Wall clock time and date at job start Wed Apr 1 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30085 * 124.87626 * 2 1 4 4 C 1.35587 * 108.83736 * 179.73412 * 3 2 1 5 5 C 1.40294 * 106.61914 * 0.41375 * 4 3 2 6 6 C 1.38583 * 119.92474 * 179.78686 * 5 4 3 7 7 C 1.38218 * 120.21219 * 359.72311 * 6 5 4 8 8 C 1.38183 * 120.67665 * 359.97438 * 7 6 5 9 9 C 1.39357 * 120.23900 * 0.02957 * 8 7 6 10 10 C 1.47435 * 120.29754 * 179.97438 * 9 8 7 11 11 O 1.21606 * 120.00216 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99854 * 359.72466 * 10 9 8 13 13 C 1.46502 * 119.99753 * 180.27228 * 12 10 9 14 14 C 1.52999 * 109.46616 * 179.97438 * 13 12 10 15 15 H 1.08992 * 109.68082 * 300.70577 * 14 13 12 16 16 C 1.53296 * 109.67856 * 180.18705 * 14 13 12 17 17 O 1.42962 * 109.22324 * 187.97735 * 16 14 13 18 18 C 1.42957 * 114.16905 * 62.58289 * 17 16 14 19 19 C 1.53291 * 109.22081 * 297.42272 * 18 17 16 20 20 N 1.47157 * 109.68261 * 61.23121 * 14 13 12 21 21 C 1.36937 * 120.97873 * 350.22702 * 20 14 13 22 22 H 1.08003 * 119.99976 * 31.03405 * 21 20 14 23 23 C 1.38816 * 120.00148 * 211.03253 * 21 20 14 24 24 N 1.31622 * 119.99710 * 10.83290 * 23 21 20 25 25 Si 1.86796 * 119.99983 * 190.83231 * 23 21 20 26 26 H 1.48502 * 109.46973 * 60.00317 * 25 23 21 27 27 H 1.48506 * 109.46730 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47395 * 299.99800 * 25 23 21 29 29 O 1.34134 * 124.87808 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47586 * 300.02623 * 1 2 3 32 32 H 1.08999 * 109.46953 * 60.02503 * 1 2 3 33 33 H 1.07997 * 119.89746 * 179.69319 * 6 5 4 34 34 H 1.08008 * 119.65895 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.87605 * 180.02562 * 8 7 6 36 36 H 0.96996 * 120.00131 * 0.27715 * 12 10 9 37 37 H 1.08995 * 109.47329 * 300.00137 * 13 12 10 38 38 H 1.08996 * 109.46879 * 60.00279 * 13 12 10 39 39 H 1.08997 * 109.51992 * 307.90579 * 16 14 13 40 40 H 1.09010 * 109.50886 * 68.00408 * 16 14 13 41 41 H 1.09003 * 109.50718 * 57.34150 * 18 17 16 42 42 H 1.08998 * 109.51713 * 177.49493 * 18 17 16 43 43 H 1.09007 * 109.68289 * 172.02121 * 19 18 17 44 44 H 1.09000 * 109.68010 * 292.57317 * 19 18 17 45 45 H 0.96989 * 119.99832 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5540 0.6926 0.0060 5 6 3.5682 -0.7103 0.0000 6 6 4.7762 -1.3894 -0.0003 7 6 5.9678 -0.6890 -0.0007 8 6 5.9734 0.6928 -0.0011 9 6 4.7723 1.3995 -0.0007 10 6 4.7768 2.8738 -0.0006 11 8 3.7255 3.4851 -0.0007 12 7 5.9461 3.5442 0.0046 13 6 5.9505 5.0092 0.0107 14 6 7.3945 5.5147 0.0164 15 1 7.9119 5.1377 0.8986 16 6 7.4048 7.0476 0.0275 17 8 8.7450 7.5107 -0.1545 18 6 9.3268 7.1414 -1.4071 19 6 9.4149 5.6134 -1.4917 20 7 8.0858 5.0541 -1.1983 21 6 7.5090 4.1327 -2.0310 22 1 6.4344 4.0944 -2.1323 23 6 8.3054 3.2479 -2.7451 24 7 9.5881 3.1464 -2.4680 25 14 7.5566 2.2013 -4.0990 26 1 6.9759 3.0837 -5.1428 27 1 8.6099 1.3469 -4.7039 28 1 6.4892 1.3418 -3.5274 29 8 2.2741 -1.1004 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 4.7867 -2.4693 0.0001 34 1 6.9042 -1.2274 -0.0005 35 1 6.9121 1.2270 -0.0018 36 1 6.7846 3.0567 0.0042 37 1 5.4396 5.3778 -0.8788 38 1 5.4359 5.3703 0.9011 39 1 6.7773 7.4219 -0.7813 40 1 7.0210 7.4073 0.9823 41 1 8.7062 7.5160 -2.2212 42 1 10.3266 7.5686 -1.4842 43 1 9.7241 5.3185 -2.4945 44 1 10.1364 5.2463 -0.7617 45 1 10.1446 2.5285 -2.9671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051263458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:26 Heat of formation + Delta-G solvation = -26.748245 kcal Electronic energy + Delta-G solvation = -30976.367187 eV Core-core repulsion = 26767.838900 eV Total energy + Delta-G solvation = -4208.528287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.37669 -41.03190 -39.97899 -38.64529 -36.96782 -35.95090 -35.31681 -33.50668 -32.59049 -32.40694 -31.60880 -29.14132 -28.98655 -27.16178 -25.25003 -24.75153 -24.08322 -23.11799 -22.84443 -21.52765 -21.22046 -19.31482 -18.98488 -18.25558 -18.00305 -17.66550 -17.57526 -17.13824 -16.36794 -16.27900 -16.24719 -16.12872 -15.46143 -15.43803 -15.12684 -14.98621 -14.74955 -14.63271 -14.27843 -14.12015 -13.70214 -13.64214 -13.33284 -13.11339 -13.08161 -13.00033 -12.88448 -12.75441 -12.51180 -12.32506 -12.15832 -12.00580 -11.85457 -11.66531 -11.31114 -10.96173 -10.63454 -10.56437 -10.08127 -9.86177 -9.52557 -8.61971 -7.87419 -5.37891 -0.74098 -0.02019 1.31472 1.38990 1.39321 1.43477 1.48740 1.76846 2.19041 2.44105 2.68035 2.79128 3.02715 3.27509 3.37713 3.45669 3.73278 3.79082 3.95762 4.02603 4.05665 4.18651 4.24472 4.32650 4.48074 4.56211 4.58483 4.59913 4.62440 4.66045 4.66768 4.70432 4.78814 4.90050 5.00308 5.07699 5.11262 5.13891 5.22762 5.30286 5.48608 5.53084 5.64203 5.68973 6.29434 6.37383 6.53909 6.63844 7.11498 7.26248 7.75820 8.32242 9.16535 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.003718 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.075305 B = 7530.117299 C = 8705.008496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.249 3.751 3 N -0.509 5.509 4 C 0.043 3.957 5 C -0.023 4.023 6 C -0.052 4.052 7 C -0.097 4.097 8 C -0.074 4.074 9 C -0.112 4.112 10 C 0.544 3.456 11 O -0.569 6.569 12 N -0.688 5.688 13 C 0.143 3.857 14 C 0.128 3.872 15 H 0.042 0.958 16 C 0.058 3.942 17 O -0.396 6.396 18 C 0.045 3.955 19 C 0.150 3.850 20 N -0.605 5.605 21 C -0.245 4.245 22 H 0.060 0.940 23 C -0.019 4.019 24 N -0.919 5.919 25 Si 0.934 3.066 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.280 1.280 29 O -0.212 6.212 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.118 0.882 41 H 0.041 0.959 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.011 0.989 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -8.456 6.558 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.039 3.961 3 N -0.239 5.239 4 C -0.070 4.070 5 C -0.073 4.073 6 C -0.071 4.071 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.117 4.117 10 C 0.332 3.668 11 O -0.450 6.450 12 N -0.340 5.340 13 C 0.018 3.982 14 C 0.022 3.978 15 H 0.059 0.941 16 C -0.021 4.021 17 O -0.314 6.314 18 C -0.033 4.033 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.375 4.375 22 H 0.078 0.922 23 C -0.217 4.217 24 N -0.564 5.564 25 Si 0.763 3.237 26 H -0.222 1.222 27 H -0.212 1.212 28 H -0.207 1.207 29 O -0.104 6.104 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.198 0.802 34 H 0.204 0.796 35 H 0.163 0.837 36 H 0.251 0.749 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.106 -7.382 6.619 14.158 hybrid contribution 0.420 -1.317 -1.336 1.922 sum -9.686 -8.699 5.283 14.050 Atomic orbital electron populations 1.20750 0.76815 1.07324 1.06693 1.27873 0.98551 0.77356 0.92351 1.70718 1.01456 1.30170 1.21543 1.19803 0.91651 0.92125 1.03428 1.20610 0.85256 0.93415 1.07986 1.20542 0.85844 1.02301 0.98416 1.21440 0.99144 0.92611 0.98268 1.21647 0.96312 0.96076 0.95375 1.19340 0.91818 0.92893 1.07602 1.18290 0.83905 0.87525 0.77125 1.90741 1.32324 1.70105 1.51868 1.45903 1.08232 1.07608 1.72231 1.21139 0.96292 0.79712 1.01012 1.21538 0.91338 0.94754 0.90207 0.94086 1.22970 0.83653 0.92978 1.02482 1.87805 1.29066 1.76405 1.38157 1.23237 0.98473 0.96477 0.85116 1.21256 0.86239 0.89879 1.00191 1.44272 1.17945 1.47907 1.22949 1.19144 0.91271 1.08318 1.18728 0.92233 1.25428 0.96232 0.98383 1.01621 1.70058 1.05250 1.39004 1.42094 0.85880 0.77588 0.79348 0.80839 1.22152 1.21150 1.20656 1.84479 1.14738 1.36368 1.74860 0.85926 0.86547 0.86941 0.80185 0.79562 0.83654 0.74947 0.93369 0.90267 0.93435 0.86424 0.94038 0.87624 0.91462 0.97124 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 71.24 0.75 -0.06 16 2 C 0.25 6.78 8.24 88.37 0.73 7.50 16 3 N -0.51 -19.13 10.62 -295.53 -3.14 -22.27 16 4 C 0.04 1.63 6.84 39.71 0.27 1.90 16 5 C -0.02 -0.68 7.42 22.85 0.17 -0.51 16 6 C -0.05 -1.19 10.05 22.35 0.22 -0.96 16 7 C -0.10 -2.26 10.00 22.25 0.22 -2.03 16 8 C -0.07 -2.33 9.53 22.53 0.21 -2.11 16 9 C -0.11 -4.33 5.90 -19.94 -0.12 -4.45 16 10 C 0.54 23.51 7.76 86.67 0.67 24.18 16 11 O -0.57 -27.98 16.07 -4.05 -0.07 -28.05 16 12 N -0.69 -27.70 3.75 -466.36 -1.75 -29.44 16 13 C 0.14 5.46 4.44 86.38 0.38 5.85 16 14 C 0.13 4.92 3.20 44.97 0.14 5.07 16 15 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.06 1.94 6.29 72.08 0.45 2.40 16 17 O -0.40 -14.52 10.74 -148.98 -1.60 -16.12 16 18 C 0.04 1.65 6.99 72.08 0.50 2.16 16 19 C 0.15 6.72 5.38 86.35 0.46 7.18 16 20 N -0.60 -27.65 3.03 -673.70 -2.04 -29.69 16 21 C -0.24 -12.17 7.10 84.03 0.60 -11.57 16 22 H 0.06 3.12 5.81 -2.91 -0.02 3.11 16 23 C -0.02 -0.98 5.06 84.86 0.43 -0.55 16 24 N -0.92 -48.51 11.13 21.65 0.24 -48.26 16 25 Si 0.93 43.05 29.57 68.60 2.03 45.08 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 29 O -0.21 -5.78 10.77 -9.59 -0.10 -5.88 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.15 4.56 6.39 -2.91 -0.02 4.54 16 36 H 0.41 16.59 5.40 -92.71 -0.50 16.09 16 37 H 0.05 2.04 7.53 -2.39 -0.02 2.03 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.07 3.36 6.32 -2.38 -0.02 3.34 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.25 13.12 8.31 -92.72 -0.77 12.35 16 Total: -1.00 -74.09 369.01 0.22 -73.87 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.54 Total: 26.79 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 6.11 Total: 33.99 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -6.69 Total: -129.67 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.77 Total: -50.06 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.09 0.22 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051263458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.126 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds