Wall clock time and date at job start Wed Apr 1 2020 03:56:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.29871 * 124.83395 * 2 1
4 4 C 1.36121 * 108.76370 * 179.97438 * 3 2 1
5 5 C 1.39269 * 133.76171 * 179.97438 * 4 3 2
6 6 C 1.39192 * 119.46772 * 180.02562 * 5 4 3
7 7 C 1.47715 * 119.95442 * 180.02562 * 6 5 4
8 8 O 1.21573 * 119.99954 * 328.59738 * 7 6 5
9 9 N 1.34779 * 120.00294 * 148.59218 * 7 6 5
10 10 C 1.46500 * 119.99841 * 3.61186 * 9 7 6
11 11 C 1.46494 * 120.00207 * 183.60602 * 9 7 6
12 12 H 1.08997 * 110.88946 * 0.70074 * 11 9 7
13 13 C 1.54912 * 111.00468 * 124.58212 * 11 9 7
14 14 N 1.47428 * 104.83414 * 155.08378 * 13 11 9
15 15 C 1.36931 * 125.64876 * 155.83766 * 14 13 11
16 16 H 1.07997 * 120.00222 * 353.79615 * 15 14 13
17 17 C 1.38809 * 120.00042 * 173.80412 * 15 14 13
18 18 N 1.31622 * 120.00384 * 6.95832 * 17 15 14
19 19 Si 1.86798 * 120.00323 * 186.96048 * 17 15 14
20 20 H 1.48500 * 109.46962 * 94.97982 * 19 17 15
21 21 H 1.48499 * 109.47436 * 214.98099 * 19 17 15
22 22 H 1.48497 * 109.46922 * 334.98400 * 19 17 15
23 23 C 1.47028 * 108.70052 * 335.87250 * 14 13 11
24 24 C 1.54366 * 107.28974 * 1.09491 * 23 14 13
25 25 H 1.09002 * 110.70562 * 263.79136 * 24 23 14
26 26 O 1.42898 * 110.75844 * 140.50464 * 24 23 14
27 27 C 1.40050 * 120.09664 * 359.97438 * 6 5 4
28 28 C 1.36534 * 120.47220 * 0.02562 * 27 6 5
29 29 C 1.38891 * 120.19012 * 359.97438 * 28 27 6
30 30 O 1.34246 * 124.83401 * 179.97438 * 2 1 3
31 31 H 1.09003 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.47579 * 300.03311 * 1 2 3
33 33 H 1.09005 * 109.46831 * 60.03074 * 1 2 3
34 34 H 1.07997 * 120.26743 * 359.97438 * 5 4 3
35 35 H 1.08991 * 109.47385 * 94.56095 * 10 9 7
36 36 H 1.08994 * 109.47037 * 214.56787 * 10 9 7
37 37 H 1.09008 * 109.46869 * 334.56385 * 10 9 7
38 38 H 1.08999 * 110.36524 * 273.92116 * 13 11 9
39 39 H 1.09000 * 110.36395 * 36.13571 * 13 11 9
40 40 H 0.96993 * 120.00658 * 180.02562 * 18 17 15
41 41 H 1.09005 * 109.87835 * 120.47610 * 23 14 13
42 42 H 1.08998 * 109.87941 * 241.64050 * 23 14 13
43 43 H 0.96698 * 113.99997 * 66.48178 * 26 24 23
44 44 H 1.08001 * 119.76532 * 180.02562 * 27 6 5
45 45 H 1.07995 * 119.90441 * 180.27676 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2488 1.0660 0.0000
4 6 3.5569 0.6892 0.0006
5 6 4.7609 1.3891 0.0004
6 6 5.9619 0.6855 0.0006
7 6 7.2452 1.4169 0.0010
8 8 7.3285 2.4987 -0.5475
9 7 8.3239 0.8851 0.6095
10 6 8.2456 -0.4526 1.2016
11 6 9.5747 1.6446 0.6786
12 1 9.4638 2.6199 0.2046
13 6 10.0552 1.7909 2.1440
14 7 11.5130 1.9874 2.0453
15 6 12.2997 2.6076 2.9789
16 1 11.8466 3.0903 3.8321
17 6 13.6796 2.6161 2.8285
18 7 14.2242 2.1504 1.7245
19 14 14.7638 3.2884 4.1930
20 1 15.2198 2.1713 5.0587
21 1 15.9432 3.9676 3.5990
22 1 13.9902 4.2607 5.0062
23 6 11.9821 1.4080 0.7780
24 6 10.7451 0.8479 0.0440
25 1 10.6336 -0.2193 0.2357
26 8 10.8294 1.1048 -1.3592
27 6 5.9554 -0.7150 0.0016
28 6 4.7754 -1.4019 0.0018
29 6 3.5678 -0.7158 0.0015
30 8 2.2738 -1.1019 0.0005
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5143 0.8897
33 1 -0.3633 0.5134 -0.8903
34 1 4.7628 2.4690 -0.0008
35 1 8.6031 -1.1897 0.4828
36 1 8.8641 -0.4897 2.0983
37 1 7.2110 -0.6735 1.4645
38 1 9.5866 2.6564 2.6123
39 1 9.8302 0.8863 2.7090
40 1 15.1884 2.1559 1.6195
41 1 12.4551 2.1795 0.1704
42 1 12.6906 0.6042 0.9778
43 1 11.5453 0.6304 -1.8036
44 1 6.8904 -1.2556 0.0022
45 1 4.7810 -2.4818 0.0070
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001047424050.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:40
Heat of formation + Delta-G solvation = -12.266568 kcal
Electronic energy + Delta-G solvation = -29953.499857 eV
Core-core repulsion = 25745.599543 eV
Total energy + Delta-G solvation = -4207.900314 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-44.40410 -41.66375 -39.75377 -38.57310 -36.76905 -36.52631 -35.97263 -33.95380
-32.69791 -32.03359 -30.59086 -29.47563 -28.59963 -28.10367 -26.46736 -25.03057
-23.56368 -22.69313 -22.42918 -22.19559 -20.64356 -19.60611 -19.03670 -18.64719
-18.19522 -18.00260 -17.63168 -17.12385 -16.77680 -16.36810 -16.05986 -15.79578
-15.37253 -15.16121 -14.95424 -14.69439 -14.57939 -14.45387 -14.13097 -14.10065
-14.00613 -13.64414 -13.58168 -13.43863 -13.17287 -13.04575 -13.00149 -12.74515
-12.66935 -12.53398 -12.14303 -12.07051 -11.87968 -11.64433 -11.53325 -11.19800
-10.89476 -10.75132 -10.05660 -9.75367 -9.59269 -8.95054 -7.89829 -5.26744
-0.45497 -0.37798 1.24976 1.36092 1.46341 1.47890 1.55385 1.57449
1.72670 2.47027 2.48572 2.74821 3.11720 3.29445 3.30797 3.35258
3.57237 3.81106 3.82229 3.86603 3.96349 4.04700 4.10869 4.16611
4.24727 4.41435 4.49212 4.57734 4.58908 4.61394 4.63174 4.75127
4.79866 4.89555 4.91772 4.99349 5.02333 5.05507 5.22407 5.32833
5.39964 5.42214 5.47306 5.65519 6.12379 6.25601 6.45996 6.86918
6.96599 7.03522 7.68269 8.31265 9.20265
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.025841 B = 0.002195 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.296682 B =12751.694161 C =13055.632065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.257 3.743
3 N -0.518 5.518
4 C -0.007 4.007
5 C -0.022 4.022
6 C -0.128 4.128
7 C 0.558 3.442
8 O -0.581 6.581
9 N -0.587 5.587
10 C 0.039 3.961
11 C 0.144 3.856
12 H 0.076 0.924
13 C 0.133 3.867
14 N -0.620 5.620
15 C -0.246 4.246
16 H 0.084 0.916
17 C -0.062 4.062
18 N -0.947 5.947
19 Si 0.981 3.019
20 H -0.282 1.282
21 H -0.296 1.296
22 H -0.270 1.270
23 C 0.163 3.837
24 C 0.086 3.914
25 H 0.094 0.906
26 O -0.572 6.572
27 C -0.071 4.071
28 C -0.078 4.078
29 C 0.017 3.983
30 O -0.212 6.212
31 H 0.119 0.881
32 H 0.117 0.883
33 H 0.117 0.883
34 H 0.125 0.875
35 H 0.093 0.907
36 H 0.084 0.916
37 H 0.114 0.886
38 H 0.039 0.961
39 H 0.059 0.941
40 H 0.249 0.751
41 H 0.012 0.988
42 H 0.031 0.969
43 H 0.393 0.607
44 H 0.193 0.807
45 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.701 -15.510 -2.986 30.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.046 3.954
3 N -0.248 5.248
4 C -0.117 4.117
5 C -0.042 4.042
6 C -0.132 4.132
7 C 0.348 3.652
8 O -0.461 6.461
9 N -0.317 5.317
10 C -0.101 4.101
11 C 0.039 3.961
12 H 0.094 0.906
13 C 0.007 3.993
14 N -0.348 5.348
15 C -0.375 4.375
16 H 0.102 0.898
17 C -0.255 4.255
18 N -0.596 5.596
19 Si 0.808 3.192
20 H -0.208 1.208
21 H -0.223 1.223
22 H -0.195 1.195
23 C 0.037 3.963
24 C 0.026 3.974
25 H 0.112 0.888
26 O -0.379 6.379
27 C -0.088 4.088
28 C -0.096 4.096
29 C -0.035 4.035
30 O -0.104 6.104
31 H 0.137 0.863
32 H 0.136 0.864
33 H 0.135 0.865
34 H 0.143 0.857
35 H 0.112 0.888
36 H 0.102 0.898
37 H 0.132 0.868
38 H 0.058 0.942
39 H 0.076 0.924
40 H 0.058 0.942
41 H 0.030 0.970
42 H 0.049 0.951
43 H 0.243 0.757
44 H 0.210 0.790
45 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -26.169 -13.920 -3.093 29.802
hybrid contribution 1.907 0.238 0.326 1.950
sum -24.262 -13.682 -2.767 27.991
Atomic orbital electron populations
1.20793 0.76918 1.07385 1.06903 1.27636 0.98305 0.77222 0.92231
1.70639 1.01010 1.30608 1.22576 1.19802 0.92067 0.92447 1.07421
1.20220 0.88319 1.00199 0.95462 1.19521 0.91152 0.95138 1.07434
1.18561 0.84112 0.84734 0.77836 1.90785 1.85175 1.23892 1.46279
1.47554 1.09719 1.18902 1.55495 1.22948 1.05662 0.81376 1.00075
1.21943 0.82400 0.95449 0.96328 0.90606 1.21901 0.84309 0.99745
0.93374 1.44501 1.02592 1.67760 1.19966 1.19438 0.88399 1.28216
1.01436 0.89812 1.25681 0.97898 1.02005 0.99915 1.70150 1.09981
1.53019 1.26404 0.85034 0.78011 0.77757 0.78352 1.20821 1.22307
1.19472 1.21626 0.92690 0.95797 0.86210 1.23316 0.94346 0.98699
0.81073 0.88803 1.86485 1.57335 1.73907 1.20205 1.21827 1.00291
0.91308 0.95406 1.20009 0.85349 1.02436 1.01783 1.20894 0.84998
0.93840 1.03721 1.84512 1.14957 1.36572 1.74353 0.86293 0.86432
0.86506 0.85653 0.88841 0.89769 0.86832 0.94240 0.92360 0.94153
0.97008 0.95098 0.75730 0.79040 0.79802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.30 10.51 71.24 0.75 0.44 16
2 C 0.26 4.35 8.23 88.40 0.73 5.07 16
3 N -0.52 -12.79 11.34 -296.34 -3.36 -16.15 16
4 C -0.01 -0.18 7.23 39.28 0.28 0.10 16
5 C -0.02 -0.62 9.65 22.75 0.22 -0.40 16
6 C -0.13 -3.25 5.47 -20.10 -0.11 -3.36 16
7 C 0.56 18.39 7.44 86.75 0.65 19.03 16
8 O -0.58 -25.09 16.11 -3.94 -0.06 -25.15 16
9 N -0.59 -17.28 2.91 -818.39 -2.38 -19.66 16
10 C 0.04 0.70 7.71 127.77 0.99 1.68 16
11 C 0.14 5.51 3.18 46.39 0.15 5.65 16
12 H 0.08 3.55 7.02 -2.39 -0.02 3.54 16
13 C 0.13 5.41 6.81 86.86 0.59 6.01 16
14 N -0.62 -31.65 3.39 -691.89 -2.35 -34.00 16
15 C -0.25 -13.72 10.26 84.03 0.86 -12.86 16
16 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16
17 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16
18 N -0.95 -56.03 10.36 21.65 0.22 -55.81 16
19 Si 0.98 45.34 29.56 68.60 2.03 47.37 16
20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16
22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
23 C 0.16 7.88 5.16 86.74 0.45 8.32 16
24 C 0.09 3.18 3.91 31.80 0.12 3.31 16
25 H 0.09 2.80 7.05 -2.39 -0.02 2.79 16
26 O -0.57 -20.82 13.39 -148.98 -1.99 -22.81 16
27 C -0.07 -1.13 7.36 22.31 0.16 -0.96 16
28 C -0.08 -1.08 9.99 22.03 0.22 -0.86 16
29 C 0.02 0.34 7.43 22.98 0.17 0.51 16
30 O -0.21 -3.81 10.77 -9.28 -0.10 -3.91 16
31 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16
32 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16
33 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16
34 H 0.13 3.90 7.94 -2.91 -0.02 3.87 16
35 H 0.09 1.15 7.17 -2.39 -0.02 1.13 16
36 H 0.08 1.53 6.10 -2.39 -0.01 1.52 16
37 H 0.11 1.45 4.74 -2.38 -0.01 1.44 16
38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
39 H 0.06 2.06 6.07 -2.39 -0.01 2.05 16
40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
41 H 0.01 0.66 7.46 -2.38 -0.02 0.65 16
42 H 0.03 1.60 7.37 -2.39 -0.02 1.59 16
43 H 0.39 10.68 9.12 -74.06 -0.68 10.00 16
44 H 0.19 1.88 4.73 -2.91 -0.01 1.87 16
45 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16
Total: -1.00 -85.17 366.51 -0.92 -86.09
By element:
Atomic # 1 Polarization: 14.95 SS G_CDS: 0.39 Total: 15.34 kcal
Atomic # 6 Polarization: 22.01 SS G_CDS: 6.69 Total: 28.70 kcal
Atomic # 7 Polarization: -117.76 SS G_CDS: -7.87 Total: -125.62 kcal
Atomic # 8 Polarization: -49.72 SS G_CDS: -2.16 Total: -51.88 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal
Total: -85.17 -0.92 -86.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047424050.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.824 kcal
(2) G-P(sol) polarization free energy of solvation -85.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.267 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds