Wall clock time and date at job start Wed Apr 1 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30085 * 124.87626 * 2 1 4 4 C 1.35587 * 108.83736 * 179.73412 * 3 2 1 5 5 C 1.40294 * 106.61914 * 0.41375 * 4 3 2 6 6 C 1.38583 * 119.92474 * 179.78686 * 5 4 3 7 7 C 1.38218 * 120.21219 * 359.72311 * 6 5 4 8 8 C 1.38183 * 120.67665 * 359.97438 * 7 6 5 9 9 C 1.39357 * 120.23900 * 0.02957 * 8 7 6 10 10 C 1.47435 * 120.29754 * 179.97438 * 9 8 7 11 11 O 1.21606 * 120.00216 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99854 * 359.72466 * 10 9 8 13 13 C 1.46502 * 119.99753 * 180.27228 * 12 10 9 14 14 C 1.52999 * 109.46616 * 179.97438 * 13 12 10 15 15 H 1.08992 * 109.68082 * 300.70577 * 14 13 12 16 16 C 1.53296 * 109.67856 * 180.18705 * 14 13 12 17 17 O 1.42962 * 109.22324 * 187.97735 * 16 14 13 18 18 C 1.42957 * 114.16905 * 62.58289 * 17 16 14 19 19 C 1.53291 * 109.22081 * 297.42272 * 18 17 16 20 20 N 1.47157 * 109.68261 * 61.23121 * 14 13 12 21 21 C 1.36937 * 120.97873 * 350.22702 * 20 14 13 22 22 H 1.08003 * 119.99976 * 31.03405 * 21 20 14 23 23 C 1.38816 * 120.00148 * 211.03253 * 21 20 14 24 24 N 1.31622 * 119.99710 * 10.83290 * 23 21 20 25 25 Si 1.86796 * 119.99983 * 190.83231 * 23 21 20 26 26 H 1.48502 * 109.46973 * 60.00317 * 25 23 21 27 27 H 1.48506 * 109.46730 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47395 * 299.99800 * 25 23 21 29 29 O 1.34134 * 124.87808 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47586 * 300.02623 * 1 2 3 32 32 H 1.08999 * 109.46953 * 60.02503 * 1 2 3 33 33 H 1.07997 * 119.89746 * 179.69319 * 6 5 4 34 34 H 1.08008 * 119.65895 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.87605 * 180.02562 * 8 7 6 36 36 H 0.96996 * 120.00131 * 0.27715 * 12 10 9 37 37 H 1.08995 * 109.47329 * 300.00137 * 13 12 10 38 38 H 1.08996 * 109.46879 * 60.00279 * 13 12 10 39 39 H 1.08997 * 109.51992 * 307.90579 * 16 14 13 40 40 H 1.09010 * 109.50886 * 68.00408 * 16 14 13 41 41 H 1.09003 * 109.50718 * 57.34150 * 18 17 16 42 42 H 1.08998 * 109.51713 * 177.49493 * 18 17 16 43 43 H 1.09007 * 109.68289 * 172.02121 * 19 18 17 44 44 H 1.09000 * 109.68010 * 292.57317 * 19 18 17 45 45 H 0.96989 * 119.99832 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5540 0.6926 0.0060 5 6 3.5682 -0.7103 0.0000 6 6 4.7762 -1.3894 -0.0003 7 6 5.9678 -0.6890 -0.0007 8 6 5.9734 0.6928 -0.0011 9 6 4.7723 1.3995 -0.0007 10 6 4.7768 2.8738 -0.0006 11 8 3.7255 3.4851 -0.0007 12 7 5.9461 3.5442 0.0046 13 6 5.9505 5.0092 0.0107 14 6 7.3945 5.5147 0.0164 15 1 7.9119 5.1377 0.8986 16 6 7.4048 7.0476 0.0275 17 8 8.7450 7.5107 -0.1545 18 6 9.3268 7.1414 -1.4071 19 6 9.4149 5.6134 -1.4917 20 7 8.0858 5.0541 -1.1983 21 6 7.5090 4.1327 -2.0310 22 1 6.4344 4.0944 -2.1323 23 6 8.3054 3.2479 -2.7451 24 7 9.5881 3.1464 -2.4680 25 14 7.5566 2.2013 -4.0990 26 1 6.9759 3.0837 -5.1428 27 1 8.6099 1.3469 -4.7039 28 1 6.4892 1.3418 -3.5274 29 8 2.2741 -1.1004 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 4.7867 -2.4693 0.0001 34 1 6.9042 -1.2274 -0.0005 35 1 6.9121 1.2270 -0.0018 36 1 6.7846 3.0567 0.0042 37 1 5.4396 5.3778 -0.8788 38 1 5.4359 5.3703 0.9011 39 1 6.7773 7.4219 -0.7813 40 1 7.0210 7.4073 0.9823 41 1 8.7062 7.5160 -2.2212 42 1 10.3266 7.5686 -1.4842 43 1 9.7241 5.3185 -2.4945 44 1 10.1364 5.2463 -0.7617 45 1 10.1446 2.5285 -2.9671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051263458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:27 Heat of formation + Delta-G solvation = -2.690125 kcal Electronic energy + Delta-G solvation = -30975.323949 eV Core-core repulsion = 26767.838900 eV Total energy + Delta-G solvation = -4207.485049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.24943 -39.50955 -38.43979 -37.37552 -35.34485 -34.76092 -33.58663 -31.94681 -31.61312 -30.80505 -30.18108 -28.13765 -27.22754 -25.63621 -23.54515 -23.46332 -22.76861 -21.82506 -21.52835 -19.99506 -19.62965 -18.02839 -17.64159 -16.87251 -16.67705 -16.27212 -15.87649 -15.64165 -15.20213 -14.83904 -14.64386 -14.35445 -13.97190 -13.80633 -13.77870 -13.73314 -13.46456 -13.40766 -13.02093 -12.88662 -12.65046 -12.28740 -12.02107 -11.88706 -11.75139 -11.54670 -11.23523 -11.05730 -10.88996 -10.75965 -10.44767 -10.42033 -10.28073 -10.06046 -9.67889 -9.39012 -8.97755 -8.81784 -8.68860 -8.45541 -8.19660 -6.75798 -5.93591 -3.43151 0.42742 1.14626 2.42819 2.44389 3.13155 3.28213 3.33382 3.38549 3.65963 3.77348 4.03921 4.32315 4.51334 4.58412 4.78134 4.89137 5.02671 5.09270 5.13344 5.16139 5.23783 5.28751 5.35811 5.51755 5.59358 5.71599 5.82745 5.84808 5.93016 6.02079 6.09791 6.15323 6.16182 6.22147 6.24501 6.29372 6.32578 6.51661 6.58612 6.75098 7.05842 7.09976 7.46883 7.67505 7.68654 7.85802 8.20290 8.26806 8.83344 9.03433 9.63296 10.22545 11.12548 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.003718 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.075305 B = 7530.117299 C = 8705.008496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.235 3.765 3 N -0.449 5.449 4 C 0.072 3.928 5 C -0.007 4.007 6 C -0.075 4.075 7 C -0.099 4.099 8 C -0.076 4.076 9 C -0.070 4.070 10 C 0.547 3.453 11 O -0.531 6.531 12 N -0.691 5.691 13 C 0.137 3.863 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.034 3.966 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.255 4.255 22 H 0.073 0.927 23 C 0.012 3.988 24 N -0.899 5.899 25 Si 0.891 3.109 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.278 1.278 29 O -0.217 6.217 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.030 0.970 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 -6.931 5.942 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 N -0.178 5.178 4 C -0.042 4.042 5 C -0.057 4.057 6 C -0.094 4.094 7 C -0.117 4.117 8 C -0.096 4.096 9 C -0.074 4.074 10 C 0.332 3.668 11 O -0.409 6.409 12 N -0.343 5.343 13 C 0.013 3.987 14 C 0.018 3.982 15 H 0.060 0.940 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.385 4.385 22 H 0.090 0.910 23 C -0.187 4.187 24 N -0.543 5.543 25 Si 0.720 3.280 26 H -0.209 1.209 27 H -0.214 1.214 28 H -0.204 1.204 29 O -0.109 6.109 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.048 0.952 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.563 -5.865 5.990 12.718 hybrid contribution 0.337 -1.750 -1.181 2.138 sum -9.226 -7.615 4.809 12.893 Atomic orbital electron populations 1.20366 0.80906 1.04796 1.05614 1.26716 0.96824 0.78312 0.95798 1.70744 1.00764 1.27891 1.18421 1.19504 0.91506 0.90483 1.02690 1.20214 0.84008 0.94281 1.07201 1.19981 0.87293 1.00265 1.01863 1.20992 0.97316 0.93916 0.99499 1.21525 0.97552 0.94517 0.96038 1.19371 0.90312 0.94089 1.03584 1.17877 0.84419 0.86325 0.78163 1.90790 1.31228 1.69045 1.49827 1.45916 1.08464 1.07430 1.72536 1.21174 0.96597 0.79818 1.01116 1.21435 0.91734 0.93316 0.91714 0.94040 1.22861 0.84158 0.94731 1.00562 1.87799 1.28384 1.76621 1.38281 1.23353 0.96904 0.99132 0.84955 1.21418 0.86849 0.87543 1.02318 1.44094 1.17733 1.47972 1.21921 1.19209 0.91896 1.08492 1.18866 0.90958 1.25090 0.95986 0.97390 1.00258 1.69968 1.04701 1.38320 1.41320 0.86542 0.78347 0.80472 0.82646 1.20946 1.21431 1.20432 1.84459 1.15140 1.36378 1.74946 0.89198 0.88010 0.88000 0.84526 0.83497 0.83255 0.74836 0.91352 0.92161 0.93469 0.89862 0.94128 0.90242 0.88947 0.95236 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.23 3.29 8.24 -13.02 -0.11 3.18 16 3 N -0.45 -8.25 10.62 -8.48 -0.09 -8.34 16 4 C 0.07 1.33 6.84 -84.44 -0.58 0.76 16 5 C -0.01 -0.11 7.42 -38.68 -0.29 -0.40 16 6 C -0.07 -0.96 10.05 -39.46 -0.40 -1.36 16 7 C -0.10 -1.28 10.00 -39.61 -0.40 -1.67 16 8 C -0.08 -1.20 9.53 -39.19 -0.37 -1.58 16 9 C -0.07 -1.30 5.90 -104.74 -0.62 -1.92 16 10 C 0.55 11.29 7.76 -12.51 -0.10 11.19 16 11 O -0.53 -12.41 16.07 5.27 0.08 -12.33 16 12 N -0.69 -13.45 3.75 -61.38 -0.23 -13.68 16 13 C 0.14 2.59 4.44 -4.04 -0.02 2.57 16 14 C 0.13 2.43 3.20 -67.42 -0.22 2.21 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.06 0.99 6.29 37.31 0.23 1.22 16 17 O -0.39 -7.57 10.74 -35.23 -0.38 -7.95 16 18 C 0.03 0.66 6.99 37.31 0.26 0.92 16 19 C 0.14 3.21 5.38 -3.53 -0.02 3.20 16 20 N -0.59 -13.41 3.03 -164.29 -0.50 -13.90 16 21 C -0.26 -6.24 7.10 -15.06 -0.11 -6.34 16 22 H 0.07 1.84 5.81 -52.48 -0.30 1.53 16 23 C 0.01 0.31 5.06 -17.43 -0.09 0.22 16 24 N -0.90 -23.44 11.13 55.49 0.62 -22.83 16 25 Si 0.89 20.68 29.57 -169.99 -5.03 15.66 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 O -0.22 -3.13 10.77 3.72 0.04 -3.09 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.15 2.31 6.39 -52.49 -0.34 1.97 16 36 H 0.41 8.05 5.40 -40.82 -0.22 7.83 16 37 H 0.07 1.41 7.53 -51.93 -0.39 1.02 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 2.27 6.32 -51.92 -0.33 1.94 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 6.58 8.31 -40.82 -0.34 6.25 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -32.64 369.01 -8.13 -40.78 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.79 Total: 8.01 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -2.43 Total: 12.11 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.20 Total: -58.75 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.25 Total: -23.37 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.64 -8.13 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051263458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.086 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds