Wall clock time and date at job start Wed Apr 1 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29873 * 124.83740 * 2 1 4 4 C 1.36125 * 108.76793 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76253 * 180.36483 * 4 3 2 6 6 C 1.39191 * 119.46653 * 180.10911 * 5 4 3 7 7 C 1.47715 * 119.95327 * 179.75483 * 6 5 4 8 8 O 1.21567 * 120.00069 * 359.73285 * 7 6 5 9 9 N 1.34778 * 120.00104 * 179.73013 * 7 6 5 10 10 C 1.46501 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45750 * 35.02980 * 10 9 7 12 12 C 1.53040 * 109.46278 * 275.06786 * 10 9 7 13 13 C 1.53617 * 109.24555 * 178.49062 * 12 10 9 14 14 N 1.46927 * 108.54187 * 54.85804 * 13 12 10 15 15 C 1.36932 * 120.63093 * 126.37253 * 14 13 12 16 16 H 1.07998 * 119.99686 * 207.55370 * 15 14 13 17 17 C 1.38804 * 120.00200 * 27.27487 * 15 14 13 18 18 N 1.31620 * 119.99800 * 17.92724 * 17 15 14 19 19 Si 1.86803 * 120.00172 * 197.92139 * 17 15 14 20 20 H 1.48507 * 109.46790 * 94.32202 * 19 17 15 21 21 H 1.48500 * 109.47358 * 214.31756 * 19 17 15 22 22 H 1.48498 * 109.47263 * 334.32151 * 19 17 15 23 23 C 1.46927 * 118.73683 * 306.09229 * 14 13 12 24 24 C 1.53038 * 109.46129 * 154.99967 * 10 9 7 25 25 H 1.09007 * 109.52460 * 61.41354 * 24 10 9 26 26 O 1.42905 * 109.49945 * 301.33929 * 24 10 9 27 27 C 1.40050 * 120.09516 * 359.48242 * 6 5 4 28 28 C 1.36523 * 120.47329 * 0.27223 * 27 6 5 29 29 C 1.38896 * 120.19211 * 359.97438 * 28 27 6 30 30 O 1.34248 * 124.83260 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.46973 * 89.99833 * 1 2 3 32 32 H 1.08997 * 109.47272 * 209.99953 * 1 2 3 33 33 H 1.09002 * 109.46897 * 330.00011 * 1 2 3 34 34 H 1.07998 * 120.26726 * 359.86847 * 5 4 3 35 35 H 0.96997 * 119.99924 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.49727 * 298.56991 * 12 10 9 37 37 H 1.08999 * 109.49557 * 58.65883 * 12 10 9 38 38 H 1.09004 * 109.74287 * 295.12064 * 13 12 10 39 39 H 1.08997 * 109.66854 * 174.54796 * 13 12 10 40 40 H 0.97009 * 119.99683 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.58639 * 173.65117 * 23 14 13 42 42 H 1.08999 * 109.58888 * 294.07241 * 23 14 13 43 43 H 0.96694 * 113.99954 * 180.16047 * 26 24 10 44 44 H 1.07999 * 119.76750 * 180.24670 * 27 6 5 45 45 H 1.08003 * 119.90506 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7610 1.3890 0.0056 6 6 5.9619 0.6854 0.0004 7 6 7.2453 1.4169 0.0014 8 8 7.2520 2.6325 0.0017 9 7 8.4087 0.7365 0.0019 10 6 9.6815 1.4620 0.0035 11 1 9.5797 2.3726 0.5939 12 6 10.0626 1.8261 -1.4333 13 6 11.3782 2.6192 -1.4227 14 7 12.3933 1.8308 -0.7110 15 6 13.5986 1.5523 -1.2983 16 1 14.1422 0.6618 -1.0193 17 6 14.1188 2.4114 -2.2563 18 7 13.6623 3.6421 -2.3540 19 14 15.4669 1.8212 -3.4069 20 1 14.8596 1.3286 -4.6694 21 1 16.3890 2.9458 -3.7071 22 1 16.2237 0.7200 -2.7589 23 6 12.0931 1.3521 0.6453 24 6 10.7716 0.5780 0.6136 25 1 10.8913 -0.3218 0.0099 26 8 10.4005 0.2132 1.9446 27 6 5.9554 -0.7151 0.0002 28 6 4.7755 -1.4019 -0.0007 29 6 3.5678 -0.7158 -0.0008 30 8 2.2738 -1.1019 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 4.7628 2.4690 0.0103 35 1 8.4034 -0.2334 0.0021 36 1 10.1888 0.9151 -2.0183 37 1 9.2748 2.4363 -1.8751 38 1 11.2304 3.5708 -0.9120 39 1 11.7066 2.7987 -2.4464 40 1 14.0261 4.2426 -3.0234 41 1 12.8933 0.6954 0.9865 42 1 12.0023 2.2024 1.3212 43 1 11.0482 -0.3466 2.3940 44 1 6.8903 -1.2557 0.0002 45 1 4.7811 -2.4819 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090352790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:12 Heat of formation + Delta-G solvation = -19.956284 kcal Electronic energy + Delta-G solvation = -29581.659275 eV Core-core repulsion = 25373.425509 eV Total energy + Delta-G solvation = -4208.233765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.62361 -40.13767 -38.42864 -37.41239 -35.42692 -35.26332 -34.41494 -32.35867 -31.77429 -31.13426 -30.04814 -28.79848 -28.16488 -25.42811 -24.19469 -22.76904 -22.43860 -21.95747 -21.87309 -20.67138 -19.66548 -18.39239 -17.88974 -17.23990 -17.14789 -16.83186 -16.37871 -15.90737 -15.20000 -14.81622 -14.69893 -14.51147 -14.14985 -14.11151 -13.91812 -13.74224 -13.61342 -13.37075 -13.24544 -13.06548 -12.81218 -12.62109 -12.29671 -12.07176 -11.89999 -11.63311 -11.59106 -11.13470 -10.90427 -10.83052 -10.70201 -10.35670 -10.27476 -10.00507 -9.92157 -9.75321 -9.49025 -9.16131 -8.86273 -8.77819 -8.47402 -6.80231 -5.86731 -3.30700 0.35056 0.49360 1.99913 2.06094 2.76018 3.10092 3.33471 3.40376 3.42132 3.49917 3.60331 4.11110 4.33839 4.46319 4.48846 4.61650 4.64729 4.67440 4.83895 4.94001 5.02015 5.15103 5.27005 5.30066 5.44882 5.47816 5.52016 5.66672 5.74390 5.80348 5.86970 5.88560 5.94522 6.08299 6.15742 6.26808 6.45592 6.49805 6.64645 6.74877 6.81484 7.22322 7.26838 7.58509 7.65389 7.71429 7.88769 8.33379 8.35657 9.11017 9.73570 10.29238 11.21711 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.748214 B =13378.019790 C =13672.306040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.244 3.756 3 N -0.473 5.473 4 C 0.014 3.986 5 C 0.003 3.997 6 C -0.127 4.127 7 C 0.559 3.441 8 O -0.533 6.533 9 N -0.708 5.708 10 C 0.163 3.837 11 H 0.090 0.910 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.571 6.571 27 C -0.062 4.062 28 C -0.096 4.096 29 C 0.025 3.975 30 O -0.213 6.213 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.395 0.605 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.256 0.744 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.374 0.626 44 H 0.145 0.855 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.521 -12.819 5.405 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.033 3.967 3 N -0.202 5.202 4 C -0.097 4.097 5 C -0.016 4.016 6 C -0.132 4.132 7 C 0.345 3.655 8 O -0.410 6.410 9 N -0.358 5.358 10 C 0.059 3.941 11 H 0.108 0.892 12 C -0.188 4.188 13 C 0.044 3.956 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.375 6.375 27 C -0.080 4.080 28 C -0.115 4.115 29 C -0.026 4.026 30 O -0.105 6.105 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.220 0.780 44 H 0.163 0.837 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.154 -10.825 5.156 26.075 hybrid contribution 1.434 -1.782 -0.513 2.344 sum -21.720 -12.607 4.642 25.539 Atomic orbital electron populations 1.20433 0.80664 1.05690 1.05302 1.26528 0.96705 0.78135 0.95379 1.70661 1.00764 1.28889 1.19925 1.19719 0.92088 0.91197 1.06742 1.20432 0.87249 1.01278 0.92662 1.19892 0.93743 0.93517 1.06024 1.17935 0.83381 0.87221 0.76995 1.90808 1.87358 1.13156 1.49701 1.45993 1.05712 1.10049 1.74045 1.21063 0.80019 0.95253 0.97744 0.89189 1.22687 1.00778 1.01439 0.93849 1.20939 0.83903 0.90966 0.99759 1.44072 1.14327 1.62382 1.10409 1.19167 0.96961 1.03633 1.19133 0.91479 1.25070 0.98335 0.94577 1.01479 1.70044 1.44761 1.04018 1.35341 0.86251 0.81305 0.77809 0.81229 1.21374 1.21700 1.20366 1.21524 0.93195 0.96723 0.89258 1.22785 0.95805 0.97188 0.82354 0.92533 1.86485 1.49557 1.72934 1.28570 1.20896 0.97761 0.92935 0.96449 1.19501 0.86958 1.00587 1.04476 1.20505 0.83874 0.94493 1.03693 1.84474 1.15293 1.36358 1.74389 0.88230 0.88804 0.87528 0.83061 0.77009 0.92249 0.91832 0.95680 0.88775 0.93409 0.92112 0.95265 0.77951 0.83719 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.24 2.30 8.23 -13.11 -0.11 2.19 16 3 N -0.47 -5.90 11.34 -8.72 -0.10 -6.00 16 4 C 0.01 0.18 7.23 -84.73 -0.61 -0.43 16 5 C 0.00 0.05 9.64 -38.85 -0.37 -0.33 16 6 C -0.13 -1.64 5.87 -104.99 -0.62 -2.25 16 7 C 0.56 8.82 7.73 -12.39 -0.10 8.73 16 8 O -0.53 -10.48 15.99 5.31 0.08 -10.39 16 9 N -0.71 -10.32 4.87 -54.75 -0.27 -10.58 16 10 C 0.16 2.87 2.11 -67.89 -0.14 2.72 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.15 -2.85 5.67 -26.39 -0.15 -3.00 16 13 C 0.17 4.03 5.34 -3.49 -0.02 4.01 16 14 N -0.59 -14.14 2.99 -172.06 -0.51 -14.65 16 15 C -0.26 -6.84 9.59 -15.06 -0.14 -6.98 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 18 N -0.90 -25.64 11.19 55.49 0.62 -25.02 16 19 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.12 2.39 6.14 -3.71 -0.02 2.37 16 24 C 0.08 1.31 3.14 -26.61 -0.08 1.22 16 25 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 26 O -0.57 -8.17 13.16 -35.23 -0.46 -8.63 16 27 C -0.06 -0.60 9.47 -39.52 -0.37 -0.97 16 28 C -0.10 -0.89 9.99 -39.96 -0.40 -1.29 16 29 C 0.03 0.29 7.43 -38.49 -0.29 0.00 16 30 O -0.21 -2.22 10.77 3.78 0.04 -2.18 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.15 2.12 7.64 -52.49 -0.40 1.72 16 35 H 0.40 4.54 6.61 -40.82 -0.27 4.27 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.48 6.02 -51.93 -0.31 2.16 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.37 3.77 9.08 45.56 0.41 4.18 16 44 H 0.15 1.01 6.37 -52.49 -0.33 0.68 16 45 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -34.57 374.84 -8.18 -42.75 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.06 Total: 6.82 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -3.14 Total: 6.17 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.26 Total: -56.26 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.34 Total: -21.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -8.18 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090352790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.793 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds