Wall clock time and date at job start Wed Apr 1 2020 03:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29872 * 124.83027 * 2 1 4 4 C 1.36122 * 108.76393 * 179.97438 * 3 2 1 5 5 C 1.39266 * 133.76286 * 179.97438 * 4 3 2 6 6 C 1.39197 * 119.46820 * 180.02562 * 5 4 3 7 7 C 1.47725 * 119.94722 * 179.97438 * 6 5 4 8 8 O 1.21558 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99275 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99565 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.46647 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.71359 * 300.15426 * 11 10 9 13 13 C 1.52879 * 109.61568 * 179.85014 * 11 10 9 14 14 O 1.42968 * 109.30093 * 188.11614 * 13 11 10 15 15 C 1.42964 * 114.16239 * 62.44759 * 14 13 11 16 16 C 1.53286 * 109.22454 * 297.42043 * 15 14 13 17 17 N 1.47151 * 108.38621 * 52.30497 * 16 15 14 18 18 C 1.36939 * 120.98525 * 129.43642 * 17 16 15 19 19 H 1.07996 * 120.00613 * 210.19863 * 18 17 16 20 20 C 1.38813 * 119.99429 * 30.19687 * 18 17 16 21 21 N 1.31616 * 120.00608 * 12.91937 * 20 18 17 22 22 Si 1.86809 * 119.99821 * 192.91695 * 20 18 17 23 23 H 1.48500 * 109.46829 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46939 * 300.00072 * 22 20 18 25 25 H 1.48497 * 109.46694 * 60.00180 * 22 20 18 26 26 C 1.40038 * 120.09329 * 0.25497 * 6 5 4 27 27 C 1.36534 * 120.47903 * 359.45054 * 26 6 5 28 28 C 1.38895 * 120.18182 * 0.58098 * 27 26 6 29 29 O 1.34251 * 124.83694 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46805 * 299.98971 * 1 2 3 32 32 H 1.08997 * 109.47263 * 59.99576 * 1 2 3 33 33 H 1.08002 * 120.26792 * 0.02719 * 5 4 3 34 34 H 0.96995 * 119.99942 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.46593 * 60.00016 * 10 9 7 36 36 H 1.08998 * 109.46712 * 299.99956 * 10 9 7 37 37 H 1.09004 * 109.58208 * 68.10858 * 13 11 10 38 38 H 1.08998 * 109.36918 * 308.00103 * 13 11 10 39 39 H 1.09002 * 109.50390 * 177.49522 * 15 14 13 40 40 H 1.08998 * 109.54879 * 57.37356 * 15 14 13 41 41 H 1.08997 * 109.68326 * 292.57925 * 16 15 14 42 42 H 1.09003 * 109.71341 * 172.04369 * 16 15 14 43 43 H 0.96993 * 120.00660 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.75962 * 179.74371 * 26 6 5 45 45 H 1.07995 * 119.90630 * 180.23360 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0661 0.0000 4 6 3.5568 0.6893 0.0006 5 6 4.7608 1.3893 0.0004 6 6 5.9619 0.6857 0.0006 7 6 7.2452 1.4174 -0.0001 8 8 7.2518 2.6330 -0.0014 9 7 8.4087 0.7371 0.0006 10 6 9.6814 1.4627 -0.0007 11 6 10.8388 0.4621 -0.0002 12 1 10.7802 -0.1673 0.8878 13 6 12.1689 1.2158 -0.0053 14 8 13.2382 0.2861 -0.1953 15 6 13.1948 -0.4085 -1.4441 16 6 11.9150 -1.2496 -1.5096 17 7 10.7697 -0.3764 -1.2074 18 6 9.6744 -0.3408 -2.0286 19 1 9.0951 0.5663 -2.1171 20 6 9.3088 -1.4707 -2.7472 21 7 9.8450 -2.6372 -2.4572 22 14 8.0557 -1.3357 -4.1261 23 1 7.8397 -2.6745 -4.7313 24 1 6.7719 -0.8268 -3.5801 25 1 8.5591 -0.3988 -5.1623 26 6 5.9554 -0.7147 -0.0044 27 6 4.7755 -1.4017 0.0018 28 6 3.5679 -0.7156 0.0010 29 8 2.2739 -1.1019 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.7626 2.4693 0.0001 34 1 8.4034 -0.2328 0.0020 35 1 9.7427 2.0903 0.8883 36 1 9.7423 2.0877 -0.8916 37 1 12.3000 1.7320 0.9458 38 1 12.1695 1.9424 -0.8178 39 1 14.0640 -1.0609 -1.5280 40 1 13.1996 0.3115 -2.2623 41 1 11.9665 -2.0543 -0.7762 42 1 11.8022 -1.6703 -2.5088 43 1 9.5892 -3.4268 -2.9591 44 1 6.8904 -1.2551 -0.0083 45 1 4.7813 -2.4817 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050977024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:18 Heat of formation + Delta-G solvation = -28.471344 kcal Electronic energy + Delta-G solvation = -30581.181727 eV Core-core repulsion = 26372.578720 eV Total energy + Delta-G solvation = -4208.603006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.43979 -41.19817 -40.03841 -38.65529 -36.97299 -36.07286 -35.35140 -33.49194 -32.66493 -32.14115 -31.91405 -29.40791 -28.90337 -27.10849 -25.26437 -25.02773 -23.63284 -23.21422 -22.72503 -21.84213 -21.34890 -19.59324 -18.77671 -18.39917 -18.04510 -17.71188 -17.47731 -17.11964 -16.64318 -16.26166 -16.15473 -15.73232 -15.49115 -15.41102 -15.31505 -14.97316 -14.83821 -14.60466 -14.28077 -14.17554 -14.11501 -13.70237 -13.44478 -13.40730 -13.11543 -12.89676 -12.74795 -12.72681 -12.49569 -12.38658 -12.16630 -11.98293 -11.82583 -11.69050 -11.31492 -11.15223 -10.65837 -10.54521 -10.16070 -9.81984 -9.68807 -8.62045 -7.86759 -5.35291 -0.48751 -0.42662 1.20810 1.31404 1.40491 1.45864 1.49474 1.70625 2.11292 2.44658 2.60410 2.76395 3.05163 3.25570 3.28970 3.45020 3.63477 3.79944 3.85734 3.93469 4.06207 4.12291 4.23366 4.35444 4.49434 4.53190 4.59176 4.61504 4.63141 4.65597 4.68276 4.76316 4.76907 4.86403 5.00375 5.01711 5.04369 5.13340 5.18965 5.31382 5.32101 5.49922 5.64892 5.70849 6.31115 6.37905 6.40550 6.59194 7.11810 7.18626 7.77864 8.33707 9.17415 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.003261 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.500251 B = 8583.761778 C = 9708.402966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.255 3.745 3 N -0.510 5.510 4 C -0.004 4.004 5 C -0.013 4.013 6 C -0.134 4.134 7 C 0.556 3.444 8 O -0.582 6.582 9 N -0.685 5.685 10 C 0.139 3.861 11 C 0.126 3.874 12 H 0.042 0.958 13 C 0.057 3.943 14 O -0.397 6.397 15 C 0.045 3.955 16 C 0.149 3.851 17 N -0.604 5.604 18 C -0.245 4.245 19 H 0.068 0.932 20 C -0.020 4.020 21 N -0.919 5.919 22 Si 0.930 3.070 23 H -0.292 1.292 24 H -0.279 1.279 25 H -0.291 1.291 26 C -0.059 4.059 27 C -0.088 4.088 28 C 0.016 3.984 29 O -0.214 6.214 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.066 0.934 43 H 0.251 0.749 44 H 0.155 0.845 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 1.308 6.575 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.044 3.956 3 N -0.240 5.240 4 C -0.114 4.114 5 C -0.033 4.033 6 C -0.138 4.138 7 C 0.343 3.657 8 O -0.465 6.465 9 N -0.335 5.335 10 C 0.015 3.985 11 C 0.020 3.980 12 H 0.059 0.941 13 C -0.022 4.022 14 O -0.316 6.316 15 C -0.032 4.032 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.375 4.375 19 H 0.085 0.915 20 C -0.217 4.217 21 N -0.564 5.564 22 Si 0.760 3.240 23 H -0.218 1.218 24 H -0.205 1.205 25 H -0.218 1.218 26 C -0.078 4.078 27 C -0.107 4.107 28 C -0.036 4.036 29 O -0.106 6.106 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.173 0.827 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.710 2.561 6.638 13.702 hybrid contribution -0.379 -1.224 -1.375 1.880 sum -12.089 1.337 5.263 13.253 Atomic orbital electron populations 1.20811 0.76528 1.07355 1.07109 1.27759 0.98436 0.77144 0.92257 1.70627 1.00510 1.30308 1.22537 1.19826 0.92449 0.91881 1.07254 1.20310 0.87727 1.00701 0.94547 1.19774 0.92904 0.94215 1.06918 1.18148 0.84247 0.86675 0.76621 1.90702 1.88155 1.14449 1.53213 1.45934 1.04729 1.11501 1.71379 1.21221 0.81702 0.93941 1.01598 1.21475 0.93986 0.92280 0.90266 0.94058 1.22920 0.86139 0.90571 1.02541 1.87814 1.48023 1.57148 1.38575 1.23213 0.99363 0.95407 0.85249 1.21244 0.85197 0.91169 1.00067 1.44260 1.16445 1.48304 1.23992 1.19235 1.04544 0.94799 1.18939 0.91467 1.25387 0.99744 0.94943 1.01626 1.70067 1.46505 0.98255 1.41615 0.85924 0.80608 0.76154 0.81275 1.21835 1.20512 1.21828 1.21104 0.98912 0.92419 0.95332 1.19802 0.86158 1.01984 1.02711 1.20684 0.84664 0.94239 1.03970 1.84504 1.14783 1.36883 1.74452 0.86490 0.86012 0.86341 0.84053 0.74697 0.89641 0.92792 0.86330 0.93330 0.87832 0.93960 0.97189 0.91608 0.93924 0.82732 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.26 5.68 8.23 88.40 0.73 6.40 16 3 N -0.51 -15.01 11.34 -296.34 -3.36 -18.37 16 4 C 0.00 -0.12 7.23 39.28 0.28 0.16 16 5 C -0.01 -0.44 9.64 22.75 0.22 -0.22 16 6 C -0.13 -4.61 5.87 -20.10 -0.12 -4.73 16 7 C 0.56 21.07 7.77 86.75 0.67 21.74 16 8 O -0.58 -24.86 16.33 -3.90 -0.06 -24.92 16 9 N -0.69 -24.92 3.70 -466.10 -1.72 -26.65 16 10 C 0.14 4.84 4.43 86.38 0.38 5.22 16 11 C 0.13 4.56 3.19 44.82 0.14 4.70 16 12 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 13 C 0.06 1.80 6.27 71.94 0.45 2.25 16 14 O -0.40 -14.07 10.74 -148.98 -1.60 -15.67 16 15 C 0.05 1.63 6.98 72.08 0.50 2.13 16 16 C 0.15 6.50 5.40 86.35 0.47 6.97 16 17 N -0.60 -26.45 3.04 -674.53 -2.05 -28.50 16 18 C -0.25 -11.68 7.11 84.03 0.60 -11.08 16 19 H 0.07 3.30 5.75 -2.91 -0.02 3.28 16 20 C -0.02 -0.97 5.01 84.86 0.43 -0.54 16 21 N -0.92 -47.91 11.19 21.65 0.24 -47.67 16 22 Si 0.93 42.22 29.57 68.60 2.03 44.25 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C -0.06 -1.81 9.47 22.31 0.21 -1.60 16 27 C -0.09 -2.44 9.99 22.03 0.22 -2.22 16 28 C 0.02 0.46 7.43 22.98 0.17 0.63 16 29 O -0.21 -5.48 10.77 -9.38 -0.10 -5.58 16 30 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 4.89 7.64 -2.91 -0.02 4.86 16 34 H 0.41 15.35 5.33 -92.71 -0.49 14.85 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 37 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 39 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 3.22 6.32 -2.39 -0.02 3.21 16 43 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 44 H 0.16 4.64 6.37 -2.91 -0.02 4.62 16 45 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -66.21 369.29 0.03 -66.19 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.55 Total: 26.90 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 6.11 Total: 30.03 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -6.89 Total: -121.19 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.77 Total: -46.18 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -66.21 0.03 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050977024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.716 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds