0.025 3.975 22 N -0.908 5.908 23 Si 0.882 3.118 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.272 1.272 27 C 0.149 3.851 28 C -0.139 4.139 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.398 0.602 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.442 0.558 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 21.883 -3.682 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.357 5.357 4 C 0.350 3.650 5 O -0.408 6.408 6 C -0.117 4.117 7 C -0.096 4.096 8 C -0.095 4.095 9 C -0.040 4.040 10 N -0.277 5.277 11 C 0.207 3.793 12 O -0.215 6.215 13 O -0.090 6.090 14 C -0.058 4.058 15 C -0.036 4.036 16 C -0.184 4.184 17 C 0.006 3.994 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.197 1.197 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.303 0.697 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.100 0.900 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.434 21.711 -2.765 24.247 hybrid contribution 0.606 1.083 0.635 1.395 sum -9.828 22.795 -2.130 24.915 Atomic orbital electron populations 1.22219 0.94731 1.02305 1.02608 1.20327 0.93161 0.79517 0.97083 1.46060 1.52798 1.12269 1.24555 1.17791 0.80443 0.84350 0.82464 1.90735 1.37984 1.76592 1.35515 1.19774 1.01557 0.94557 0.95825 1.20970 0.95420 0.95420 0.97760 1.19906 1.00760 0.91605 0.97189 1.19635 0.97864 0.90063 0.96434 1.71163 1.28525 1.13820 1.14152 1.22316 0.87493 0.84411 0.85042 1.84653 1.72026 1.15372 1.49416 1.84390 1.61108 1.18044 1.45507 1.19779 1.05042 0.89493 0.91521 1.19835 0.98126 0.86723 0.98941 1.22416 0.98422 1.00321 0.97272 1.21250 0.91674 0.96586 0.89925 1.44353 1.48883 1.40277 0.99310 1.18901 1.09752 1.02701 1.07483 0.89693 1.25256 0.97405 0.96575 0.98167 1.69835 1.32616 1.21967 1.30667 0.86973 0.76177 0.84805 0.80787 1.21663 1.23241 1.19692 1.20883 0.90657 0.96281 0.89957 1.22349 0.99265 1.01085 0.95148 0.93131 0.91854 0.90651 0.76559 0.83931 0.83769 0.69721 0.83024 0.90524 0.90961 0.91193 0.95983 0.92775 0.91546 0.96499 0.90031 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.40 37.16 0.31 -1.83 16 2 C 0.18 2.74 0.66 -131.77 -0.09 2.65 16 3 N -0.71 -9.55 4.05 -48.60 -0.20 -9.74 16 4 C 0.56 8.16 7.18 -12.48 -0.09 8.07 16 5 O -0.53 -9.06 12.54 5.28 0.07 -8.99 16 6 C -0.11 -1.41 5.88 -104.92 -0.62 -2.02 16 7 C -0.08 -0.77 9.46 -39.59 -0.37 -1.14 16 8 C -0.08 -0.76 10.03 -39.68 -0.40 -1.15 16 9 C 0.07 0.85 7.23 -84.62 -0.61 0.24 16 10 N -0.53 -5.75 11.36 -12.72 -0.14 -5.90 16 11 C 0.46 4.52 9.54 52.31 0.50 5.02 16 12 O -0.41 -2.48 13.62 -40.32 -0.55 -3.03 16 13 O -0.20 -2.36 10.79 -20.53 -0.22 -2.58 16 14 C -0.01 -0.12 7.40 -38.76 -0.29 -0.40 16 15 C -0.02 -0.21 9.60 -39.13 -0.38 -0.58 16 16 C -0.14 -2.67 4.66 -26.63 -0.12 -2.79 16 17 C 0.13 2.88 3.95 -3.73 -0.01 2.86 16 18 N -0.60 -13.74 2.77 -172.34 -0.48 -14.22 16 19 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 20 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 21 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 22 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 23 Si 0.88 22.75 24.34 -169.99 -4.14 18.61 16 24 H -0.29 -7.38 6.62 56.52 0.37 -7.00 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 H -0.27 -6.84 6.64 56.52 0.38 -6.46 16 27 C 0.15 2.61 6.24 -3.71 -0.02 2.59 16 28 C -0.14 -1.99 4.96 -26.62 -0.13 -2.13 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.12 6.16 -51.93 -0.32 0.80 16 32 H 0.40 4.51 5.27 -40.82 -0.21 4.30 16 33 H 0.14 1.11 6.36 -52.49 -0.33 0.77 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.44 0.19 9.06 45.56 0.41 0.61 16 36 H 0.15 1.84 7.64 -52.48 -0.40 1.44 16 37 H 0.08 1.46 6.20 -51.93 -0.32 1.14 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.74 4.50 -51.93 -0.23 1.50 16 40 H 0.02 0.49 6.67 -51.93 -0.35 0.15 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.02 0.27 6.94 -51.93 -0.36 -0.09 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -35.02 356.12 -6.76 -41.78 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.68 Total: 2.98 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.57 Total: 2.76 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.04 Total: -56.89 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.70 Total: -14.61 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.02 -6.76 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045647675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.520 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds