Wall clock time and date at job start Wed Apr 1 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30014 * 124.83691 * 2 1 4 4 C 1.35846 * 108.85612 * 180.02562 * 3 2 1 5 5 C 1.39841 * 133.62887 * 180.02562 * 4 3 2 6 6 C 1.36282 * 120.03916 * 179.97438 * 5 4 3 7 7 C 1.40094 * 120.41807 * 0.02562 * 6 5 4 8 8 C 1.47632 * 119.93014 * 180.27204 * 7 6 5 9 9 O 1.21572 * 120.00031 * 140.29914 * 8 7 6 10 10 N 1.34778 * 119.99640 * 320.30498 * 8 7 6 11 11 C 1.46498 * 120.00310 * 4.90577 * 10 8 7 12 12 C 1.46497 * 119.99802 * 184.90723 * 10 8 7 13 13 H 1.09004 * 110.88911 * 0.70084 * 12 10 8 14 14 C 1.54909 * 111.00761 * 124.57848 * 12 10 8 15 15 N 1.47422 * 104.83862 * 155.08304 * 14 12 10 16 16 C 1.36928 * 125.65210 * 155.83260 * 15 14 12 17 17 H 1.07998 * 120.00253 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99751 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46837 * 60.00300 * 20 18 16 22 22 H 1.48505 * 109.46810 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47079 * 300.00249 * 20 18 16 24 24 C 1.47025 * 108.69980 * 335.87677 * 15 14 12 25 25 C 1.54372 * 107.29004 * 1.09023 * 24 15 14 26 26 H 1.09000 * 110.70134 * 263.79858 * 25 24 15 27 27 O 1.42900 * 110.75906 * 140.50815 * 25 24 15 28 28 C 1.39431 * 120.14522 * 359.97438 * 7 6 5 29 29 C 1.38284 * 119.62000 * 359.97438 * 28 7 6 30 30 O 1.34146 * 124.84172 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47647 * 89.97491 * 1 2 3 32 32 H 1.09005 * 109.47006 * 209.97347 * 1 2 3 33 33 H 1.09002 * 109.47318 * 329.97361 * 1 2 3 34 34 H 1.08000 * 119.97833 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.79102 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47234 * 85.54800 * 11 10 8 37 37 H 1.09006 * 109.47179 * 205.54599 * 11 10 8 38 38 H 1.08994 * 109.47225 * 325.54560 * 11 10 8 39 39 H 1.09000 * 110.36975 * 273.92873 * 14 12 10 40 40 H 1.09007 * 110.36359 * 36.13711 * 14 12 10 41 41 H 0.97001 * 119.99920 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88245 * 120.47058 * 24 15 14 43 43 H 1.08993 * 109.88160 * 241.63844 * 24 15 14 44 44 H 0.96698 * 113.99737 * 66.48363 * 27 25 24 45 45 H 1.08007 * 120.19118 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0671 0.0000 4 6 3.5556 0.6931 -0.0006 5 6 4.7619 1.4006 -0.0004 6 6 5.9472 0.7280 -0.0006 7 6 5.9679 -0.6728 -0.0016 8 6 7.2581 -1.3904 0.0043 9 8 7.3923 -2.3942 0.6767 10 7 8.2872 -0.9324 -0.7358 11 6 8.1615 0.3344 -1.4608 12 6 9.5315 -1.7015 -0.8153 13 1 9.4588 -2.6197 -0.2325 14 6 9.9027 -2.0066 -2.2879 15 7 11.3643 -2.1990 -2.2768 16 6 12.0814 -2.9199 -3.1939 17 1 11.5745 -3.4068 -4.0138 18 6 13.4600 -3.0249 -3.0698 19 7 14.0778 -2.4318 -2.0703 20 14 14.4383 -4.0078 -4.3213 21 1 14.2433 -3.4226 -5.6721 22 1 15.8797 -3.9656 -3.9664 23 1 13.9696 -5.4168 -4.3198 24 6 11.9243 -1.4894 -1.1173 25 6 10.7435 -0.8473 -0.3581 26 1 10.6152 0.1937 -0.6547 27 8 10.9322 -0.9526 1.0544 28 6 4.7727 -1.3907 -0.0018 29 6 3.5678 -0.7122 -0.0005 30 8 2.2733 -1.1010 -0.0005 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 4.7541 2.4805 -0.0001 35 1 6.8765 1.2784 0.0000 36 1 8.4188 1.1599 -0.7972 37 1 8.8369 0.3319 -2.3165 38 1 7.1353 0.4538 -1.8083 39 1 9.4031 -2.9149 -2.6248 40 1 9.6339 -1.1667 -2.9287 41 1 15.0411 -2.5055 -1.9833 42 1 12.4432 -2.1937 -0.4669 43 1 12.6138 -0.7154 -1.4540 44 1 11.6777 -0.4369 1.3911 45 1 4.7878 -2.4707 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047414781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:37 Heat of formation + Delta-G solvation = 8.023056 kcal Electronic energy + Delta-G solvation = -29957.761287 eV Core-core repulsion = 25750.740797 eV Total energy + Delta-G solvation = -4207.020490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.61402 -40.39682 -38.36844 -37.42657 -35.32278 -35.18397 -34.84140 -32.32913 -31.71742 -31.13735 -29.26333 -28.15795 -27.35401 -26.78944 -24.59406 -23.62499 -23.26418 -21.99568 -20.80417 -20.44162 -19.26331 -18.64823 -17.67397 -17.22697 -17.13364 -16.90532 -16.34159 -16.02460 -15.15887 -15.12879 -14.65799 -14.49981 -14.28530 -14.06934 -14.02783 -13.74106 -13.52890 -13.22294 -13.10826 -12.82999 -12.75515 -12.66980 -12.39500 -12.12886 -12.01936 -11.74084 -11.51766 -11.40452 -11.25045 -10.88840 -10.86020 -10.81351 -10.20990 -9.96881 -9.90095 -9.85645 -9.31090 -9.18068 -8.78564 -8.73079 -8.42859 -6.95493 -5.79300 -3.14872 0.12763 0.86103 1.88005 2.03643 2.74184 2.98949 3.37352 3.37749 3.40100 3.41901 3.42968 4.12489 4.29667 4.42740 4.57699 4.59473 4.67588 4.71807 4.82931 4.95220 4.98858 5.08779 5.16274 5.17504 5.37330 5.43326 5.51632 5.56866 5.59383 5.62251 5.71033 5.79388 5.80732 5.84039 5.92138 6.02531 6.09939 6.19678 6.42351 6.52738 6.81317 7.22067 7.31736 7.42311 7.46597 7.70390 8.12716 8.17808 8.18422 9.10945 9.71049 10.33738 11.31903 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002220 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.654949 B =12611.988638 C =13017.038252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.251 3.749 3 N -0.483 5.483 4 C 0.040 3.960 5 C -0.068 4.068 6 C -0.094 4.094 7 C -0.096 4.096 8 C 0.561 3.439 9 O -0.525 6.525 10 N -0.591 5.591 11 C 0.063 3.937 12 C 0.133 3.867 13 H 0.117 0.883 14 C 0.131 3.869 15 N -0.598 5.598 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.153 3.847 25 C 0.066 3.934 26 H 0.056 0.944 27 O -0.560 6.560 28 C -0.034 4.034 29 C 0.000 4.000 30 O -0.210 6.210 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.028 0.972 41 H 0.254 0.746 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.374 0.626 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.277 10.172 3.836 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.040 3.960 3 N -0.214 5.214 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.113 4.113 7 C -0.100 4.100 8 C 0.349 3.651 9 O -0.401 6.401 10 N -0.323 5.323 11 C -0.079 4.079 12 C 0.029 3.971 13 H 0.135 0.865 14 C 0.004 3.996 15 N -0.326 5.326 16 C -0.360 4.360 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.746 3.254 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.027 3.973 25 C 0.005 3.995 26 H 0.074 0.926 27 O -0.364 6.364 28 C -0.054 4.054 29 C -0.050 4.050 30 O -0.101 6.101 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.220 0.780 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.690 9.781 4.100 25.956 hybrid contribution 1.340 -0.686 -0.639 1.635 sum -22.350 9.094 3.461 24.377 Atomic orbital electron populations 1.20453 0.80694 1.05743 1.05343 1.26575 0.96744 0.78288 0.94344 1.70621 1.00931 1.28905 1.20924 1.20022 0.92261 0.91204 1.03721 1.19961 0.88183 1.00518 1.00060 1.21300 0.98966 0.92879 0.98182 1.19701 0.92818 0.93804 1.03676 1.17981 0.83098 0.84236 0.79823 1.90824 1.82862 1.25557 1.40862 1.47604 1.14163 1.22886 1.47616 1.22220 1.03216 0.85088 0.97422 1.22469 0.80448 0.95460 0.98679 0.86533 1.21792 0.87209 0.98835 0.91788 1.44220 0.99629 1.59867 1.28887 1.19014 0.89045 1.24500 1.03436 0.90173 1.24833 0.96450 1.00484 0.98490 1.69922 1.08521 1.47250 1.31204 0.86141 0.79067 0.79800 0.80392 1.21080 1.21537 1.21028 1.21855 0.90975 0.95897 0.88547 1.23550 0.96864 0.97625 0.81436 0.92599 1.86510 1.54230 1.73965 1.21719 1.19793 0.86163 1.00829 0.98600 1.20020 0.83693 0.94374 1.06912 1.84494 1.15235 1.36114 1.74271 0.88147 0.88713 0.87536 0.84002 0.83095 0.92189 0.89651 0.90560 0.93266 0.95503 0.93533 0.92115 0.93356 0.77963 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.25 2.35 8.23 -13.05 -0.11 2.24 16 3 N -0.48 -5.56 11.33 -8.63 -0.10 -5.65 16 4 C 0.04 0.48 7.24 -84.62 -0.61 -0.13 16 5 C -0.07 -0.68 10.03 -39.69 -0.40 -1.08 16 6 C -0.09 -0.96 7.49 -39.59 -0.30 -1.25 16 7 C -0.10 -1.24 5.23 -104.92 -0.55 -1.79 16 8 C 0.56 9.04 7.33 -12.43 -0.09 8.95 16 9 O -0.52 -10.52 16.29 5.30 0.09 -10.43 16 10 N -0.59 -9.03 2.91 -172.67 -0.50 -9.53 16 11 C 0.06 0.70 7.64 59.85 0.46 1.15 16 12 C 0.13 2.51 3.17 -65.78 -0.21 2.30 16 13 H 0.12 2.57 7.02 -51.93 -0.36 2.20 16 14 C 0.13 2.65 6.78 -2.53 -0.02 2.64 16 15 N -0.60 -14.92 3.39 -170.04 -0.58 -15.50 16 16 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.46 10.31 55.49 0.57 -25.88 16 20 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 3.59 5.15 -3.04 -0.02 3.58 16 25 C 0.07 1.23 3.91 -24.87 -0.10 1.14 16 26 H 0.06 0.93 7.21 -51.93 -0.37 0.55 16 27 O -0.56 -10.27 13.39 -35.23 -0.47 -10.74 16 28 C -0.03 -0.43 9.64 -39.12 -0.38 -0.81 16 29 C 0.00 0.00 7.42 -38.70 -0.29 -0.29 16 30 O -0.21 -2.37 10.77 3.72 0.04 -2.33 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.15 1.25 5.30 -52.48 -0.28 0.97 16 36 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 37 H 0.08 0.98 6.15 -51.93 -0.32 0.66 16 38 H 0.08 0.70 5.83 -51.93 -0.30 0.40 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.51 6.13 -51.92 -0.32 0.19 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 43 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 44 H 0.37 5.23 9.12 45.56 0.42 5.65 16 45 H 0.15 1.79 8.05 -52.48 -0.42 1.37 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -35.74 368.06 -7.65 -43.39 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.75 Total: 4.37 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -2.47 Total: 10.02 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.61 Total: -56.57 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.35 Total: -23.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.74 -7.65 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047414781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.409 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds