Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29878 * 124.83024 * 2 1 4 4 C 1.36122 * 108.76346 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76523 * 179.97438 * 4 3 2 6 6 C 1.39190 * 119.46961 * 180.02562 * 5 4 3 7 7 C 1.47719 * 119.95321 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99894 * 359.97023 * 7 6 5 9 9 N 1.34773 * 120.00196 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00125 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47209 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.67586 * 59.09764 * 11 10 9 13 13 C 1.53286 * 109.68012 * 179.61637 * 11 10 9 14 14 O 1.42963 * 109.22069 * 172.02754 * 13 11 10 15 15 C 1.42965 * 114.16629 * 297.41797 * 14 13 11 16 16 C 1.53293 * 109.22322 * 62.58170 * 15 14 13 17 17 N 1.47156 * 109.68256 * 298.58326 * 11 10 9 18 18 C 1.36944 * 120.97976 * 9.70822 * 17 11 10 19 19 H 1.07996 * 119.99717 * 329.55813 * 18 17 11 20 20 C 1.38816 * 119.99584 * 149.56090 * 18 17 11 21 21 N 1.31613 * 119.99681 * 163.23189 * 20 18 17 22 22 Si 1.86798 * 120.00034 * 343.22936 * 20 18 17 23 23 H 1.48503 * 109.47077 * 88.92484 * 22 20 18 24 24 H 1.48497 * 109.47137 * 208.92035 * 22 20 18 25 25 H 1.48495 * 109.47256 * 328.92378 * 22 20 18 26 26 C 1.40054 * 120.09635 * 359.97438 * 6 5 4 27 27 C 1.36529 * 120.47085 * 359.97438 * 26 6 5 28 28 C 1.38896 * 120.18939 * 0.02562 * 27 26 6 29 29 O 1.34246 * 124.83806 * 180.29394 * 2 1 3 30 30 H 1.08998 * 109.46513 * 90.00675 * 1 2 3 31 31 H 1.09002 * 109.47035 * 210.00088 * 1 2 3 32 32 H 1.09001 * 109.47368 * 330.00383 * 1 2 3 33 33 H 1.07995 * 120.26465 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99987 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47567 * 300.00168 * 10 9 7 36 36 H 1.09000 * 109.46775 * 60.00233 * 10 9 7 37 37 H 1.09000 * 109.51732 * 291.95049 * 13 11 10 38 38 H 1.09002 * 109.51875 * 52.05680 * 13 11 10 39 39 H 1.09001 * 109.50993 * 182.50490 * 15 14 13 40 40 H 1.09001 * 109.51298 * 302.65121 * 15 14 13 41 41 H 1.08999 * 109.68292 * 67.42029 * 16 15 14 42 42 H 1.09000 * 109.68386 * 187.97451 * 16 15 14 43 43 H 0.96997 * 120.00133 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.76069 * 179.97438 * 26 6 5 45 45 H 1.07995 * 119.89808 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0661 0.0000 4 6 3.5569 0.6894 -0.0006 5 6 4.7609 1.3892 -0.0013 6 6 5.9619 0.6857 -0.0023 7 6 7.2452 1.4172 -0.0025 8 8 7.2519 2.6330 -0.0023 9 7 8.4087 0.7370 -0.0029 10 6 9.6814 1.4625 -0.0037 11 6 10.8389 0.4619 -0.0034 12 1 10.7716 -0.1774 -0.8837 13 6 12.1733 1.2161 -0.0139 14 8 13.2418 0.2849 0.1736 15 6 13.2083 -0.3994 1.4284 16 6 11.9268 -1.2364 1.5127 17 7 10.7807 -0.3631 1.2137 18 6 9.6929 -0.3181 2.0444 19 1 9.1196 0.5927 2.1344 20 6 9.3272 -1.4432 2.7706 21 7 8.5120 -1.3274 3.7973 22 14 9.9921 -3.1215 2.2905 23 1 11.2781 -3.3638 2.9924 24 1 9.0133 -4.1701 2.6748 25 1 10.2133 -3.1650 0.8228 26 6 5.9554 -0.7148 -0.0020 27 6 4.7755 -1.4017 -0.0003 28 6 3.5678 -0.7155 0.0007 29 8 2.2739 -1.1018 -0.0057 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 4.7627 2.4692 -0.0019 34 1 8.4034 -0.2330 -0.0035 35 1 9.7422 2.0887 -0.8938 36 1 9.7430 2.0889 0.8862 37 1 12.2970 1.7243 -0.9703 38 1 12.1833 1.9498 0.7922 39 1 14.0764 -1.0536 1.5096 40 1 13.2223 0.3278 2.2402 41 1 11.9693 -2.0472 0.7854 42 1 11.8226 -1.6482 2.5166 43 1 8.2561 -2.1136 4.3046 44 1 6.8904 -1.2553 -0.0033 45 1 4.7812 -2.4816 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050977025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = -0.836928 kcal Electronic energy + Delta-G solvation = -30561.394808 eV Core-core repulsion = 26353.990120 eV Total energy + Delta-G solvation = -4207.404688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29195 -39.74665 -38.76185 -37.33270 -35.51903 -34.93079 -33.76445 -32.11138 -31.61145 -31.06237 -30.67440 -28.32766 -27.52322 -25.73915 -23.82808 -23.45400 -22.47124 -22.10280 -21.61968 -20.44938 -19.95080 -18.16896 -17.52225 -16.92419 -16.88210 -16.39964 -16.00767 -15.81879 -15.34163 -15.09440 -14.62386 -14.40075 -14.16467 -14.13850 -14.04478 -13.79167 -13.60054 -13.50169 -13.11544 -12.97857 -12.72939 -12.63017 -12.42562 -12.08407 -11.91609 -11.63389 -11.54563 -11.28026 -11.18916 -10.82772 -10.60854 -10.51171 -10.39391 -9.88068 -9.69734 -9.65500 -9.32667 -8.81612 -8.73421 -8.49000 -8.34802 -7.08948 -6.09798 -3.54067 0.71650 0.88057 2.33643 2.38938 3.10668 3.16747 3.33068 3.35070 3.45538 3.82019 4.00152 4.24991 4.34979 4.47218 4.59402 4.80629 4.95081 5.01976 5.04506 5.10880 5.14930 5.26534 5.35816 5.38473 5.40736 5.50677 5.60981 5.74292 5.81422 5.85450 5.86539 5.96994 6.04458 6.07714 6.15332 6.18172 6.27071 6.30431 6.31807 6.45811 6.53939 6.66735 6.97618 7.53204 7.55381 7.74485 8.07716 8.18852 8.69384 8.73113 9.51812 9.89041 11.03765 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.003199 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.157864 B = 8751.726140 C = 9965.233536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.237 3.763 3 N -0.473 5.473 4 C 0.009 3.991 5 C 0.000 4.000 6 C -0.120 4.120 7 C 0.560 3.440 8 O -0.554 6.554 9 N -0.687 5.687 10 C 0.136 3.864 11 C 0.128 3.872 12 H 0.047 0.953 13 C 0.054 3.946 14 O -0.388 6.388 15 C 0.046 3.954 16 C 0.090 3.910 17 N -0.607 5.607 18 C -0.272 4.272 19 H 0.098 0.902 20 C 0.032 3.968 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.287 1.287 24 H -0.302 1.302 25 H -0.270 1.270 26 C -0.048 4.048 27 C -0.098 4.098 28 C 0.027 3.973 29 O -0.215 6.215 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.264 0.736 44 H 0.148 0.852 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 -0.634 -9.073 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 N -0.203 5.203 4 C -0.102 4.102 5 C -0.019 4.019 6 C -0.125 4.125 7 C 0.346 3.654 8 O -0.434 6.434 9 N -0.338 5.338 10 C 0.012 3.988 11 C 0.021 3.979 12 H 0.065 0.935 13 C -0.025 4.025 14 O -0.306 6.306 15 C -0.032 4.032 16 C -0.035 4.035 17 N -0.333 5.333 18 C -0.399 4.399 19 H 0.115 0.885 20 C -0.168 4.168 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.214 1.214 24 H -0.231 1.231 25 H -0.195 1.195 26 C -0.067 4.067 27 C -0.117 4.117 28 C -0.024 4.024 29 O -0.106 6.106 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.249 0.751 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.166 0.834 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.840 0.716 -9.065 12.006 hybrid contribution 0.419 -2.362 0.351 2.424 sum -7.421 -1.646 -8.714 11.564 Atomic orbital electron populations 1.20383 0.80932 1.05540 1.05007 1.26429 0.96603 0.78327 0.96132 1.70608 1.00877 1.28930 1.19848 1.19656 0.91957 0.91206 1.07349 1.20344 0.87276 1.00923 0.93393 1.19822 0.93658 0.93494 1.05484 1.17861 0.83568 0.86907 0.77022 1.90735 1.87708 1.13322 1.51652 1.45809 1.04583 1.11240 1.72158 1.21188 0.81918 0.94062 1.01627 1.21459 0.93135 0.92663 0.90654 0.93535 1.22905 0.87260 0.91102 1.01203 1.87832 1.48040 1.57143 1.37625 1.23068 0.98621 0.95766 0.85774 1.22065 0.87504 0.93338 1.00570 1.44438 1.16671 1.49097 1.23134 1.19034 1.04697 0.97722 1.18488 0.88493 1.25332 0.96853 0.97412 0.97249 1.69800 1.36640 1.29683 1.17760 0.87083 0.77348 0.85593 0.79234 1.21409 1.23055 1.19524 1.20987 0.97945 0.93095 0.94631 1.19505 0.86956 1.00601 1.04630 1.20494 0.83680 0.94502 1.03691 1.84451 1.15420 1.36259 1.74513 0.88493 0.88947 0.87709 0.83366 0.75075 0.91743 0.90800 0.89314 0.92851 0.89762 0.92981 0.94796 0.90021 0.92558 0.83449 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.02 16 2 C 0.24 2.95 8.23 -13.10 -0.11 2.85 16 3 N -0.47 -7.31 11.34 -8.72 -0.10 -7.40 16 4 C 0.01 0.15 7.23 -84.73 -0.61 -0.46 16 5 C 0.00 0.01 9.64 -38.85 -0.37 -0.37 16 6 C -0.12 -2.08 5.87 -104.99 -0.62 -2.69 16 7 C 0.56 10.65 7.77 -12.39 -0.10 10.56 16 8 O -0.55 -11.85 16.33 5.30 0.09 -11.76 16 9 N -0.69 -12.45 3.74 -61.29 -0.23 -12.68 16 10 C 0.14 2.36 4.44 -4.04 -0.02 2.35 16 11 C 0.13 2.23 3.20 -67.42 -0.22 2.02 16 12 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 13 C 0.05 0.85 6.29 37.31 0.23 1.09 16 14 O -0.39 -6.70 10.74 -35.23 -0.38 -7.08 16 15 C 0.05 0.78 6.99 37.31 0.26 1.04 16 16 C 0.09 1.80 4.38 -3.53 -0.02 1.79 16 17 N -0.61 -12.70 2.78 -164.30 -0.46 -13.16 16 18 C -0.27 -6.58 7.59 -15.05 -0.11 -6.69 16 19 H 0.10 2.59 5.98 -52.49 -0.31 2.28 16 20 C 0.03 0.83 5.28 -17.43 -0.09 0.73 16 21 N -0.90 -25.18 13.97 55.49 0.78 -24.41 16 22 Si 0.88 20.08 24.28 -169.99 -4.13 15.95 16 23 H -0.29 -6.49 6.54 56.52 0.37 -6.12 16 24 H -0.30 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.27 -5.99 6.65 56.52 0.38 -5.62 16 26 C -0.05 -0.75 9.47 -39.52 -0.37 -1.12 16 27 C -0.10 -1.43 9.99 -39.95 -0.40 -1.83 16 28 C 0.03 0.42 7.43 -38.49 -0.29 0.14 16 29 O -0.21 -3.02 10.77 3.80 0.04 -2.98 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.15 2.50 7.64 -52.49 -0.40 2.10 16 34 H 0.41 7.40 5.40 -40.82 -0.22 7.18 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.68 6.82 -51.93 -0.35 0.33 16 42 H 0.08 1.76 4.89 -51.93 -0.25 1.51 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.15 2.19 6.37 -52.49 -0.33 1.85 16 45 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -32.19 362.81 -7.06 -39.25 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.69 Total: 9.43 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.45 Total: 9.37 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.01 Total: -57.66 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.25 Total: -21.82 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.13 Total: 15.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.19 -7.06 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050977025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.416 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds