Wall clock time and date at job start Wed Apr 1 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30008 * 124.84025 * 2 1 4 4 C 1.35842 * 108.85903 * 179.97438 * 3 2 1 5 5 C 1.39845 * 133.62858 * 180.02562 * 4 3 2 6 6 C 1.36295 * 120.03707 * 179.75481 * 5 4 3 7 7 C 1.40091 * 120.41473 * 0.47802 * 6 5 4 8 8 C 1.47621 * 119.92327 * 179.77804 * 7 6 5 9 9 O 1.21585 * 120.00034 * 179.72556 * 8 7 6 10 10 N 1.34779 * 120.00212 * 359.44806 * 8 7 6 11 11 C 1.46503 * 120.00180 * 180.27468 * 10 8 7 12 12 H 1.09003 * 109.45566 * 35.00019 * 11 10 8 13 13 C 1.53043 * 109.46006 * 275.03371 * 11 10 8 14 14 C 1.53165 * 109.32394 * 301.35317 * 13 11 10 15 15 N 1.46927 * 108.77013 * 305.35879 * 14 13 11 16 16 C 1.36933 * 120.62730 * 233.58368 * 15 14 13 17 17 H 1.08003 * 119.99612 * 152.30974 * 16 15 14 18 18 C 1.38811 * 120.00581 * 332.31453 * 16 15 14 19 19 N 1.31627 * 119.99641 * 342.59284 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 162.60009 * 18 16 15 21 21 H 1.48498 * 109.47262 * 94.34447 * 20 18 16 22 22 H 1.48496 * 109.47181 * 214.34428 * 20 18 16 23 23 H 1.48503 * 109.46862 * 334.34701 * 20 18 16 24 24 C 1.46924 * 118.73913 * 53.61153 * 15 14 13 25 25 C 1.53031 * 109.45942 * 154.97509 * 11 10 8 26 26 H 1.09003 * 109.49720 * 178.61189 * 25 11 10 27 27 O 1.42899 * 109.49787 * 298.70379 * 25 11 10 28 28 C 1.39425 * 120.14846 * 359.50596 * 7 6 5 29 29 C 1.38290 * 119.61686 * 0.24966 * 28 7 6 30 30 O 1.34151 * 124.83962 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47556 * 270.02333 * 1 2 3 32 32 H 1.09001 * 109.46925 * 30.02972 * 1 2 3 33 33 H 1.09003 * 109.46597 * 150.02463 * 1 2 3 34 34 H 1.07999 * 119.97991 * 359.97438 * 5 4 3 35 35 H 1.07996 * 119.78692 * 180.25943 * 6 5 4 36 36 H 0.96997 * 120.00194 * 0.28036 * 10 8 7 37 37 H 1.08993 * 109.49736 * 61.29304 * 13 11 10 38 38 H 1.09000 * 109.49162 * 181.39520 * 13 11 10 39 39 H 1.08995 * 109.58907 * 185.57109 * 14 13 11 40 40 H 1.09005 * 109.58849 * 65.14416 * 14 13 11 41 41 H 0.96994 * 119.99714 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58651 * 186.60033 * 24 15 14 43 43 H 1.09000 * 109.70296 * 66.24597 * 24 15 14 44 44 H 0.96705 * 113.99975 * 180.02562 * 27 25 11 45 45 H 1.08004 * 120.19377 * 180.23085 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0670 0.0000 4 6 3.5557 0.6930 0.0006 5 6 4.7620 1.4005 0.0013 6 6 5.9474 0.7279 0.0068 7 6 5.9680 -0.6729 0.0017 8 6 7.2581 -1.3904 0.0028 9 8 7.2776 -2.6061 0.0034 10 7 8.4144 -0.6979 -0.0025 11 6 9.6947 -1.4100 -0.0075 12 1 9.6003 -2.3226 -0.5961 13 6 10.0849 -1.7675 1.4285 14 6 10.1828 -0.4858 2.2612 15 7 11.1104 0.4399 1.5968 16 6 12.1700 0.9752 2.2792 17 1 13.0640 1.2653 1.7471 18 6 12.0954 1.1449 3.6549 19 7 10.9256 1.1237 4.2580 20 14 13.6548 1.4036 4.6502 21 1 13.8942 2.8586 4.8261 22 1 13.5048 0.7622 5.9810 23 1 14.8053 0.7957 3.9345 24 6 10.8791 0.7807 0.1865 25 6 10.7731 -0.5155 -0.6230 26 1 11.7311 -1.0353 -0.6046 27 8 10.4232 -0.2071 -1.9738 28 6 4.7728 -1.3908 0.0013 29 6 3.5679 -0.7122 0.0008 30 8 2.2734 -1.1011 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3632 -0.8903 -0.5135 34 1 4.7542 2.4805 0.0011 35 1 6.8765 1.2783 0.0116 36 1 8.3989 0.2720 -0.0030 37 1 9.3280 -2.4234 1.8585 38 1 11.0493 -2.2755 1.4276 39 1 10.5557 -0.7246 3.2571 40 1 9.1984 -0.0240 2.3384 41 1 10.8734 1.2427 5.2192 42 1 11.7114 1.3775 -0.1865 43 1 9.9524 1.3470 0.0925 44 1 11.0641 0.3577 -2.4269 45 1 4.7878 -2.4708 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090334126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:53 Heat of formation + Delta-G solvation = -17.596602 kcal Electronic energy + Delta-G solvation = -30259.367254 eV Core-core repulsion = 26051.235812 eV Total energy + Delta-G solvation = -4208.131442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.49170 -40.16381 -38.44353 -37.32170 -35.47851 -35.06154 -34.16608 -32.26052 -31.59360 -30.92557 -30.28278 -28.88676 -28.10247 -25.39535 -23.82017 -23.31448 -22.32409 -21.89341 -21.85344 -20.82733 -18.93281 -18.42956 -17.75317 -17.19874 -17.10766 -16.71655 -16.31149 -15.67714 -14.99841 -14.92224 -14.62742 -14.43093 -14.25828 -14.00536 -13.87790 -13.73715 -13.61487 -13.44174 -13.32009 -12.81256 -12.73980 -12.55781 -12.31031 -12.07230 -11.72059 -11.69411 -11.38808 -11.21828 -10.90923 -10.72279 -10.71529 -10.42186 -10.25822 -9.99360 -9.91452 -9.72535 -9.47156 -9.08094 -8.78936 -8.57192 -8.52063 -6.81831 -5.90390 -3.34477 0.21625 1.00812 1.97874 2.16016 2.95255 3.30757 3.36685 3.39130 3.40575 3.50437 3.71409 4.26395 4.32700 4.47745 4.67097 4.68084 4.77181 4.88873 4.91464 5.08518 5.14346 5.23407 5.25721 5.28257 5.41396 5.53446 5.64963 5.69960 5.75344 5.90919 5.93074 6.00796 6.03737 6.06725 6.20330 6.33568 6.40442 6.49620 6.59567 6.64458 6.86182 7.23337 7.33721 7.55199 7.68479 7.76020 7.87840 8.31906 8.41008 9.07594 9.70011 10.24962 11.17708 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.002677 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.548996 B =10457.585754 C =11309.364205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.250 3.750 3 N -0.482 5.482 4 C 0.043 3.957 5 C -0.067 4.067 6 C -0.082 4.082 7 C -0.101 4.101 8 C 0.561 3.439 9 O -0.543 6.543 10 N -0.695 5.695 11 C 0.166 3.834 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.171 3.829 15 N -0.586 5.586 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.068 0.932 27 O -0.571 6.571 28 C -0.029 4.029 29 C -0.003 4.003 30 O -0.210 6.210 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.374 0.626 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 -1.594 -10.300 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.039 3.961 3 N -0.213 5.213 4 C -0.070 4.070 5 C -0.085 4.085 6 C -0.102 4.102 7 C -0.105 4.105 8 C 0.348 3.652 9 O -0.422 6.422 10 N -0.346 5.346 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.194 4.194 14 C 0.045 3.955 15 N -0.311 5.311 16 C -0.389 4.389 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.086 0.914 27 O -0.375 6.375 28 C -0.049 4.049 29 C -0.053 4.053 30 O -0.102 6.102 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.240 0.760 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.221 0.779 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.111 -2.198 -9.970 19.073 hybrid contribution 1.489 0.370 0.563 1.634 sum -14.622 -1.828 -9.407 17.483 Atomic orbital electron populations 1.20440 0.80740 1.05648 1.05316 1.26562 0.96725 0.78337 0.94490 1.70611 1.00966 1.28920 1.20787 1.20010 0.92205 0.91238 1.03519 1.19961 0.88193 1.00652 0.99737 1.20980 0.98553 0.92952 0.97742 1.19767 0.93034 0.93520 1.04132 1.17844 0.83492 0.87014 0.76883 1.90760 1.87547 1.13193 1.50718 1.45838 1.05129 1.10635 1.72980 1.20890 0.81088 0.94665 0.97195 0.90052 1.22600 1.01062 1.01291 0.94462 1.20806 0.92596 0.85842 0.96237 1.44012 1.31040 1.50236 1.05766 1.19137 0.92195 1.37484 0.90084 0.91578 1.25052 0.96495 0.99853 0.97915 1.70032 1.22066 1.52690 1.09371 0.86281 0.82954 0.77806 0.79704 1.21398 1.21475 1.20366 1.21536 0.98899 0.93257 0.87253 1.22756 0.96745 0.97880 0.81218 0.91389 1.86485 1.52274 1.72896 1.25855 1.19846 0.86092 1.01091 0.97868 1.20051 0.83709 0.94369 1.07175 1.84484 1.15252 1.36075 1.74390 0.88183 0.87576 0.88782 0.83935 0.83946 0.76036 0.91721 0.91303 0.89142 0.96010 0.93472 0.92171 0.96127 0.77920 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.25 2.65 8.23 -13.05 -0.11 2.54 16 3 N -0.48 -6.31 11.33 -8.63 -0.10 -6.41 16 4 C 0.04 0.59 7.24 -84.63 -0.61 -0.02 16 5 C -0.07 -0.83 10.03 -39.68 -0.40 -1.23 16 6 C -0.08 -1.05 9.46 -39.59 -0.37 -1.43 16 7 C -0.10 -1.48 5.88 -104.93 -0.62 -2.09 16 8 C 0.56 9.49 7.73 -12.43 -0.10 9.40 16 9 O -0.54 -10.60 15.99 5.29 0.08 -10.51 16 10 N -0.69 -11.41 4.10 -54.78 -0.22 -11.64 16 11 C 0.17 2.88 2.47 -67.89 -0.17 2.72 16 12 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 13 C -0.15 -2.93 5.77 -26.62 -0.15 -3.09 16 14 C 0.17 3.85 5.05 -3.72 -0.02 3.83 16 15 N -0.59 -13.46 2.99 -172.34 -0.52 -13.97 16 16 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 17 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 18 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 19 N -0.90 -24.95 11.19 55.49 0.62 -24.33 16 20 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 C 0.12 2.18 5.84 -3.71 -0.02 2.16 16 25 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 O -0.57 -8.14 13.21 -35.23 -0.47 -8.60 16 28 C -0.03 -0.41 9.60 -39.12 -0.38 -0.79 16 29 C 0.00 -0.04 7.42 -38.70 -0.29 -0.33 16 30 O -0.21 -2.64 10.77 3.69 0.04 -2.60 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 1.62 6.37 -52.49 -0.33 1.28 16 36 H 0.40 6.22 4.87 -40.82 -0.20 6.02 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 40 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 41 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.38 6.64 -51.93 -0.35 0.04 16 44 H 0.37 3.75 9.08 45.56 0.41 4.17 16 45 H 0.15 2.04 7.64 -52.48 -0.40 1.64 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -32.97 370.56 -8.07 -41.04 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.89 Total: 9.49 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -3.17 Total: 6.12 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.22 Total: -56.35 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.34 Total: -21.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.97 -8.07 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090334126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.444 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds