Wall clock time and date at job start Wed Apr 1 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29872 * 124.83027 * 2 1 4 4 C 1.36122 * 108.76393 * 179.97438 * 3 2 1 5 5 C 1.39266 * 133.76286 * 179.97438 * 4 3 2 6 6 C 1.39197 * 119.46820 * 180.02562 * 5 4 3 7 7 C 1.47725 * 119.94722 * 179.97438 * 6 5 4 8 8 O 1.21558 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99275 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99565 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.46647 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.71359 * 300.15426 * 11 10 9 13 13 C 1.52879 * 109.61568 * 179.85014 * 11 10 9 14 14 O 1.42968 * 109.30093 * 188.11614 * 13 11 10 15 15 C 1.42964 * 114.16239 * 62.44759 * 14 13 11 16 16 C 1.53286 * 109.22454 * 297.42043 * 15 14 13 17 17 N 1.47151 * 108.38621 * 52.30497 * 16 15 14 18 18 C 1.36939 * 120.98525 * 129.43642 * 17 16 15 19 19 H 1.07996 * 120.00613 * 210.19863 * 18 17 16 20 20 C 1.38813 * 119.99429 * 30.19687 * 18 17 16 21 21 N 1.31616 * 120.00608 * 12.91937 * 20 18 17 22 22 Si 1.86809 * 119.99821 * 192.91695 * 20 18 17 23 23 H 1.48500 * 109.46829 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46939 * 300.00072 * 22 20 18 25 25 H 1.48497 * 109.46694 * 60.00180 * 22 20 18 26 26 C 1.40038 * 120.09329 * 0.25497 * 6 5 4 27 27 C 1.36534 * 120.47903 * 359.45054 * 26 6 5 28 28 C 1.38895 * 120.18182 * 0.58098 * 27 26 6 29 29 O 1.34251 * 124.83694 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46805 * 299.98971 * 1 2 3 32 32 H 1.08997 * 109.47263 * 59.99576 * 1 2 3 33 33 H 1.08002 * 120.26792 * 0.02719 * 5 4 3 34 34 H 0.96995 * 119.99942 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.46593 * 60.00016 * 10 9 7 36 36 H 1.08998 * 109.46712 * 299.99956 * 10 9 7 37 37 H 1.09004 * 109.58208 * 68.10858 * 13 11 10 38 38 H 1.08998 * 109.36918 * 308.00103 * 13 11 10 39 39 H 1.09002 * 109.50390 * 177.49522 * 15 14 13 40 40 H 1.08998 * 109.54879 * 57.37356 * 15 14 13 41 41 H 1.08997 * 109.68326 * 292.57925 * 16 15 14 42 42 H 1.09003 * 109.71341 * 172.04369 * 16 15 14 43 43 H 0.96993 * 120.00660 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.75962 * 179.74371 * 26 6 5 45 45 H 1.07995 * 119.90630 * 180.23360 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0661 0.0000 4 6 3.5568 0.6893 0.0006 5 6 4.7608 1.3893 0.0004 6 6 5.9619 0.6857 0.0006 7 6 7.2452 1.4174 -0.0001 8 8 7.2518 2.6330 -0.0014 9 7 8.4087 0.7371 0.0006 10 6 9.6814 1.4627 -0.0007 11 6 10.8388 0.4621 -0.0002 12 1 10.7802 -0.1673 0.8878 13 6 12.1689 1.2158 -0.0053 14 8 13.2382 0.2861 -0.1953 15 6 13.1948 -0.4085 -1.4441 16 6 11.9150 -1.2496 -1.5096 17 7 10.7697 -0.3764 -1.2074 18 6 9.6744 -0.3408 -2.0286 19 1 9.0951 0.5663 -2.1171 20 6 9.3088 -1.4707 -2.7472 21 7 9.8450 -2.6372 -2.4572 22 14 8.0557 -1.3357 -4.1261 23 1 7.8397 -2.6745 -4.7313 24 1 6.7719 -0.8268 -3.5801 25 1 8.5591 -0.3988 -5.1623 26 6 5.9554 -0.7147 -0.0044 27 6 4.7755 -1.4017 0.0018 28 6 3.5679 -0.7156 0.0010 29 8 2.2739 -1.1019 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.7626 2.4693 0.0001 34 1 8.4034 -0.2328 0.0020 35 1 9.7427 2.0903 0.8883 36 1 9.7423 2.0877 -0.8916 37 1 12.3000 1.7320 0.9458 38 1 12.1695 1.9424 -0.8178 39 1 14.0640 -1.0609 -1.5280 40 1 13.1996 0.3115 -2.2623 41 1 11.9665 -2.0543 -0.7762 42 1 11.8022 -1.6703 -2.5088 43 1 9.5892 -3.4268 -2.9591 44 1 6.8904 -1.2551 -0.0083 45 1 4.7813 -2.4817 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050977024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:19 Heat of formation + Delta-G solvation = -6.966131 kcal Electronic energy + Delta-G solvation = -30580.249190 eV Core-core repulsion = 26372.578720 eV Total energy + Delta-G solvation = -4207.670470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.34883 -39.74999 -38.53640 -37.36161 -35.40382 -34.98224 -33.68014 -32.11752 -31.43843 -30.81187 -30.45320 -28.33588 -27.24550 -25.70115 -23.78168 -23.49864 -22.45286 -21.74146 -21.66655 -20.46159 -19.72673 -18.20900 -17.56774 -16.97651 -16.84230 -16.26458 -15.90717 -15.74462 -15.22045 -14.69659 -14.47264 -14.42556 -14.19016 -13.96440 -13.87093 -13.79219 -13.53858 -13.44499 -13.11339 -12.95689 -12.81034 -12.67723 -12.37756 -11.89221 -11.62441 -11.57807 -11.34098 -11.09631 -10.90782 -10.81460 -10.56453 -10.46107 -10.31935 -10.08730 -9.73649 -9.63219 -9.04591 -8.86622 -8.71587 -8.54663 -8.33418 -6.81090 -5.97396 -3.45802 0.65759 0.81644 2.28283 2.33475 3.05365 3.26121 3.32100 3.36482 3.42605 3.79549 3.93503 4.29276 4.41348 4.48870 4.74654 4.89796 4.96837 5.01938 5.07234 5.09168 5.20325 5.24184 5.31203 5.36854 5.54617 5.66939 5.76044 5.82219 5.96557 5.99108 6.02890 6.10816 6.11732 6.17280 6.22295 6.27022 6.29345 6.47153 6.48977 6.69580 6.98143 7.01642 7.42941 7.47448 7.64347 7.82209 8.07960 8.21708 8.67114 8.99095 9.59913 10.18573 11.08821 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.003261 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.500251 B = 8583.761778 C = 9708.402966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.238 3.762 3 N -0.473 5.473 4 C 0.009 3.991 5 C -0.001 4.001 6 C -0.124 4.124 7 C 0.555 3.445 8 O -0.555 6.555 9 N -0.686 5.686 10 C 0.135 3.865 11 C 0.125 3.875 12 H 0.042 0.958 13 C 0.056 3.944 14 O -0.392 6.392 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.260 4.260 19 H 0.074 0.926 20 C 0.013 3.987 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.289 1.289 24 H -0.278 1.278 25 H -0.282 1.282 26 C -0.052 4.052 27 C -0.098 4.098 28 C 0.026 3.974 29 O -0.214 6.214 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.092 0.908 43 H 0.257 0.743 44 H 0.153 0.847 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 1.419 5.876 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.026 3.974 3 N -0.203 5.203 4 C -0.102 4.102 5 C -0.021 4.021 6 C -0.129 4.129 7 C 0.341 3.659 8 O -0.436 6.436 9 N -0.338 5.338 10 C 0.011 3.989 11 C 0.017 3.983 12 H 0.060 0.940 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.187 4.187 21 N -0.541 5.541 22 Si 0.719 3.281 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.209 1.209 26 C -0.070 4.070 27 C -0.117 4.117 28 C -0.025 4.025 29 O -0.106 6.106 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.167 0.833 34 H 0.255 0.745 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.171 0.829 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.573 2.658 5.927 12.409 hybrid contribution -0.605 -1.287 -1.199 1.860 sum -11.178 1.371 4.728 12.214 Atomic orbital electron populations 1.20380 0.80890 1.05106 1.05448 1.26449 0.96625 0.78315 0.96025 1.70589 1.00849 1.28939 1.19962 1.19670 0.91970 0.91212 1.07375 1.20361 0.87283 1.00941 0.93489 1.19882 0.93729 0.93573 1.05669 1.17908 0.83640 0.86954 0.77361 1.90729 1.87728 1.13310 1.51787 1.45935 1.04553 1.11614 1.71692 1.21225 0.82157 0.94236 1.01288 1.21351 0.92492 0.92545 0.91865 0.94021 1.22788 0.87824 0.91130 1.00577 1.87810 1.47561 1.56945 1.38744 1.23345 1.00365 0.95571 0.85043 1.21412 0.83501 0.91005 1.02259 1.44078 1.16738 1.48008 1.22859 1.19223 1.04748 0.95472 1.19431 0.90824 1.25060 0.98469 0.94924 1.00216 1.69976 1.45262 0.98058 1.40795 0.86557 0.81759 0.76893 0.82892 1.21467 1.20413 1.20869 1.21103 0.98261 0.93104 0.94575 1.19552 0.86906 1.00740 1.04488 1.20520 0.83722 0.94518 1.03702 1.84467 1.15408 1.36258 1.74451 0.89014 0.88044 0.88051 0.83339 0.74545 0.91954 0.91188 0.89812 0.93470 0.90229 0.94089 0.95192 0.89006 0.93333 0.82906 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.00 16 2 C 0.24 2.89 8.23 -13.11 -0.11 2.78 16 3 N -0.47 -7.16 11.34 -8.72 -0.10 -7.26 16 4 C 0.01 0.14 7.23 -84.73 -0.61 -0.47 16 5 C 0.00 -0.02 9.64 -38.84 -0.37 -0.39 16 6 C -0.12 -2.10 5.87 -104.99 -0.62 -2.72 16 7 C 0.56 10.38 7.77 -12.38 -0.10 10.28 16 8 O -0.55 -11.64 16.33 5.31 0.09 -11.56 16 9 N -0.69 -12.48 3.70 -61.29 -0.23 -12.71 16 10 C 0.14 2.40 4.43 -4.04 -0.02 2.38 16 11 C 0.12 2.32 3.19 -67.64 -0.22 2.11 16 12 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 13 C 0.06 0.95 6.27 37.10 0.23 1.18 16 14 O -0.39 -7.39 10.74 -35.23 -0.38 -7.77 16 15 C 0.03 0.65 6.98 37.31 0.26 0.91 16 16 C 0.14 3.14 5.40 -3.54 -0.02 3.12 16 17 N -0.59 -13.01 3.04 -164.56 -0.50 -13.51 16 18 C -0.26 -6.16 7.11 -15.06 -0.11 -6.27 16 19 H 0.07 1.79 5.75 -52.49 -0.30 1.49 16 20 C 0.01 0.33 5.01 -17.43 -0.09 0.24 16 21 N -0.90 -23.10 11.19 55.49 0.62 -22.48 16 22 Si 0.89 20.37 29.57 -169.99 -5.03 15.35 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.05 -0.80 9.47 -39.52 -0.37 -1.17 16 27 C -0.10 -1.41 9.99 -39.95 -0.40 -1.81 16 28 C 0.03 0.40 7.43 -38.49 -0.29 0.11 16 29 O -0.21 -2.95 10.77 3.78 0.04 -2.91 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 2.44 7.64 -52.49 -0.40 2.04 16 34 H 0.42 7.66 5.33 -40.82 -0.22 7.45 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.22 6.32 -51.93 -0.33 1.89 16 43 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 44 H 0.15 2.29 6.37 -52.48 -0.33 1.96 16 45 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -30.46 369.29 -8.12 -38.58 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.76 Total: 8.42 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -2.44 Total: 10.29 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.20 Total: -55.96 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.25 Total: -22.24 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.46 -8.12 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050977024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.611 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds