Wall clock time and date at job start Wed Apr 1 2020 03:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29871 * 124.83395 * 2 1 4 4 C 1.36121 * 108.76370 * 179.97438 * 3 2 1 5 5 C 1.39269 * 133.76171 * 179.97438 * 4 3 2 6 6 C 1.39192 * 119.46772 * 180.02562 * 5 4 3 7 7 C 1.47715 * 119.95442 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99954 * 328.59738 * 7 6 5 9 9 N 1.34779 * 120.00294 * 148.59218 * 7 6 5 10 10 C 1.46500 * 119.99841 * 3.61186 * 9 7 6 11 11 C 1.46494 * 120.00207 * 183.60602 * 9 7 6 12 12 H 1.08997 * 110.88946 * 0.70074 * 11 9 7 13 13 C 1.54912 * 111.00468 * 124.58212 * 11 9 7 14 14 N 1.47428 * 104.83414 * 155.08378 * 13 11 9 15 15 C 1.36931 * 125.64876 * 155.83766 * 14 13 11 16 16 H 1.07997 * 120.00222 * 353.79615 * 15 14 13 17 17 C 1.38809 * 120.00042 * 173.80412 * 15 14 13 18 18 N 1.31622 * 120.00384 * 6.95832 * 17 15 14 19 19 Si 1.86798 * 120.00323 * 186.96048 * 17 15 14 20 20 H 1.48500 * 109.46962 * 94.97982 * 19 17 15 21 21 H 1.48499 * 109.47436 * 214.98099 * 19 17 15 22 22 H 1.48497 * 109.46922 * 334.98400 * 19 17 15 23 23 C 1.47028 * 108.70052 * 335.87250 * 14 13 11 24 24 C 1.54366 * 107.28974 * 1.09491 * 23 14 13 25 25 H 1.09002 * 110.70562 * 263.79136 * 24 23 14 26 26 O 1.42898 * 110.75844 * 140.50464 * 24 23 14 27 27 C 1.40050 * 120.09664 * 359.97438 * 6 5 4 28 28 C 1.36534 * 120.47220 * 0.02562 * 27 6 5 29 29 C 1.38891 * 120.19012 * 359.97438 * 28 27 6 30 30 O 1.34246 * 124.83401 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47579 * 300.03311 * 1 2 3 33 33 H 1.09005 * 109.46831 * 60.03074 * 1 2 3 34 34 H 1.07997 * 120.26743 * 359.97438 * 5 4 3 35 35 H 1.08991 * 109.47385 * 94.56095 * 10 9 7 36 36 H 1.08994 * 109.47037 * 214.56787 * 10 9 7 37 37 H 1.09008 * 109.46869 * 334.56385 * 10 9 7 38 38 H 1.08999 * 110.36524 * 273.92116 * 13 11 9 39 39 H 1.09000 * 110.36395 * 36.13571 * 13 11 9 40 40 H 0.96993 * 120.00658 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.87835 * 120.47610 * 23 14 13 42 42 H 1.08998 * 109.87941 * 241.64050 * 23 14 13 43 43 H 0.96698 * 113.99997 * 66.48178 * 26 24 23 44 44 H 1.08001 * 119.76532 * 180.02562 * 27 6 5 45 45 H 1.07995 * 119.90441 * 180.27676 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7609 1.3891 0.0004 6 6 5.9619 0.6855 0.0006 7 6 7.2452 1.4169 0.0010 8 8 7.3285 2.4987 -0.5475 9 7 8.3239 0.8851 0.6095 10 6 8.2456 -0.4526 1.2016 11 6 9.5747 1.6446 0.6786 12 1 9.4638 2.6199 0.2046 13 6 10.0552 1.7909 2.1440 14 7 11.5130 1.9874 2.0453 15 6 12.2997 2.6076 2.9789 16 1 11.8466 3.0903 3.8321 17 6 13.6796 2.6161 2.8285 18 7 14.2242 2.1504 1.7245 19 14 14.7638 3.2884 4.1930 20 1 15.2198 2.1713 5.0587 21 1 15.9432 3.9676 3.5990 22 1 13.9902 4.2607 5.0062 23 6 11.9821 1.4080 0.7780 24 6 10.7451 0.8479 0.0440 25 1 10.6336 -0.2193 0.2357 26 8 10.8294 1.1048 -1.3592 27 6 5.9554 -0.7150 0.0016 28 6 4.7754 -1.4019 0.0018 29 6 3.5678 -0.7158 0.0015 30 8 2.2738 -1.1019 0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5143 0.8897 33 1 -0.3633 0.5134 -0.8903 34 1 4.7628 2.4690 -0.0008 35 1 8.6031 -1.1897 0.4828 36 1 8.8641 -0.4897 2.0983 37 1 7.2110 -0.6735 1.4645 38 1 9.5866 2.6564 2.6123 39 1 9.8302 0.8863 2.7090 40 1 15.1884 2.1559 1.6195 41 1 12.4551 2.1795 0.1704 42 1 12.6906 0.6042 0.9778 43 1 11.5453 0.6304 -1.8036 44 1 6.8904 -1.2556 0.0022 45 1 4.7810 -2.4818 0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047424050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:40 Heat of formation + Delta-G solvation = -12.266568 kcal Electronic energy + Delta-G solvation = -29953.499857 eV Core-core repulsion = 25745.599543 eV Total energy + Delta-G solvation = -4207.900314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.40410 -41.66375 -39.75377 -38.57310 -36.76905 -36.52631 -35.97263 -33.95380 -32.69791 -32.03359 -30.59086 -29.47563 -28.59963 -28.10367 -26.46736 -25.03057 -23.56368 -22.69313 -22.42918 -22.19559 -20.64356 -19.60611 -19.03670 -18.64719 -18.19522 -18.00260 -17.63168 -17.12385 -16.77680 -16.36810 -16.05986 -15.79578 -15.37253 -15.16121 -14.95424 -14.69439 -14.57939 -14.45387 -14.13097 -14.10065 -14.00613 -13.64414 -13.58168 -13.43863 -13.17287 -13.04575 -13.00149 -12.74515 -12.66935 -12.53398 -12.14303 -12.07051 -11.87968 -11.64433 -11.53325 -11.19800 -10.89476 -10.75132 -10.05660 -9.75367 -9.59269 -8.95054 -7.89829 -5.26744 -0.45497 -0.37798 1.24976 1.36092 1.46341 1.47890 1.55385 1.57449 1.72670 2.47027 2.48572 2.74821 3.11720 3.29445 3.30797 3.35258 3.57237 3.81106 3.82229 3.86603 3.96349 4.04700 4.10869 4.16611 4.24727 4.41435 4.49212 4.57734 4.58908 4.61394 4.63174 4.75127 4.79866 4.89555 4.91772 4.99349 5.02333 5.05507 5.22407 5.32833 5.39964 5.42214 5.47306 5.65519 6.12379 6.25601 6.45996 6.86918 6.96599 7.03522 7.68269 8.31265 9.20265 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.002195 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.296682 B =12751.694161 C =13055.632065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.257 3.743 3 N -0.518 5.518 4 C -0.007 4.007 5 C -0.022 4.022 6 C -0.128 4.128 7 C 0.558 3.442 8 O -0.581 6.581 9 N -0.587 5.587 10 C 0.039 3.961 11 C 0.144 3.856 12 H 0.076 0.924 13 C 0.133 3.867 14 N -0.620 5.620 15 C -0.246 4.246 16 H 0.084 0.916 17 C -0.062 4.062 18 N -0.947 5.947 19 Si 0.981 3.019 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.270 1.270 23 C 0.163 3.837 24 C 0.086 3.914 25 H 0.094 0.906 26 O -0.572 6.572 27 C -0.071 4.071 28 C -0.078 4.078 29 C 0.017 3.983 30 O -0.212 6.212 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.249 0.751 41 H 0.012 0.988 42 H 0.031 0.969 43 H 0.393 0.607 44 H 0.193 0.807 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.701 -15.510 -2.986 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.046 3.954 3 N -0.248 5.248 4 C -0.117 4.117 5 C -0.042 4.042 6 C -0.132 4.132 7 C 0.348 3.652 8 O -0.461 6.461 9 N -0.317 5.317 10 C -0.101 4.101 11 C 0.039 3.961 12 H 0.094 0.906 13 C 0.007 3.993 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.102 0.898 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.195 1.195 23 C 0.037 3.963 24 C 0.026 3.974 25 H 0.112 0.888 26 O -0.379 6.379 27 C -0.088 4.088 28 C -0.096 4.096 29 C -0.035 4.035 30 O -0.104 6.104 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.049 0.951 43 H 0.243 0.757 44 H 0.210 0.790 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -26.169 -13.920 -3.093 29.802 hybrid contribution 1.907 0.238 0.326 1.950 sum -24.262 -13.682 -2.767 27.991 Atomic orbital electron populations 1.20793 0.76918 1.07385 1.06903 1.27636 0.98305 0.77222 0.92231 1.70639 1.01010 1.30608 1.22576 1.19802 0.92067 0.92447 1.07421 1.20220 0.88319 1.00199 0.95462 1.19521 0.91152 0.95138 1.07434 1.18561 0.84112 0.84734 0.77836 1.90785 1.85175 1.23892 1.46279 1.47554 1.09719 1.18902 1.55495 1.22948 1.05662 0.81376 1.00075 1.21943 0.82400 0.95449 0.96328 0.90606 1.21901 0.84309 0.99745 0.93374 1.44501 1.02592 1.67760 1.19966 1.19438 0.88399 1.28216 1.01436 0.89812 1.25681 0.97898 1.02005 0.99915 1.70150 1.09981 1.53019 1.26404 0.85034 0.78011 0.77757 0.78352 1.20821 1.22307 1.19472 1.21626 0.92690 0.95797 0.86210 1.23316 0.94346 0.98699 0.81073 0.88803 1.86485 1.57335 1.73907 1.20205 1.21827 1.00291 0.91308 0.95406 1.20009 0.85349 1.02436 1.01783 1.20894 0.84998 0.93840 1.03721 1.84512 1.14957 1.36572 1.74353 0.86293 0.86432 0.86506 0.85653 0.88841 0.89769 0.86832 0.94240 0.92360 0.94153 0.97008 0.95098 0.75730 0.79040 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.24 0.75 0.44 16 2 C 0.26 4.35 8.23 88.40 0.73 5.07 16 3 N -0.52 -12.79 11.34 -296.34 -3.36 -16.15 16 4 C -0.01 -0.18 7.23 39.28 0.28 0.10 16 5 C -0.02 -0.62 9.65 22.75 0.22 -0.40 16 6 C -0.13 -3.25 5.47 -20.10 -0.11 -3.36 16 7 C 0.56 18.39 7.44 86.75 0.65 19.03 16 8 O -0.58 -25.09 16.11 -3.94 -0.06 -25.15 16 9 N -0.59 -17.28 2.91 -818.39 -2.38 -19.66 16 10 C 0.04 0.70 7.71 127.77 0.99 1.68 16 11 C 0.14 5.51 3.18 46.39 0.15 5.65 16 12 H 0.08 3.55 7.02 -2.39 -0.02 3.54 16 13 C 0.13 5.41 6.81 86.86 0.59 6.01 16 14 N -0.62 -31.65 3.39 -691.89 -2.35 -34.00 16 15 C -0.25 -13.72 10.26 84.03 0.86 -12.86 16 16 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 17 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 18 N -0.95 -56.03 10.36 21.65 0.22 -55.81 16 19 Si 0.98 45.34 29.56 68.60 2.03 47.37 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.16 7.88 5.16 86.74 0.45 8.32 16 24 C 0.09 3.18 3.91 31.80 0.12 3.31 16 25 H 0.09 2.80 7.05 -2.39 -0.02 2.79 16 26 O -0.57 -20.82 13.39 -148.98 -1.99 -22.81 16 27 C -0.07 -1.13 7.36 22.31 0.16 -0.96 16 28 C -0.08 -1.08 9.99 22.03 0.22 -0.86 16 29 C 0.02 0.34 7.43 22.98 0.17 0.51 16 30 O -0.21 -3.81 10.77 -9.28 -0.10 -3.91 16 31 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.13 3.90 7.94 -2.91 -0.02 3.87 16 35 H 0.09 1.15 7.17 -2.39 -0.02 1.13 16 36 H 0.08 1.53 6.10 -2.39 -0.01 1.52 16 37 H 0.11 1.45 4.74 -2.38 -0.01 1.44 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.06 6.07 -2.39 -0.01 2.05 16 40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.01 0.66 7.46 -2.38 -0.02 0.65 16 42 H 0.03 1.60 7.37 -2.39 -0.02 1.59 16 43 H 0.39 10.68 9.12 -74.06 -0.68 10.00 16 44 H 0.19 1.88 4.73 -2.91 -0.01 1.87 16 45 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -85.17 366.51 -0.92 -86.09 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.39 Total: 15.34 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 6.69 Total: 28.70 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -7.87 Total: -125.62 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -2.16 Total: -51.88 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.17 -0.92 -86.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047424050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.824 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds