Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30008 * 124.84025 * 2 1 4 4 C 1.35842 * 108.85903 * 179.97438 * 3 2 1 5 5 C 1.39845 * 133.62858 * 180.02562 * 4 3 2 6 6 C 1.36295 * 120.03707 * 179.75481 * 5 4 3 7 7 C 1.40091 * 120.41473 * 0.47802 * 6 5 4 8 8 C 1.47621 * 119.92327 * 179.77804 * 7 6 5 9 9 O 1.21585 * 120.00034 * 179.72556 * 8 7 6 10 10 N 1.34779 * 120.00212 * 359.44806 * 8 7 6 11 11 C 1.46503 * 120.00180 * 180.27468 * 10 8 7 12 12 H 1.09003 * 109.45566 * 35.00019 * 11 10 8 13 13 C 1.53043 * 109.46006 * 275.03371 * 11 10 8 14 14 C 1.53165 * 109.32394 * 301.35317 * 13 11 10 15 15 N 1.46927 * 108.77013 * 305.35879 * 14 13 11 16 16 C 1.36933 * 120.62730 * 233.58368 * 15 14 13 17 17 H 1.08003 * 119.99612 * 152.30974 * 16 15 14 18 18 C 1.38811 * 120.00581 * 332.31453 * 16 15 14 19 19 N 1.31627 * 119.99641 * 342.59284 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 162.60009 * 18 16 15 21 21 H 1.48498 * 109.47262 * 94.34447 * 20 18 16 22 22 H 1.48496 * 109.47181 * 214.34428 * 20 18 16 23 23 H 1.48503 * 109.46862 * 334.34701 * 20 18 16 24 24 C 1.46924 * 118.73913 * 53.61153 * 15 14 13 25 25 C 1.53031 * 109.45942 * 154.97509 * 11 10 8 26 26 H 1.09003 * 109.49720 * 178.61189 * 25 11 10 27 27 O 1.42899 * 109.49787 * 298.70379 * 25 11 10 28 28 C 1.39425 * 120.14846 * 359.50596 * 7 6 5 29 29 C 1.38290 * 119.61686 * 0.24966 * 28 7 6 30 30 O 1.34151 * 124.83962 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47556 * 270.02333 * 1 2 3 32 32 H 1.09001 * 109.46925 * 30.02972 * 1 2 3 33 33 H 1.09003 * 109.46597 * 150.02463 * 1 2 3 34 34 H 1.07999 * 119.97991 * 359.97438 * 5 4 3 35 35 H 1.07996 * 119.78692 * 180.25943 * 6 5 4 36 36 H 0.96997 * 120.00194 * 0.28036 * 10 8 7 37 37 H 1.08993 * 109.49736 * 61.29304 * 13 11 10 38 38 H 1.09000 * 109.49162 * 181.39520 * 13 11 10 39 39 H 1.08995 * 109.58907 * 185.57109 * 14 13 11 40 40 H 1.09005 * 109.58849 * 65.14416 * 14 13 11 41 41 H 0.96994 * 119.99714 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58651 * 186.60033 * 24 15 14 43 43 H 1.09000 * 109.70296 * 66.24597 * 24 15 14 44 44 H 0.96705 * 113.99975 * 180.02562 * 27 25 11 45 45 H 1.08004 * 120.19377 * 180.23085 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0670 0.0000 4 6 3.5557 0.6930 0.0006 5 6 4.7620 1.4005 0.0013 6 6 5.9474 0.7279 0.0068 7 6 5.9680 -0.6729 0.0017 8 6 7.2581 -1.3904 0.0028 9 8 7.2776 -2.6061 0.0034 10 7 8.4144 -0.6979 -0.0025 11 6 9.6947 -1.4100 -0.0075 12 1 9.6003 -2.3226 -0.5961 13 6 10.0849 -1.7675 1.4285 14 6 10.1828 -0.4858 2.2612 15 7 11.1104 0.4399 1.5968 16 6 12.1700 0.9752 2.2792 17 1 13.0640 1.2653 1.7471 18 6 12.0954 1.1449 3.6549 19 7 10.9256 1.1237 4.2580 20 14 13.6548 1.4036 4.6502 21 1 13.8942 2.8586 4.8261 22 1 13.5048 0.7622 5.9810 23 1 14.8053 0.7957 3.9345 24 6 10.8791 0.7807 0.1865 25 6 10.7731 -0.5155 -0.6230 26 1 11.7311 -1.0353 -0.6046 27 8 10.4232 -0.2071 -1.9738 28 6 4.7728 -1.3908 0.0013 29 6 3.5679 -0.7122 0.0008 30 8 2.2734 -1.1011 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3632 -0.8903 -0.5135 34 1 4.7542 2.4805 0.0011 35 1 6.8765 1.2783 0.0116 36 1 8.3989 0.2720 -0.0030 37 1 9.3280 -2.4234 1.8585 38 1 11.0493 -2.2755 1.4276 39 1 10.5557 -0.7246 3.2571 40 1 9.1984 -0.0240 2.3384 41 1 10.8734 1.2427 5.2192 42 1 11.7114 1.3775 -0.1865 43 1 9.9524 1.3470 0.0925 44 1 11.0641 0.3577 -2.4269 45 1 4.7878 -2.4708 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090334126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = -43.230962 kcal Electronic energy + Delta-G solvation = -30260.478843 eV Core-core repulsion = 26051.235812 eV Total energy + Delta-G solvation = -4209.243031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.44112 -41.50000 -39.75274 -38.53062 -36.92458 -36.01134 -35.68822 -33.68110 -32.77080 -31.96362 -31.77410 -30.29408 -29.16178 -27.16762 -24.95312 -24.38828 -23.81089 -23.51920 -22.83436 -22.00465 -20.41173 -19.62812 -18.90218 -18.68326 -18.04444 -17.97718 -17.56278 -17.04436 -16.78795 -16.26666 -15.90235 -15.82315 -15.48333 -15.32275 -14.99899 -14.90798 -14.89227 -14.42279 -14.25472 -14.08849 -13.85562 -13.55377 -13.54358 -13.29957 -13.23288 -13.01646 -12.72942 -12.71198 -12.36389 -12.33991 -12.18385 -11.99164 -11.82586 -11.70781 -11.32996 -11.11652 -10.99359 -10.49650 -10.16624 -10.07614 -9.60912 -8.69587 -7.88028 -5.33293 -0.81055 -0.01781 1.00303 1.24796 1.47543 1.51026 1.59183 1.79095 2.12228 2.50569 2.57499 2.69982 3.15854 3.27016 3.28772 3.55654 3.66422 3.81085 3.82099 3.87784 3.93393 4.07117 4.16006 4.26869 4.39405 4.53290 4.55731 4.61409 4.63363 4.68432 4.76058 4.84056 4.88651 4.93958 5.00045 5.04256 5.05499 5.15168 5.17258 5.35756 5.42369 5.47607 5.64741 5.71843 6.36758 6.40823 6.44453 6.91144 7.09024 7.13512 7.82703 8.33386 9.18068 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.002677 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.548996 B =10457.585754 C =11309.364205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.263 3.737 3 N -0.512 5.512 4 C 0.035 3.965 5 C -0.068 4.068 6 C -0.076 4.076 7 C -0.117 4.117 8 C 0.561 3.439 9 O -0.575 6.575 10 N -0.690 5.690 11 C 0.167 3.833 12 H 0.079 0.921 13 C -0.141 4.141 14 C 0.183 3.817 15 N -0.601 5.601 16 C -0.261 4.261 17 H 0.073 0.927 18 C -0.047 4.047 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.117 3.883 25 C 0.095 3.905 26 H 0.073 0.927 27 O -0.570 6.570 28 C -0.030 4.030 29 C -0.021 4.021 30 O -0.217 6.217 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.407 0.593 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.005 0.995 41 H 0.249 0.751 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.396 0.604 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 -0.865 -11.766 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 N -0.242 5.242 4 C -0.077 4.077 5 C -0.087 4.087 6 C -0.096 4.096 7 C -0.121 4.121 8 C 0.349 3.651 9 O -0.456 6.456 10 N -0.341 5.341 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.181 4.181 14 C 0.057 3.943 15 N -0.326 5.326 16 C -0.391 4.391 17 H 0.091 0.909 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.214 1.214 22 H -0.224 1.224 23 H -0.193 1.193 24 C -0.009 4.009 25 C 0.034 3.966 26 H 0.091 0.909 27 O -0.378 6.378 28 C -0.050 4.050 29 C -0.071 4.071 30 O -0.109 6.109 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.246 0.754 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.772 -1.439 -11.488 20.381 hybrid contribution 1.549 0.167 0.941 1.821 sum -15.223 -1.272 -10.547 18.563 Atomic orbital electron populations 1.20848 0.76640 1.07506 1.07119 1.27827 0.98483 0.77249 0.91147 1.70664 1.00690 1.29907 1.22965 1.20357 0.93126 0.91374 1.02869 1.20202 0.87599 1.01702 0.99198 1.21085 0.99360 0.92145 0.96988 1.19606 0.91987 0.94249 1.06250 1.18156 0.84225 0.86725 0.75958 1.90733 1.88035 1.14548 1.52279 1.45778 1.04814 1.10823 1.72717 1.20790 0.81926 0.95196 0.95815 0.90290 1.22398 1.01181 0.99305 0.95218 1.20496 0.91365 0.87176 0.95231 1.44169 1.30572 1.50446 1.07366 1.19486 0.93122 1.36013 0.90454 0.90948 1.25742 0.98771 1.00727 0.99058 1.70176 1.23816 1.54661 1.08974 0.85341 0.80235 0.77405 0.77908 1.21361 1.22430 1.19329 1.21696 0.99592 0.94698 0.84950 1.22347 0.96267 0.96122 0.81853 0.90911 1.86460 1.53296 1.73536 1.24473 1.19834 0.86402 1.01038 0.97749 1.20090 0.84202 0.94626 1.08213 1.84504 1.14853 1.36994 1.74581 0.86100 0.86016 0.86513 0.81796 0.82600 0.75425 0.92322 0.90890 0.92778 0.97725 0.94224 0.91065 0.95489 0.75381 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.26 5.15 8.23 88.38 0.73 5.88 16 3 N -0.51 -12.78 11.33 -296.04 -3.35 -16.14 16 4 C 0.03 0.95 7.24 39.47 0.29 1.23 16 5 C -0.07 -1.65 10.03 22.21 0.22 -1.42 16 6 C -0.08 -1.90 9.46 22.27 0.21 -1.69 16 7 C -0.12 -3.46 5.88 -20.06 -0.12 -3.58 16 8 C 0.56 19.14 7.73 86.72 0.67 19.81 16 9 O -0.57 -22.82 15.99 -3.98 -0.06 -22.88 16 10 N -0.69 -22.37 4.10 -445.48 -1.83 -24.19 16 11 C 0.17 5.68 2.47 45.02 0.11 5.80 16 12 H 0.08 2.78 7.58 -2.39 -0.02 2.77 16 13 C -0.14 -5.40 5.77 30.66 0.18 -5.22 16 14 C 0.18 8.42 5.05 86.35 0.44 8.85 16 15 N -0.60 -27.33 2.99 -699.15 -2.09 -29.42 16 16 C -0.26 -13.26 9.58 84.03 0.81 -12.45 16 17 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -2.51 4.91 84.86 0.42 -2.09 16 19 N -0.93 -52.93 11.19 21.65 0.24 -52.68 16 20 Si 0.96 43.12 29.59 68.60 2.03 45.15 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.12 4.11 5.84 86.36 0.50 4.62 16 25 C 0.10 2.89 3.36 30.67 0.10 2.99 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 O -0.57 -14.59 13.21 -148.98 -1.97 -16.56 16 28 C -0.03 -0.88 9.60 22.57 0.22 -0.66 16 29 C -0.02 -0.60 7.42 22.84 0.17 -0.43 16 30 O -0.22 -5.27 10.77 -9.71 -0.10 -5.38 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.16 3.37 6.37 -2.91 -0.02 3.35 16 36 H 0.41 12.23 4.87 -92.71 -0.45 11.78 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 2.89 6.04 -2.39 -0.01 2.87 16 40 H 0.00 0.23 7.74 -2.38 -0.02 0.21 16 41 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 43 H 0.03 0.94 6.64 -2.39 -0.02 0.92 16 44 H 0.40 6.52 9.08 -74.05 -0.67 5.85 16 45 H 0.15 4.17 7.64 -2.91 -0.02 4.15 16 Total: -1.00 -72.04 370.56 -1.51 -73.55 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.06 Total: 26.59 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.69 Total: 21.95 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -7.03 Total: -122.43 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -2.14 Total: -44.82 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.04 -1.51 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090334126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.322 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds