Wall clock time and date at job start Wed Apr 1 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30014 * 124.83691 * 2 1 4 4 C 1.35846 * 108.85612 * 180.02562 * 3 2 1 5 5 C 1.39841 * 133.62887 * 180.02562 * 4 3 2 6 6 C 1.36282 * 120.03916 * 179.97438 * 5 4 3 7 7 C 1.40094 * 120.41807 * 0.02562 * 6 5 4 8 8 C 1.47632 * 119.93014 * 180.27204 * 7 6 5 9 9 O 1.21572 * 120.00031 * 140.29914 * 8 7 6 10 10 N 1.34778 * 119.99640 * 320.30498 * 8 7 6 11 11 C 1.46498 * 120.00310 * 4.90577 * 10 8 7 12 12 C 1.46497 * 119.99802 * 184.90723 * 10 8 7 13 13 H 1.09004 * 110.88911 * 0.70084 * 12 10 8 14 14 C 1.54909 * 111.00761 * 124.57848 * 12 10 8 15 15 N 1.47422 * 104.83862 * 155.08304 * 14 12 10 16 16 C 1.36928 * 125.65210 * 155.83260 * 15 14 12 17 17 H 1.07998 * 120.00253 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99751 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46837 * 60.00300 * 20 18 16 22 22 H 1.48505 * 109.46810 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47079 * 300.00249 * 20 18 16 24 24 C 1.47025 * 108.69980 * 335.87677 * 15 14 12 25 25 C 1.54372 * 107.29004 * 1.09023 * 24 15 14 26 26 H 1.09000 * 110.70134 * 263.79858 * 25 24 15 27 27 O 1.42900 * 110.75906 * 140.50815 * 25 24 15 28 28 C 1.39431 * 120.14522 * 359.97438 * 7 6 5 29 29 C 1.38284 * 119.62000 * 359.97438 * 28 7 6 30 30 O 1.34146 * 124.84172 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47647 * 89.97491 * 1 2 3 32 32 H 1.09005 * 109.47006 * 209.97347 * 1 2 3 33 33 H 1.09002 * 109.47318 * 329.97361 * 1 2 3 34 34 H 1.08000 * 119.97833 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.79102 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47234 * 85.54800 * 11 10 8 37 37 H 1.09006 * 109.47179 * 205.54599 * 11 10 8 38 38 H 1.08994 * 109.47225 * 325.54560 * 11 10 8 39 39 H 1.09000 * 110.36975 * 273.92873 * 14 12 10 40 40 H 1.09007 * 110.36359 * 36.13711 * 14 12 10 41 41 H 0.97001 * 119.99920 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88245 * 120.47058 * 24 15 14 43 43 H 1.08993 * 109.88160 * 241.63844 * 24 15 14 44 44 H 0.96698 * 113.99737 * 66.48363 * 27 25 24 45 45 H 1.08007 * 120.19118 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0671 0.0000 4 6 3.5556 0.6931 -0.0006 5 6 4.7619 1.4006 -0.0004 6 6 5.9472 0.7280 -0.0006 7 6 5.9679 -0.6728 -0.0016 8 6 7.2581 -1.3904 0.0043 9 8 7.3923 -2.3942 0.6767 10 7 8.2872 -0.9324 -0.7358 11 6 8.1615 0.3344 -1.4608 12 6 9.5315 -1.7015 -0.8153 13 1 9.4588 -2.6197 -0.2325 14 6 9.9027 -2.0066 -2.2879 15 7 11.3643 -2.1990 -2.2768 16 6 12.0814 -2.9199 -3.1939 17 1 11.5745 -3.4068 -4.0138 18 6 13.4600 -3.0249 -3.0698 19 7 14.0778 -2.4318 -2.0703 20 14 14.4383 -4.0078 -4.3213 21 1 14.2433 -3.4226 -5.6721 22 1 15.8797 -3.9656 -3.9664 23 1 13.9696 -5.4168 -4.3198 24 6 11.9243 -1.4894 -1.1173 25 6 10.7435 -0.8473 -0.3581 26 1 10.6152 0.1937 -0.6547 27 8 10.9322 -0.9526 1.0544 28 6 4.7727 -1.3907 -0.0018 29 6 3.5678 -0.7122 -0.0005 30 8 2.2733 -1.1010 -0.0005 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 4.7541 2.4805 -0.0001 35 1 6.8765 1.2784 0.0000 36 1 8.4188 1.1599 -0.7972 37 1 8.8369 0.3319 -2.3165 38 1 7.1353 0.4538 -1.8083 39 1 9.4031 -2.9149 -2.6248 40 1 9.6339 -1.1667 -2.9287 41 1 15.0411 -2.5055 -1.9833 42 1 12.4432 -2.1937 -0.4669 43 1 12.6138 -0.7154 -1.4540 44 1 11.6777 -0.4369 1.3911 45 1 4.7878 -2.4707 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047414781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:36 Heat of formation + Delta-G solvation = -20.924660 kcal Electronic energy + Delta-G solvation = -29959.016554 eV Core-core repulsion = 25750.740797 eV Total energy + Delta-G solvation = -4208.275757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.41761 -41.62578 -39.74940 -38.58467 -36.74689 -36.44871 -35.98359 -33.92476 -32.69216 -31.99836 -30.63302 -29.48764 -28.68398 -28.01428 -26.36060 -24.56236 -24.24368 -22.81422 -22.31764 -21.98286 -20.55374 -19.64739 -19.02836 -18.61669 -18.21309 -18.02037 -17.60344 -17.31980 -16.73916 -16.28452 -16.01980 -15.79400 -15.39352 -15.20508 -15.02651 -14.63734 -14.54940 -14.38137 -14.16192 -14.08905 -13.95787 -13.66850 -13.62358 -13.32609 -13.16759 -13.03244 -12.99876 -12.70971 -12.67639 -12.55264 -12.28541 -12.11440 -11.87549 -11.70967 -11.54725 -11.21277 -10.88988 -10.76229 -10.02281 -9.82213 -9.56674 -8.95713 -7.88084 -5.25878 -0.74011 0.02192 1.02248 1.23122 1.46328 1.49794 1.55675 1.65915 1.82479 2.47310 2.47848 2.73551 3.11840 3.28821 3.31607 3.35303 3.57140 3.81345 3.85200 3.87913 3.89309 4.05539 4.11494 4.18850 4.24577 4.42128 4.50651 4.55421 4.57973 4.62307 4.67618 4.74131 4.78548 4.87084 4.91742 5.01013 5.04203 5.07525 5.18649 5.36809 5.39295 5.43955 5.47911 5.66596 6.12789 6.23978 6.43759 6.87037 6.94135 7.04062 7.69027 8.31393 9.21242 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002220 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.654949 B =12611.988638 C =13017.038252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.260 3.740 3 N -0.509 5.509 4 C 0.033 3.967 5 C -0.062 4.062 6 C -0.080 4.080 7 C -0.107 4.107 8 C 0.561 3.439 9 O -0.576 6.576 10 N -0.587 5.587 11 C 0.053 3.947 12 C 0.145 3.855 13 H 0.078 0.922 14 C 0.133 3.867 15 N -0.621 5.621 16 C -0.246 4.246 17 H 0.086 0.914 18 C -0.063 4.063 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.281 1.281 24 C 0.163 3.837 25 C 0.086 3.914 26 H 0.093 0.907 27 O -0.572 6.572 28 C -0.042 4.042 29 C -0.021 4.021 30 O -0.221 6.221 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.249 0.751 42 H 0.016 0.984 43 H 0.027 0.973 44 H 0.393 0.607 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.501 12.594 3.019 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 N -0.240 5.240 4 C -0.080 4.080 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.111 4.111 8 C 0.350 3.650 9 O -0.457 6.457 10 N -0.317 5.317 11 C -0.088 4.088 12 C 0.039 3.961 13 H 0.096 0.904 14 C 0.007 3.993 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.103 0.897 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.207 1.207 24 C 0.038 3.962 25 C 0.025 3.975 26 H 0.110 0.890 27 O -0.379 6.379 28 C -0.062 4.062 29 C -0.071 4.071 30 O -0.113 6.113 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.045 0.955 44 H 0.243 0.757 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.952 12.253 3.266 28.885 hybrid contribution 1.864 -1.436 -0.365 2.381 sum -24.089 10.817 2.901 26.565 Atomic orbital electron populations 1.20828 0.76933 1.07356 1.07100 1.27760 0.98419 0.77307 0.91476 1.70672 1.00816 1.29675 1.22827 1.20451 0.93300 0.91123 1.03089 1.20285 0.87163 1.01857 0.98774 1.21483 1.00193 0.91384 0.96827 1.19420 0.90836 0.94875 1.05951 1.18460 0.84042 0.83626 0.78867 1.90796 1.83750 1.27977 1.43128 1.47581 1.12524 1.23867 1.47704 1.22600 1.04876 0.83579 0.97718 1.21956 0.82369 0.94782 0.96953 0.90399 1.21911 0.84674 0.99512 0.93246 1.44484 1.01664 1.59859 1.28820 1.19410 0.89657 1.24459 1.03935 0.89662 1.25680 0.97546 1.01922 1.00516 1.70135 1.08186 1.48596 1.32800 0.85118 0.77069 0.78385 0.78534 1.19798 1.22003 1.20692 1.21608 0.92446 0.94264 0.87930 1.23325 0.94271 0.98773 0.81128 0.88980 1.86482 1.55307 1.74845 1.21243 1.19740 0.86772 1.00569 0.99110 1.20058 0.83975 0.94883 1.08170 1.84506 1.15094 1.37175 1.74561 0.86042 0.86873 0.86039 0.81063 0.80536 0.89115 0.89636 0.88262 0.94032 0.92538 0.94204 0.96549 0.95504 0.75748 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.51 71.23 0.75 0.44 16 2 C 0.26 4.38 8.23 88.38 0.73 5.11 16 3 N -0.51 -10.70 11.33 -296.04 -3.35 -14.05 16 4 C 0.03 0.72 7.24 39.47 0.29 1.01 16 5 C -0.06 -1.05 10.03 22.20 0.22 -0.83 16 6 C -0.08 -1.38 7.49 22.26 0.17 -1.22 16 7 C -0.11 -2.65 5.23 -20.06 -0.10 -2.76 16 8 C 0.56 17.96 7.33 86.72 0.64 18.60 16 9 O -0.58 -24.06 16.29 -3.94 -0.06 -24.12 16 10 N -0.59 -17.12 2.91 -818.48 -2.38 -19.50 16 11 C 0.05 0.98 7.64 127.77 0.98 1.95 16 12 C 0.14 5.46 3.17 46.38 0.15 5.61 16 13 H 0.08 3.59 7.02 -2.38 -0.02 3.57 16 14 C 0.13 5.35 6.78 86.86 0.59 5.94 16 15 N -0.62 -31.49 3.39 -691.90 -2.35 -33.84 16 16 C -0.25 -13.63 10.28 84.04 0.86 -12.77 16 17 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 18 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 19 N -0.95 -56.12 10.31 21.65 0.22 -55.89 16 20 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 C 0.16 7.89 5.15 86.74 0.45 8.34 16 25 C 0.09 3.15 3.91 31.80 0.12 3.28 16 26 H 0.09 2.77 7.21 -2.39 -0.02 2.76 16 27 O -0.57 -20.72 13.39 -148.98 -1.99 -22.71 16 28 C -0.04 -1.08 9.64 22.57 0.22 -0.86 16 29 C -0.02 -0.51 7.42 22.84 0.17 -0.34 16 30 O -0.22 -4.84 10.77 -9.59 -0.10 -4.94 16 31 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.18 2.09 5.30 -2.91 -0.02 2.08 16 36 H 0.09 1.18 6.88 -2.38 -0.02 1.16 16 37 H 0.09 1.63 6.15 -2.38 -0.01 1.62 16 38 H 0.10 1.43 5.83 -2.39 -0.01 1.42 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.99 6.13 -2.38 -0.01 1.98 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.02 0.92 7.29 -2.39 -0.02 0.90 16 43 H 0.03 1.39 7.51 -2.39 -0.02 1.37 16 44 H 0.39 10.67 9.12 -74.06 -0.68 10.00 16 45 H 0.14 3.58 8.05 -2.91 -0.02 3.56 16 Total: -1.00 -82.08 368.06 -0.93 -83.01 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.38 Total: 16.30 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 6.68 Total: 28.41 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -7.86 Total: -123.28 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.16 Total: -51.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -82.08 -0.93 -83.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047414781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.085 kcal (2) G-P(sol) polarization free energy of solvation -82.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds