Wall clock time and date at job start Wed Apr 1 2020 03:56:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.29871 * 124.83395 * 2 1
4 4 C 1.36121 * 108.76370 * 179.97438 * 3 2 1
5 5 C 1.39269 * 133.76171 * 179.97438 * 4 3 2
6 6 C 1.39192 * 119.46772 * 180.02562 * 5 4 3
7 7 C 1.47715 * 119.95442 * 180.02562 * 6 5 4
8 8 O 1.21573 * 119.99954 * 328.59738 * 7 6 5
9 9 N 1.34779 * 120.00294 * 148.59218 * 7 6 5
10 10 C 1.46500 * 119.99841 * 3.61186 * 9 7 6
11 11 C 1.46494 * 120.00207 * 183.60602 * 9 7 6
12 12 H 1.08997 * 110.88946 * 0.70074 * 11 9 7
13 13 C 1.54912 * 111.00468 * 124.58212 * 11 9 7
14 14 N 1.47428 * 104.83414 * 155.08378 * 13 11 9
15 15 C 1.36931 * 125.64876 * 155.83766 * 14 13 11
16 16 H 1.07997 * 120.00222 * 353.79615 * 15 14 13
17 17 C 1.38809 * 120.00042 * 173.80412 * 15 14 13
18 18 N 1.31622 * 120.00384 * 6.95832 * 17 15 14
19 19 Si 1.86798 * 120.00323 * 186.96048 * 17 15 14
20 20 H 1.48500 * 109.46962 * 94.97982 * 19 17 15
21 21 H 1.48499 * 109.47436 * 214.98099 * 19 17 15
22 22 H 1.48497 * 109.46922 * 334.98400 * 19 17 15
23 23 C 1.47028 * 108.70052 * 335.87250 * 14 13 11
24 24 C 1.54366 * 107.28974 * 1.09491 * 23 14 13
25 25 H 1.09002 * 110.70562 * 263.79136 * 24 23 14
26 26 O 1.42898 * 110.75844 * 140.50464 * 24 23 14
27 27 C 1.40050 * 120.09664 * 359.97438 * 6 5 4
28 28 C 1.36534 * 120.47220 * 0.02562 * 27 6 5
29 29 C 1.38891 * 120.19012 * 359.97438 * 28 27 6
30 30 O 1.34246 * 124.83401 * 179.97438 * 2 1 3
31 31 H 1.09003 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.47579 * 300.03311 * 1 2 3
33 33 H 1.09005 * 109.46831 * 60.03074 * 1 2 3
34 34 H 1.07997 * 120.26743 * 359.97438 * 5 4 3
35 35 H 1.08991 * 109.47385 * 94.56095 * 10 9 7
36 36 H 1.08994 * 109.47037 * 214.56787 * 10 9 7
37 37 H 1.09008 * 109.46869 * 334.56385 * 10 9 7
38 38 H 1.08999 * 110.36524 * 273.92116 * 13 11 9
39 39 H 1.09000 * 110.36395 * 36.13571 * 13 11 9
40 40 H 0.96993 * 120.00658 * 180.02562 * 18 17 15
41 41 H 1.09005 * 109.87835 * 120.47610 * 23 14 13
42 42 H 1.08998 * 109.87941 * 241.64050 * 23 14 13
43 43 H 0.96698 * 113.99997 * 66.48178 * 26 24 23
44 44 H 1.08001 * 119.76532 * 180.02562 * 27 6 5
45 45 H 1.07995 * 119.90441 * 180.27676 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2488 1.0660 0.0000
4 6 3.5569 0.6892 0.0006
5 6 4.7609 1.3891 0.0004
6 6 5.9619 0.6855 0.0006
7 6 7.2452 1.4169 0.0010
8 8 7.3285 2.4987 -0.5475
9 7 8.3239 0.8851 0.6095
10 6 8.2456 -0.4526 1.2016
11 6 9.5747 1.6446 0.6786
12 1 9.4638 2.6199 0.2046
13 6 10.0552 1.7909 2.1440
14 7 11.5130 1.9874 2.0453
15 6 12.2997 2.6076 2.9789
16 1 11.8466 3.0903 3.8321
17 6 13.6796 2.6161 2.8285
18 7 14.2242 2.1504 1.7245
19 14 14.7638 3.2884 4.1930
20 1 15.2198 2.1713 5.0587
21 1 15.9432 3.9676 3.5990
22 1 13.9902 4.2607 5.0062
23 6 11.9821 1.4080 0.7780
24 6 10.7451 0.8479 0.0440
25 1 10.6336 -0.2193 0.2357
26 8 10.8294 1.1048 -1.3592
27 6 5.9554 -0.7150 0.0016
28 6 4.7754 -1.4019 0.0018
29 6 3.5678 -0.7158 0.0015
30 8 2.2738 -1.1019 0.0005
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5143 0.8897
33 1 -0.3633 0.5134 -0.8903
34 1 4.7628 2.4690 -0.0008
35 1 8.6031 -1.1897 0.4828
36 1 8.8641 -0.4897 2.0983
37 1 7.2110 -0.6735 1.4645
38 1 9.5866 2.6564 2.6123
39 1 9.8302 0.8863 2.7090
40 1 15.1884 2.1559 1.6195
41 1 12.4551 2.1795 0.1704
42 1 12.6906 0.6042 0.9778
43 1 11.5453 0.6304 -1.8036
44 1 6.8904 -1.2556 0.0022
45 1 4.7810 -2.4818 0.0070
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001047424050.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:41
Heat of formation + Delta-G solvation = 17.534574 kcal
Electronic energy + Delta-G solvation = -29952.207583 eV
Core-core repulsion = 25745.599543 eV
Total energy + Delta-G solvation = -4206.608040 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-43.61876 -40.43856 -38.36754 -37.39839 -35.45906 -35.16301 -34.82093 -32.36303
-31.72461 -31.12931 -29.22547 -28.13118 -27.27936 -26.93103 -24.80176 -23.82277
-22.76646 -21.93339 -21.06302 -20.44972 -19.30603 -18.61504 -17.69090 -17.23070
-17.12271 -16.87693 -16.29789 -15.97796 -15.26123 -15.17367 -14.59088 -14.49041
-14.25690 -14.08842 -13.94723 -13.75267 -13.62070 -13.24206 -13.11325 -12.89916
-12.78729 -12.61330 -12.35133 -12.12627 -12.03449 -11.76602 -11.47767 -11.31057
-11.25308 -10.87730 -10.83872 -10.80881 -10.17293 -9.97216 -9.88085 -9.83437
-9.31323 -9.11533 -8.81289 -8.72475 -8.41588 -6.94297 -5.80450 -3.14954
0.34935 0.53657 2.00640 2.07607 2.69842 2.91124 3.36728 3.42026
3.44164 3.44750 3.45662 4.12170 4.28101 4.42597 4.51232 4.64431
4.67183 4.68370 4.86060 4.91670 4.99131 5.08420 5.13998 5.18252
5.34782 5.41211 5.43845 5.55512 5.60804 5.67005 5.70453 5.79563
5.80394 5.86801 5.88035 6.01196 6.11347 6.16712 6.43951 6.54117
6.82646 7.23154 7.33425 7.42131 7.48543 7.71078 8.13213 8.17705
8.22035 9.10843 9.71146 10.34412 11.31280
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.025841 B = 0.002195 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.296682 B =12751.694161 C =13055.632065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.244 3.756
3 N -0.473 5.473
4 C 0.014 3.986
5 C 0.000 4.000
6 C -0.124 4.124
7 C 0.561 3.439
8 O -0.526 6.526
9 N -0.592 5.592
10 C 0.052 3.948
11 C 0.133 3.867
12 H 0.117 0.883
13 C 0.131 3.869
14 N -0.598 5.598
15 C -0.232 4.232
16 H 0.081 0.919
17 C -0.005 4.005
18 N -0.920 5.920
19 Si 0.914 3.086
20 H -0.288 1.288
21 H -0.290 1.290
22 H -0.280 1.280
23 C 0.152 3.848
24 C 0.066 3.934
25 H 0.056 0.944
26 O -0.560 6.560
27 C -0.077 4.077
28 C -0.099 4.099
29 C 0.025 3.975
30 O -0.213 6.213
31 H 0.092 0.908
32 H 0.103 0.897
33 H 0.103 0.897
34 H 0.148 0.852
35 H 0.062 0.938
36 H 0.083 0.917
37 H 0.087 0.913
38 H 0.049 0.951
39 H 0.028 0.972
40 H 0.254 0.746
41 H 0.057 0.943
42 H 0.051 0.949
43 H 0.374 0.626
44 H 0.163 0.837
45 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.637 -11.977 -3.751 26.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.032 3.968
3 N -0.203 5.203
4 C -0.097 4.097
5 C -0.019 4.019
6 C -0.128 4.128
7 C 0.349 3.651
8 O -0.403 6.403
9 N -0.323 5.323
10 C -0.091 4.091
11 C 0.030 3.970
12 H 0.135 0.865
13 C 0.004 3.996
14 N -0.326 5.326
15 C -0.360 4.360
16 H 0.099 0.901
17 C -0.202 4.202
18 N -0.567 5.567
19 Si 0.744 3.256
20 H -0.215 1.215
21 H -0.217 1.217
22 H -0.205 1.205
23 C 0.027 3.973
24 C 0.005 3.995
25 H 0.074 0.926
26 O -0.364 6.364
27 C -0.095 4.095
28 C -0.117 4.117
29 C -0.026 4.026
30 O -0.105 6.105
31 H 0.111 0.889
32 H 0.121 0.879
33 H 0.121 0.879
34 H 0.166 0.834
35 H 0.080 0.920
36 H 0.101 0.899
37 H 0.105 0.895
38 H 0.067 0.933
39 H 0.045 0.955
40 H 0.064 0.936
41 H 0.075 0.925
42 H 0.069 0.931
43 H 0.220 0.780
44 H 0.180 0.820
45 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -24.072 -10.343 -3.873 26.485
hybrid contribution 1.419 -0.867 0.590 1.765
sum -22.653 -11.210 -3.283 25.487
Atomic orbital electron populations
1.20424 0.80694 1.05243 1.05664 1.26520 0.96693 0.78152 0.95406
1.70635 1.00763 1.28912 1.20011 1.19683 0.92014 0.91214 1.06788
1.20351 0.87264 1.00945 0.93355 1.19778 0.93474 0.93732 1.05855
1.18018 0.83029 0.85268 0.78807 1.90816 1.84287 1.21353 1.43823
1.47571 1.11484 1.17557 1.55709 1.22516 1.03545 0.83595 0.99413
1.22453 0.80458 0.96375 0.97744 0.86524 1.21783 0.86797 0.98950
0.92090 1.44235 1.00703 1.67802 1.19868 1.19072 0.87670 1.28263
1.00952 0.90104 1.24845 0.96574 1.01051 0.97735 1.69946 1.10227
1.51701 1.24823 0.86063 0.80214 0.78234 0.81054 1.21543 1.21688
1.20512 1.21861 0.90918 0.97865 0.86701 1.23539 0.97256 0.97265
0.81404 0.92599 1.86511 1.56352 1.73013 1.20564 1.21587 0.98628
0.93177 0.96156 1.19557 0.86893 1.00588 1.04702 1.20527 0.83872
0.94489 1.03727 1.84481 1.15320 1.36351 1.74358 0.88900 0.87868
0.87884 0.83426 0.91978 0.89893 0.89501 0.93289 0.95458 0.93598
0.92494 0.93055 0.77975 0.81992 0.84013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16
2 C 0.24 2.28 8.23 -13.11 -0.11 2.17 16
3 N -0.47 -5.88 11.34 -8.72 -0.10 -5.98 16
4 C 0.01 0.18 7.23 -84.73 -0.61 -0.43 16
5 C 0.00 0.01 9.65 -38.84 -0.37 -0.37 16
6 C -0.12 -1.61 5.47 -104.99 -0.57 -2.19 16
7 C 0.56 9.16 7.44 -12.39 -0.09 9.07 16
8 O -0.53 -10.71 16.11 5.30 0.09 -10.62 16
9 N -0.59 -9.08 2.91 -172.64 -0.50 -9.58 16
10 C 0.05 0.56 7.71 59.85 0.46 1.02 16
11 C 0.13 2.53 3.18 -65.78 -0.21 2.32 16
12 H 0.12 2.59 7.02 -51.93 -0.36 2.22 16
13 C 0.13 2.67 6.81 -2.53 -0.02 2.65 16
14 N -0.60 -14.98 3.39 -170.04 -0.58 -15.55 16
15 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16
16 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16
17 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16
18 N -0.92 -26.44 10.36 55.49 0.58 -25.86 16
19 Si 0.91 21.78 29.56 -169.99 -5.02 16.76 16
20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
23 C 0.15 3.59 5.16 -3.04 -0.02 3.57 16
24 C 0.07 1.24 3.91 -24.87 -0.10 1.14 16
25 H 0.06 0.93 7.05 -51.93 -0.37 0.56 16
26 O -0.56 -10.29 13.39 -35.23 -0.47 -10.76 16
27 C -0.08 -0.75 7.36 -39.52 -0.29 -1.05 16
28 C -0.10 -0.89 9.99 -39.95 -0.40 -1.29 16
29 C 0.02 0.28 7.43 -38.49 -0.29 -0.01 16
30 O -0.21 -2.20 10.77 3.81 0.04 -2.16 16
31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16
32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16
34 H 0.15 2.03 7.94 -52.49 -0.42 1.61 16
35 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16
36 H 0.08 0.93 6.10 -51.93 -0.32 0.61 16
37 H 0.09 0.75 4.74 -51.92 -0.25 0.51 16
38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.03 0.52 6.07 -51.93 -0.32 0.20 16
40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
41 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16
42 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16
43 H 0.37 5.24 9.12 45.56 0.42 5.65 16
44 H 0.16 1.24 4.73 -52.49 -0.25 0.99 16
45 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16
LS Contribution 366.51 15.07 5.52 5.52
Total: -1.00 -36.21 366.51 -7.60 -43.80
By element:
Atomic # 1 Polarization: 9.09 SS G_CDS: -4.66 Total: 4.43 kcal
Atomic # 6 Polarization: 12.50 SS G_CDS: -2.49 Total: 10.01 kcal
Atomic # 7 Polarization: -56.38 SS G_CDS: -0.60 Total: -56.98 kcal
Atomic # 8 Polarization: -23.20 SS G_CDS: -0.35 Total: -23.55 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -36.21 -7.60 -43.80 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047424050.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.338 kcal
(2) G-P(sol) polarization free energy of solvation -36.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds